Array 1 40484-39479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXM010000035.1 Escherichia coli strain FC8 NODE_35_length_49440_cov_20.981060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40483 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 40422 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40361 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40300 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40239 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40178 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 40117 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 40056 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39995 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39934 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39873 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39812 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39751 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39690 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39629 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39568 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39507 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCAATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1235-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXM010000335.1 Escherichia coli strain FC8 NODE_335_length_1254_cov_1.125998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1234 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1173 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1112 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 1051 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 990 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 929 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 868 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 807 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 746 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 685 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 624 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 563 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 502 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 441 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 380 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 319 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 258 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 197 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 136 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 75 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATAATAGGTTATGTTTAG # Right flank : GGACGCCGCCGCTGCGAAGCCGTTTCCGATGTTGAGCTCCCCGCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22964-22325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXM010000013.1 Escherichia coli strain FC8 NODE_13_length_118647_cov_20.390255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22963 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 22902 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 22841 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 22780 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 22719 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 22658 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 22597 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 22536 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 22475 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 22414 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 22353 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 465-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXM010000705.1 Escherichia coli strain FC8 NODE_705_length_499_cov_0.983871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 464 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 403 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 342 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 281 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 220 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 159 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 98 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 37 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGTCTATATTATGATGAAGAGGCAACCATTGA # Right flank : GGGCGCACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //