Array 1 148063-146080 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXSD01000009.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148062 29 100.0 32 ............................. CAGCTGGCCGTTTTGATATGGACGACGCGCAA 148001 29 100.0 32 ............................. CAGAAATTTACCGTTGCGCCGGCGGTTCAGCA 147940 29 100.0 32 ............................. CGCAGCTGGATTCCGAGCGCGTGGTGTTCGGC 147879 29 100.0 33 ............................. AGGTATCAGCAGAAATGCTGACCCGGATCCTGC 147817 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 147756 29 100.0 32 ............................. CTAAACCCTTTCCCCTGGACGGAGGCGCTCAC 147695 29 100.0 32 ............................. ATTAACGTTTTAATCCCGATATAGTCACTGGA 147634 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGTG 147573 29 100.0 32 ............................. CCATTTCCCCGAGTCAAAATCAGTAAAAAAAT 147512 29 100.0 32 ............................. GCGCGCGCCTCTTCGAGTTGTCGTATCAGCGA 147451 29 100.0 32 ............................. GGGACAAAAAATATCGGCGCCAACGCGGCACG 147390 29 100.0 32 ............................. CACTGATCGCGGCGTATAGCGATACGGGCCCG 147329 29 100.0 32 ............................. GCTATTGACGGGCTGAAAGAGGTGCAGGAGGC 147268 29 100.0 32 ............................. CATTTCAGGCGGCAGGGCGCGCACAACTTGCC 147207 29 100.0 32 ............................. CATACAGTATTATCATAGCGAATTCCCATTGG 147146 29 100.0 32 ............................. CCACCGAACTGGCCGTGCACATTCACCTCAAA 147085 29 100.0 32 ............................. GCGCTCGACCGCCAGACAATCGGCTTTAACGG 147024 29 96.6 32 .............T............... TTTGCGGAAAAAGTGGCCGCGTATTCCGGATT 146963 29 100.0 32 ............................. AGTGCTACACCGATACTGGCCCATCATTCCAG 146902 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 146841 29 96.6 33 ............................T GGCGGCGCGACAAAAATTATACCCAGCAACGAA 146779 29 96.6 32 ............................A GTCGATCCCCACGGTTGAGAAATTATTGACCC 146718 29 100.0 32 ............................. CGGAGGGTTGCCAACCGATGATTTCAGCAAGG 146657 29 96.6 32 ............................C CCTGAATCCGTCAACGTTTGGAGTCTTGAGTT 146596 29 100.0 32 ............................. AAATAATCGTGCTGCTCTGACGTACCGGGCAC 146535 29 100.0 32 ............................. CGCTTCAGGGAGAAGAAACTTCCTTCGGCGCC 146474 29 100.0 32 ............................. ATAAGGCCTGGCTTTAACTCAACGGAGCACGG 146413 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 146352 29 96.6 32 ..........A.................. ACGGTAATTATTTATGCCCTGGATAATATTGG 146291 29 96.6 32 .......T..................... TCTGACTGTCGAGGCATGATCTGCCCTCCGAT 146230 29 93.1 32 A..................T......... TGCGTCACGACGCCGGCGACAGTGACATCGTC 146169 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 146108 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGACACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCAGGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5934-7117 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXSD01000020.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5934 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5995 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6056 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6117 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6178 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [6232] 6232 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6293 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6354 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6415 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 6476 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAAGTCGTTTC 6537 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6598 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6659 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6670] 6721 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [6732] 6783 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC CC [6793] 6846 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6907 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6967 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 7028 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT C [7033] 7090 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //