Array 1 5748-6840 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JHXA01000025.1 Kandleria vitulina WCE2011 T511DRAFT_scaffold00022.22_C, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      5748	    36	 100.0	    30	....................................	CTTGCAAGGCTTGGAAAGCCAAAGCAATTC 	
      5814	    36	 100.0	    30	....................................	TCTTCTTCTGTAAGAAGAACCAGCTTCAAA 	
      5880	    36	 100.0	    30	....................................	GAATGTTATATATAAGTGAGTCACAATATA 	
      5946	    36	 100.0	    30	....................................	CTGGTTCCATAGTGTTATTGTATAGATACA 	
      6012	    36	 100.0	    30	....................................	CAGGTGAAGAAAGCGAAAAATACACGGCAT 	
      6078	    36	 100.0	    30	....................................	CTTATCATGTCGTAAAGTTCCCCAGATTGT 	
      6144	    36	 100.0	    30	....................................	GGACAAAGCCAACTAAAGGCACTACAATAA 	
      6210	    36	 100.0	    30	....................................	CGAGTTTATGTGTGATCGCATGAACGTGGT 	
      6276	    36	 100.0	    30	....................................	AATGAACAGTGATTTCGACATTGATATATT 	
      6342	    36	 100.0	    31	....................................	CTTTAGCGTGCCATTTCGGCATCTTGCGTAG	
      6409	    36	 100.0	    30	....................................	GTAGACTTGTCGTGTTCCATTTCACTAAGA 	
      6475	    36	 100.0	    30	....................................	ACATGCGGTTGGTACGATAACAGGGTACCT 	
      6541	    36	 100.0	    30	....................................	GACAATTTATAACGACATTCTGGATGATGT 	
      6607	    36	 100.0	    30	....................................	ACCGGTCACCGGTCACCGGTCACACAACAA 	
      6673	    36	  97.2	    30	..............................C.....	TGTATGAAGCAATCATGACAGTGGGGTCGC 	
      6739	    36	  97.2	    30	..............................C.....	ACATAGAATGACAAATAATGACATAGTGTG 	
      6805	    36	  97.2	     0	..............................C.....	|                              	
==========	======	======	======	====================================	===============================	==================
        17	    36	  99.5	    30	GTTTTGTTACCATATGGATTTTTGCTAGAATACAAC	                               	       

# Left flank :   TACTACAATGGTTCCAAAACAATTATTAAAGTTGTTTTCACCATTGTATTTAGATGATGACTTTTTTAAAGATGAATATGATCTCTCAATAAGTGAAATAATCCTTCTTCAATTAAAAATGATAAAGTATATTGCCGAAAATAATAAAAAGATTGAACGCGTATATGTATATTTAGAAGTTCCTTATCTTACATCAGAAATTATAGATAATATAAAAATAGATAATATAATCATTTTGATATCTTCAAATGATACTTTTTTTGATTTAGATATGAGCAATTACTATATTTGTGAGAGAAAATGCTTCGATTTAGCATCTGAAACTGATGTTTATGAAAATATTTGTGATAATGGGTTTGAACTATTAGATTTGAAAGAAGGGATGAGTTATATGAAAGAATATTTATTTAATAAATCTGGACATAATGTAGATTTTATAAAGAAGATTATAAAGTAATACTCTTTACATAGAATCAAATTCTTACTAGAATGAATTTGAG
# Right flank :  CGTCTTTAGCCATATGACAGGTTGCGTTTCAGTTTTGTCACCATAATGAATTTTGCGCCATATATTGAAAAAAGCCTCATTTCTGAGGCTTTTTAAATGCAAAATGATAACCTGGTTTAATTAAATCCAATAAGATAAGCTCTTCTTGTGGAATATGTCCAACACAGTTACGTTCTCCATCGTTGACTATATCTTGTAAAACAATCTCTAATTCTCCACGATAGTGGGAGAGGTTATCATTGACGATAAGGACATCTCCTTTATGGAAATAAGGCTGATCATATTTTCTATAAGGGATGGAGATATCCTTGTAGTTAAGACGAGGAAAAGAGCTTCTAATAAAGTATGAAGAATAATCATAACGATCAAAGTGTGGCTTGTAGTCATAGACAATCTTTGCTTCTACATGAGAGATGTTTTCTTCTATTAAATCAAGTTCAATGGCTTCTAGATTAAGTTGAGCTAATGAAGAAAGTTCTTCTTCACTAGCATAAGCGTTA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTGTTACCATATGGATTTTTGCTAGAATACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.30,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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