Array 1 2-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000353.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_224_length_9186_cov_29.7642_ID_447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 62 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 122 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 182 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 242 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9105-8797 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000353.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_224_length_9186_cov_29.7642_ID_447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9104 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 9044 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 8984 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 8924 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [8899] Deletion [8889] 8884 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 8824 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 27 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.49, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2993-3261 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000173.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_394_length_3309_cov_33.2265_ID_787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2993 28 100.0 32 ............................ ACTGTCACCAGCGAAAAGGGCACGCCGTGGGT 3053 28 100.0 33 ............................ CAAACACTTGACGGACATAGGAACGAGATGCCC 3114 28 100.0 32 ............................ TGGACCTTCGCGCCGGACTGGGGCGACAGCAT 3174 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 3234 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGGTGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : AGTGAGCACGATCATCATGTCGGCCTGCTGGCGTTCACTGCCGTATAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24218-23050 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000160.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_60_length_24299_cov_31.9641_ID_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24217 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 24157 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 24097 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 24037 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 23977 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 23917 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 23857 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 23797 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 23737 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 23677 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 23617 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 23557 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 23497 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 23437 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 23377 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 23317 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 23257 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 23197 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 23137 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 23077 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1012-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000498.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_540_length_1056_cov_42.7222_ID_1079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1011 30 100.0 38 .............................. TCCGATACAGGGCATGCAGGGAATGGCCCGCGCCAGGT 943 30 100.0 37 .............................. AGGCCGTAGCGGTCCTGGTAGCTCTGCATCAGCATGT 876 30 100.0 36 .............................. AAAGCGGCCTATGAGTACGCCGCCACCAAGCAGGGT 810 30 100.0 35 .............................. ATGACGCCCTCGACGAGAGCGATGGAGACCGTTGT 745 30 100.0 36 .............................. CACCGGCTCCCACTTCACTTTAACGCCTGCGTGTGT 679 30 100.0 37 .............................. ATCGGCTGCGAGGACGTGAAGTTGCCGGACGGCTCGT 612 30 100.0 36 .............................. TCCATGGAGCGGCAGATGATCGTCGTGCGGTAGGGT 546 30 100.0 37 .............................. GCCACTGGTAACCAAGTTGAGGTTCAGGCGAACATGT 479 30 100.0 36 .............................. CACTACGCCGAGATGGTCCGGCGGTGGGCAAACAGT 413 30 100.0 36 .............................. TGCACCGAGTTACCGGCCTGCGCGTTCCACGCCAGT 347 30 100.0 36 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGGT 281 30 100.0 37 .............................. GCCACCTGCACCCGCCAGCCCAGCCTGGGCGGCATGT 214 30 100.0 36 .............................. AACGCGGGCGCGTGGGCGACGGTGGTCATGTGGCGT 148 30 96.7 36 ..........T................... AACCGCTCCACGGCTGGGGTGCGCCTGGAAATGCGT 82 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : GGATTGAAACCGGTCATGTTGCGGAGCGCGGTGAGCACCTGGAG # Right flank : CCAAAGCTGGACCCTGGCGCGGATCTGCATGTCTCGTCGCGCCCCGCACGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19295-19723 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFP01000168.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_92_length_19725_cov_40.5246_ID_183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 19295 30 100.0 36 .............................. TGGTTTACCGAAAACGTGATTACTTCCGGGGTCCGT 19361 30 100.0 36 .............................. ACGAACATCACTGCAACGGTGTTTGCTGCGCTGAGT 19427 30 100.0 37 .............................. GTGGCGTCGGCTCGCACGGCCCGGACTACCTGTCAGT 19494 30 100.0 39 .............................. GGATAGAGTAGGTGCGTAGTCAGTTCGCCCCAGGTAAGT 19563 30 100.0 36 .............................. GCTGACCGTTGGCGAGGGCTTCAACTTCGAGGGCGT 19629 30 100.0 35 .............................. CGGTCATGTTGCGGAGCGCGGTGAGCACCTGGAGT 19694 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGTGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGATAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGTGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : TC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //