Array 1 25886-24728 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAMF01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99670, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25885 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25819 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25753 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25687 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25621 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25555 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 25489 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25423 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25357 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25291 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25225 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25159 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25093 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25027 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24961 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24895 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24829 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24763 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //