Array 1 17131-16682 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000038.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17130 28 100.0 32 ............................ AATTCCAGATGAAGAGGTAATTCATTTTCCTC 17070 28 100.0 32 ............................ TAGTTCAGTCCAAAAAAACGTTATACCAATAC 17010 28 100.0 32 ............................ GAATCGGGCTTGCATATACAGCAACATTCAAC 16950 28 100.0 33 ............................ ACATATCCCAAAAATGACTCGATTCTTCGGTAT 16889 28 100.0 32 ............................ TTAATCAGATAATTTCGACGAGGTACACCGCT 16829 28 100.0 32 ............................ TTGGCGCTAAAAAAACGATTTGATCTATTGAT 16769 28 100.0 32 ............................ GCTAAATGCAAACATAAAAACGATTTTAAAAT 16709 28 82.1 0 T.............G.AT......A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCAATTAGCGATTATGCTTTATTGATGCCTATCACTACAGTACCGACGACGATAAAAGGCTATTTACGTTTTAGCCGAGTTAACCCTAAAGGTCAAAGTGCGTTAAGGCGTGCCGAAAAACGATTAACAGCACAAGGTAAATGGACGTCTGAAGTAAAAAATAAAATGATTGAAAAGTGGGGAAGCGTTCATTTGCAATATCCACACTTTCATTTGAATAGTAAAAGTACAGGGCAAAAATTTATTTTGTGGATAAAGCAAGAAAAATGCCCAGAGCCAGTACAAGGGACATTTAATAGCTATGGATTAAGCCAAACAGCCACCGTTCCTGATTTTTAAATTTCTAACCCTTTTTTTGGGGATGATTTTAACATATTGATTATTATTGATATTAAAATGGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAATATGCTCTTTTACAATAAGGCACTATTGAGATAAAATTCTA # Right flank : TTGTTCAGATTTAAATGGCATCATTGTTGTAACTTAAATAATCATTAAGTGCCACAATATAACCCTTTCAATGTGTTTTAACCGTATTATAAAAGTGAATAAATCGCTTAAACTTTTGTTGTCTCTTTTTTGCAAATTTATTGATTATGCTAGATTTCAATTAAAGTGTGTATCGCTCTTTTCGGCTTTTTTAATCTTGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAATAGTTCAACTTTAGCTAAACGTTTAATTCCATAGCGGTTGGCCTTATAATATTTGCACTGGTTAAAGAGACGGGCAGCTTTAGTCGAGTTTTCTTTAGCTCGTTATAAATGGTCGAACAACTGACTATAAAACGTTTAGCTAAATCAGTGGCGGTTAGTTTTGTTTATGATATCAGCGCCATATCTCTTGTCTGTGATATGGCGTTAGTTTGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1899-2293 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000032.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1899 29 100.0 32 ............................. ATTACAATGAAAACGATGAAATCAACGCATTG 1960 29 100.0 32 ............................. CCCTAATTACTCATTATTTTTTAGTCCTCCTG 2021 29 100.0 32 ............................. ATAGTACTGTTTTTCTATATCGTTCACGATTT 2082 29 100.0 32 ............................. ACCGAGGCTCAGGTTAATACATATGACAGAAA 2143 29 100.0 32 ............................. AATTACATGGCAACTGAAACCAAGGTTCTGCA 2204 29 100.0 32 ............................. ATTGGGTAATTCATTATTGAATAAATGTTCAT 2265 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTGTTCCCTATACACATAGGGATAAACCG # Left flank : TAAGTTCAAATAACAGACAGCTGAGCTAAAAATTGTACACTGTTTTAGTGTGAAATTTAACCTTTTTTAAAAAAATGTTAAATAACTATTGTTTAATATGAATAATTTCAGTGAGTTAAACCAGTAACTGATAGCGGCTTAATCCCTTTATTAAACAAGCGATTTAAGCAACTCAATGGCTTATCAATGAAATTGATTAAATGATTAAATTTAAAATAATTTCACGCTGAAACGGTATAGAATCCTGAATATTTTTAACAGGAATTGCGTTTTTTTAATAAAAAAACACCTTGCTTTATTGCAAACTATGTTATAACTGTAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAGACGCAATATTCTCTATCTTATTTTTAATATTAATTTAATAAAAACAATATGTTATAAAATAACTTTTATTTTAAGAATAATTAAAAAAGTTGGTAGAAATTTGAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : GCCCGATTTTGGATTTTTTTAAAAAACACTCCACTGTCCCCTATAAAAATAGTTTTTTGCTTGTTATTACTGAATATGCACAAAAGAATATATAGGTTGCATGTTTTCTATTAGGTTAAGTATGCAGTCTTTGCTAAAACATGGGTATTTCTTGAAACTTTTGACAAAAATCAGTCACTTTTGTTGATACAATTTGCATACTTTCTGATTTATTTATATTTAAATTCTTTTTATCGTAGCAAATACTCTGTTTTTTTAGCAGCCCTATTGTATAGAAGTTGCTCCAACTAACTAGCTGGTCATTTTTGGTATTTATAAAATAAAAAAACAGCCTGTTTTTAGGCTGTTTAGGCTGTTTTTTAAATTTTTAAACTATTTTTAGGAACGGTTAGCTATTCCCACTCTATAGTGGCTGGCGGTTTTCCGCTTATATCATATACGACACGAGAAATACCATCAACTTCGTTGATGATTCGATTGGATACTCGCCCTAAAAAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18933-18665 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000032.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 18932 29 100.0 31 ............................. TGAATATATCTGCCAACTTGATGATGATGGG 18872 29 100.0 31 ............................. ATCACAGCAGAAAGCAAGACTAAAGCCAGCT 18812 29 100.0 31 ............................. TAAAATCGGTGGGGGTTGAATGTGCGTTGAT 18752 29 96.6 31 ............................G AGATTTCTCGGGCTTCACCACCCATTTCTAG 18692 28 75.9 0 ..................A..A-..TCTC | ========== ====== ====== ====== ============================= =============================== ================== 5 29 94.5 31 GTTCACCGCCGTATAGGCGGTTTAGAAAA # Left flank : TTCAAGGTATCCAATTTCAAGCCACAGCAACGCTTTTACAAAAAGAGCAAGCCGTACATGCTTATAGGTTATATTATCAGGCATTTCCCTTTGCAAGAGTGATAAAAGCACCGATTTGGTCATTGCAGTTGCAACGTATAAAGATGACAAGTAATTTATTGGGGTTTGGTAGGAAAATTCATTGGCTAAAAGGCGAGAATAATTTTTAGTGTACTGTCCTGTTAGTTATGGTGTGTTTTTTTTGGGGAATAAAGGGGGGCTATCTTGCCTTAAAAACAGCAAGATCAAAGTTAATTTAAATCAATGCGGTATCTGAATATCTTTTAATGGCCAAATTGACATATTATTGAAATAGCCAAAATCCAGCCAACCCTTTTTTTAATCAAAAAATTAAAATAAATAAAAACAACAAATTAAAAATACCTTATAAAAAAGGGTTTTTGAAAACAAAAATCCTATTTGCCTTTTGCCAAACAATGTTTATAGTATATCGGCTTCTA # Right flank : AAAAAAGCAGAAATCATGATATAACTTATTGATTTATATAAAAACAAAATAAAAACCAAATAAAAACCAAATAAAATCAGCACCCTGTCTAAACAATTCTATAGAGGGGGGAAGATACCGCTTTTATAACAGCCAGAGGTTAATATTGACATTAATCGGCGTCAGAGTGAGGAGACAATTGAGTAAGGTTAGCACGTCAAATAAGGGGCGCTGGGTTATATTTGTCAGAAATAAATTCTAGTTGTGCTGTATAACCGAACTAAGACCGCCGCAAGCTGATTTGTATTGTTTAATATTGCATCGATTATTGACCGTATAAAGACTATTTTGCCTGTTTATGGTATGATTAGTGCCAAATTCAATGGCAATAATTTATGGTGATGATGAGTTATCAAGTTCTAGCACGCAAATGGCGACCAAAATCATTTTCTGAAGTTGTAGGGCAGCAGCACGTCCTAAAAATTCTGTCCAATGCGCTTTCGCTTGGGCGGGTTCATCAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 31586-31252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000032.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31585 29 100.0 32 ............................. CTGTTGATAGCGTGCTATCAATGGCTTTTCAA 31524 29 100.0 32 ............................. CTTTATTCATCTAAAAAATTTAATTCACCGAG 31463 29 100.0 32 ............................. TATATAACAATAAGTGGCGGTAAAATGGCGGT 31402 29 100.0 32 ............................. AATTCGAGCTCGAATTCGGTGTCGACCTCGAA 31341 29 100.0 32 ............................. ATAACGCTAAAGGTTTTTATATCTTATTGCAA 31280 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : CACATTGCCATTAAAGTACGTATGGCTCTTTCTGCTTTCCTATTCGTTTGCGGGTAGGCAGGTTTTGTAAATTTTTGATTGATGCGATGATTATTACCTGTTTAACAAATAGGTGTTCACTTGTGCCTTGATATTCACGCTCATTATCGGAATAAATACATTAAATGGTATATTATTCTTCATCAATAAAATTTATTAACTCATTAAATTTAAAGTAATTTTATGCTGAAACGGTATAGAATCCTGAATATTTTTAACAAGAATTGCGTCTTTTTTAATAAAGAAATAATCTGTTTTATCACTAACTATGTTATAACTATAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAAGTGCAATATTTCCTATTTTATTTTTAATATTAATTTAATAAAAACAATGTTTTATAAAATCATTGTTATTTTAAGAATAATTAAAAAAGTTGGTAGAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : TACGAATGATGTTGAAGCAACTTCTTTGGGATAAATATTTAGAGTATAAAGAATGGAATGGCAACACATTTTCAAACAAAAAATGAAGGGGGTAAATGTTTTTTTAATTCGACGGGAGGCAAGTAGCCTAACGAAGAATGTAATCGTTTCTGATTATACCAATAGGCATAAGCCGAAAAATCGCGTTGTAACTCAGCTGTTGAGCTGAAACGTTGGCCTTTTACAAACTCGGTTTTAATTGTTTTAAATGTCGCTTCCGCTACCGCATTGTCATGTTAGGGAATTCGCTATAACTCCCTAACTCGGACTGGTCACTATAGCTATTTTGAACATCTAAGCTGCACATGCCTGAAATCACTATACCCAATCCATTCCACCAACCTAAACAAAAGCCTCAATATTAGGCAAAAAATTGTCAGGAAATATATTGATTTCATTTTATTTTTTGCTTATTAATAATATTTCAATCTATTAAAGCATTTCATAAAACTTAATTGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39708-40097 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000041.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39708 28 100.0 33 ............................ CCAGCGGGTTGGAGTCGTGATTATTCACTTAAT 39769 28 100.0 32 ............................ TTTTTCTTTAATTGAGTTAATTAACACTAATG 39829 28 100.0 32 ............................ GGGTCCATTCGGTAGAGACCCTTTAATATTAC 39889 28 100.0 32 ............................ CAGCGACCGAATAAGATAAATAGGACGATTCC 39949 28 100.0 32 ............................ AAGATAAATACGATAACCCGTTCTTTTTTTCT 40009 28 100.0 32 ............................ GTTATTACTTACGGACGGTTCATCCCTATGTA 40069 27 92.9 0 ...............C........-... | AA [40090] ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : GAGTATAATACCCAAGATGTGATCCTTGGGCTACCGGCAGAATCAACCGAAGATTGCAAAATTTTCCATGCTGGTACCAGTTTAGAAAAAGGTCGCATTTACACCAATGGCGGGCGTGTGCTGTGCGTTACCGCATTAGGCAATACCATACTTGAAGCGCAACAGCGTGCTTATGAGCAAATAAAAGATATCTATTGGCATGGTTGTTTTTATCGTAAAGACATTGGTTATCGTGCGATTGAACGTGAACAAAACAATTAGCGGTGATTGGTTGTTTTTTTTGAAAAAAAACAACCAACTACTATCAAAAAATCAGTCAGAAAACGTATTGATTTATTTTTTTAAGAATTTTTTTCAATTAAAACCTGTGCCAACCCTTTTTTTTACAACAATTTAAAATTAAATAAAATCATTGTATTAAAAAACAGCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTCGTTTATCTTTATACAGCAGGACTTATCGAATCTTAAGTT # Right flank : ATAAAATCATAAAGATAATTATAAAAACAAAATAACTTCCCAAAATAATTGGCTATGTTGTTTGTCTTATTCCAGTGTCAGAATATGACGCTAATATAGCCATTTAGCACGCTAAACAGGGATGTTTGGCGAGGCTATGCTATGCTTCGCCGAGAGCCAAATTTGTTTGGAACAAATTCTAACATCTAAGCAAAGCGAAGATGGCCTCGAAGAGGCAAGTATCAGAATGATACGAGTAATTGCGCTGGGCAGTCAAAGATCACATTCTACAGCCTTGCGCGGGGGTTTTTAGGGAATTTGGCCAAAATGTTCTCATTATTTGGGATTTTGATTCTTATCGTTTTTTAAGTCTAGTATCGAATACTGACACAATCCTACTTTAAAATAGATTAACAACTCTTTGATGCTTGTTTATAAATTGAATCTTCATTTTAAGTTATACCACTCTATGTTATGCTAGAGATAATATTAGTCACAGGATATTCCTTATGATAAAAGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 29303-28973 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000074.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29302 29 100.0 31 ............................. GGATTGTGACATTCGATTTATACATTGATGA 29242 29 100.0 31 ............................. AATCTAGCCTTAAACCACTCATCAGTTCGTT 29182 29 100.0 31 ............................. ATTCATCTATCAGCACCTCGACATTATTTAT 29122 29 100.0 32 ............................. TGCGTTCTGCCATAGCTATTATTTTGCATTTT 29061 29 96.6 31 ............................A TGGTTCGGTAATGCTGTTATCTATTAGATCC 29001 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 31 GTTCACCGCCGTATAGGCGGTTTAGAAAT # Left flank : ACCAAAGTGGACGATTTTTAGGGTTATGCTGGTGAAACCATTCCAACCGACTTTCAACAGAAACAGGCACTGTATCGGCAGTCACTTGGCGACCAGCAATTGTTGAATTATAAACATCGACAATAAATGGTAAATCTTCTAATGTAGCATCGTGGTAAGTGATCATATTTTTTTGCTGTAAGTGGTTTAAAGAAAAATTATTGTAATTTTATTATTGATTGTAGGCAATAAGGGATATTTTTATCGTGAGGAAAATACAACGTATCAATAGTTTATGGGAAAATAAAAAACAAATAAAATCAATTTTCTACCTAACTGTTATTTTTACAATAATATTTGCTCATTGTCAAAAAATGAAAAATTCATCTAACCCTTTTTTTTATCAATAAATAAAAGTAAATAAAAACAAAGAATTAAGTGTTGATGATAAAAAAGGGTTTTTAAAAATAAAAATCTTATTTGTCTTTTGCCAAACAAGCTTTATAGTATATTGGCTTCTA # Right flank : ATAATTTATATACTATGTGTAGGAATTATTCCCGTTGTTTACAGTAATTAAGAAAAACTACGGTAATGAAGATACATAAAACAACAAAACTAACTTCTTATCATAAACAAGAGATATGGCGCCTCTATCATAAAGAAGAAATAACCATCACCGATTTAGCTAAATGTTATACAGTTATTCATAAGAATAACCAAGCAATTGGTGTAACGATGTTGTAACTGTTTGCTGTGCACTTTAATACTTCAGTGTTAATTTGATTTATTACAGTTTAAATGCTTGGCATAATATGCAAAATAGTAAGATTAAACGTTAATACTGCTTTTTACTTCATCACCTAAGGTTTTCAATTTAAAATTGTCATGCCAACTTGCTAACAAAAGGGACGAAATTAAGGGAATATGGCTAAATCAGTGACATGCGCATTTTAGATTGTTAGTTTTTAACTGGGTGCGAATGGCTTTTGATTTAGTCACACCAAGACAACCGACTGACTTGTATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71787-71519 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000074.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71786 28 100.0 32 ............................ CGATGGGAAGACGAGTTACCGGCTAATGCAAG 71726 28 100.0 32 ............................ ATCACCCGGTCAATTTATTTCATGGTGTAAAG 71666 28 100.0 32 ............................ GAATGAGTTTTTAACTATAGCCAGCGTTTTAA 71606 28 100.0 32 ............................ CGCGACCAATTGATTAAGAGTGACACAAACTT 71546 28 71.4 0 ......T......T...TC...A.TTC. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 CTTTAACGCCGTACAGGCGGTTTAGAAA # Left flank : CAAAGTCGAACCAGTTAAACTAATTAACATTCGTAGACTAAAAAGAAGATTACTGCTGTAAAAGACTTTACGTAAAGTCAAAATGAATGTTTGCACGGTGTATTGGGTTTTGATTGAGTTGAAATGATAGCCAGTAGGATACTATATTGTAGAGCTTTGGGAAAGCATTGTTTATTTTTTGAGTATAAAAGAGTTTTAAAAAACAAATAAAATCAATTAATTAAAAAATTACTTTGGGGGGAGCCTGTGTTTTTTATTTTAAGCACTTTTTTCATTAAAAAACAACCTAAGCGCTACTCAAAAATAGGTTAGTAAAGATATTGATTTTATTTTAACGGGTTTGTTTTGACTTCAAAACCCTTAGAACCCTTTTTTCACCGTTAATTTAAAATAAAATAAAATAAAATCAACAGGTTGAAAAAATCTCAAAAAAAAGGGTTTTCAAAACTGAAATTGTTGTTTATCTTTATACAGTAAGATTTATAGAATCTTAATTTCTA # Right flank : TATAAAATTAACTCGATAATTATAAAAACATAATAATAAGAGATTATTTTATTTGTCTTATTCCTGTGTCAGAATGCACCGACAACAGAGTGAGGTCAGCATGCCAAACAGAAAAGTTTAGCGAGGCTATGCTTTGTTAGGAACACATTTGAACATCTGAGTAAAGCGAAGATGGTCTTGAAAAGGTAAGTATTATGGATGATACAAATAATATTGGGGGATTTTGCACAAAATCCCCTTATTCAGACGCTATCACAGTAGCAATTTTTTACACCAAATGAATAAGATGTCCGAAAATACTGCCCCAATCAACTCCATCCACCAAAACAAGAACTCAATATCAGGCAAAAAATTGTTAGGGAAAACATTGATTTTATTTAATTTTTTATTTTATTGTTTTTTCTAAAAAACCAAATATTTCAATCATTTAAAGGTTTTCATAAAACTTAATCGAAGTCACACCTAAATAATTTTTACCAAAAATTCCCCAAAAAAACTAG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTACAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 19379-18923 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000079.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19378 29 100.0 32 ............................. AATAATTTCTAGCCACTTTTCCCGAAGTATTT 19317 29 100.0 32 ............................. TAGGTACAAAAAAGGGCGTATATTTGCTCGCC 19256 29 100.0 32 ............................. AATTTAGTACACAAACTTTAGAACTAAATAAT 19195 29 100.0 32 ............................. TTTGCATGATTGCTTAATGTGATAAAGTCACC 19134 29 100.0 32 ............................. GTTAACGACAATGCCGAAGAAACATAAATTAA 19073 29 100.0 32 ............................. TGTACCCGTCGGGTGATTTGCCCGATCTGCGT 19012 29 100.0 32 ............................. CATTGAAGAAATTAGGCAAATGATAAAAGAGG 18951 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : ATATTGCCATTAAAGTACGTATGGCTCTTTCTGCTTTCCTATTCGTTTTCGGGTAGGCATGTTTTGTTAATTTTTGATTAATAATATTATTATTACCTGTTTTAACAAATAGGTGTTCACTTGTGCCTTGATATTCACGCTCATTATCGGAATAAATACATTAAATGCTATATTATTCTTCATCAATAAAATTAATTAACTCATTAAATTTAAAGTAATTTCATGCTGAAACGGTATAGAATCCTGAATATTTTTAACAAGAATTGCGTCTTTTTGAATAAAGAAATACTCTGTTTTATCACTAACTATATTATAACTATAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAAGCGCAATATTTCCTATTTTATTTTTAATATTAATTTAATAAAAACAATTTGTTATAAAATAACTTTTATTTTAAGAATAATTAAAAAAGTTGGTAGAAATTTTAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : AGATTGAATATGTCAAAATATTATAAATTGGATGGGTATGATTTAGTTTTGTTAACTGTTGTTCTTATTGAATTGCAAAATCCAAAATTACAACATGCAAAAAAAGGTGATTTTCTATCTATTGTAAAAGAAATATATAGATCATTGCCGGCTTATGTCCATTATACTATTGATCGATATTTTGAAACTATTTTTTTCGGTAGAAATTAATTGTTTTTATATAACATATATGCGAAAAATTAACTATTTATAAATAGTTGAGCTCGCTGACATATGGGACAGTTATTTGGGATTCATTTTTAAAGACAAAAACATCAATCCCGCATCATACGCGCTTAATTTTCCGACTACGGGGGCAAATGGATTGTATTTTGATTTAATCATATATGGCGACGGTGATGTTGATGGATTGACATGGACGCCCGTGACGCATGAAGGAATTACCGCGACAGTAAGACCGATAACAAGAATGGAGAGTTTGGCTCGGAATCGGGATTGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68575-72083 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGT01000094.1 Gilliamella apicola strain App6-5 Gilliamella_apicola_App6-5_contig88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68575 28 100.0 32 ............................ TTTTACTAGCAACCATTATGCACCTGACGATA 68635 28 100.0 32 ............................ GATGGCATCTTGTTGATTAATGGCTTGTCTGA 68695 28 100.0 32 ............................ TGCTGTCGTAGTTTATCTAAAATCTCTACAGT 68755 28 100.0 32 ............................ TGCGCCATTTGGTCCTAATAACCCGACGATTT 68815 28 100.0 32 ............................ ATAAGTTGTCAAACCTAAATTCTTCATTGCTG 68875 28 100.0 32 ............................ TATCCAAGGTCGGATTGTCGCTTTCTACCTGA 68935 28 100.0 33 ............................ GTAGTAAAAGAACCATCTATTTGAAGTTCAAAA 68996 28 100.0 32 ............................ ATCCACCATGACAATAAAGCTGGCTTCTTCAC 69056 28 100.0 32 ............................ TACGTTTCAGTAAAAAATATTGTTTTTTAGAT 69116 28 100.0 32 ............................ AATGGTATGGGATAACAATAAAATCAGTATTT 69176 28 100.0 32 ............................ ACCAAATGATTCAAAATCTAATGAGCCTACTG 69236 28 100.0 32 ............................ AATCACCGCTAATTGTTTTGTTCACGTTCAAT 69296 28 100.0 32 ............................ AACAAGTGCCAGAAAGTGCTAAAAAAGGGCGA 69356 28 100.0 32 ............................ ATTAACCACGGCATAATAAAACCAAGGAATGA 69416 28 100.0 32 ............................ ACTTGTACATTACCTATTACATCAATACCTTT 69476 28 100.0 32 ............................ TATTATCCAGTTTTTTTATCTTAGTCATCCTA 69536 28 100.0 32 ............................ AGAAACTATAGTCGGTTACTGCCAATTTAAAC 69596 28 100.0 32 ............................ AAATTAGTCCCCATGATCTCACCAAGCACTTC 69656 28 100.0 32 ............................ ACAAGCTGTTGAAAAAGAGATGAGCAAATTCA 69716 28 100.0 32 ............................ AATCCCAACAACAGACCCGCTTAGCACCTTCT 69776 28 100.0 32 ............................ TACCTTTTACTAGCAACCATTATGCACCTGAC 69836 28 100.0 32 ............................ TCTATGCCTCCTATATTTCAAAAATCTCAATT 69896 28 100.0 32 ............................ TAAATGATGTACGATCGGAAATAATATTGCCT 69956 28 100.0 32 ............................ AAGCGATTTGAATTTGAAACGTGGATGGAAGA 70016 28 100.0 32 ............................ ACTTATCATTGGCGTTCAGGCGTAACCAATCT 70076 28 100.0 32 ............................ GAGTAAAAATTTTATCGGATAAAGCATGGATT 70136 28 100.0 32 ............................ AACTGGCGGTAACGGCTTCAGTGGATTAAACC 70196 28 100.0 32 ............................ AAACAGGGCCAGCCATAACATGTAGTGCATCA 70256 28 100.0 32 ............................ TGATCGCACGGTTCGTATGGGAACGGTAGTCG 70316 28 100.0 32 ............................ ACGATGTGAAAAGCAGTATCAGTAGGTAACTT 70376 28 100.0 32 ............................ CTTCTAATTTGATTCTATCTCGCCTAAGATCT 70436 28 100.0 32 ............................ AAACAAGGTTGACATTGTACTATCTCCACGCA 70496 28 100.0 32 ............................ TACTTCAAAAACCAAGAAACAAAAGAAGTAAT 70556 28 100.0 32 ............................ CAAGCCATCACCAATGGTCAGTAACACATAGG 70616 28 100.0 32 ............................ AGTGATCTTTTTCTTGAGGATAATGATGTAAC 70676 28 100.0 32 ............................ CGCGTAAGTTAGAAGCAATTGAAACCCATCAA 70736 28 100.0 32 ............................ ACGCAATTTGTGGAGTGTATTTATGGGCTTGG 70796 28 100.0 32 ............................ ATTAAAACGTCAACGAATCGAGCAAAAAATGA 70856 28 100.0 32 ............................ TTGTAAATTTTCAATTTTGATATCTGGGGTTA 70916 28 100.0 32 ............................ TGAAAGAGTCGACAGCCATTTTATCAAACAGC 70976 28 100.0 32 ............................ TACTTATATCACATTCCGAGGCAAACCTACTT 71036 28 100.0 32 ............................ ATAACCCACTTCCATTGCTAATATATCTTCAA 71096 28 100.0 32 ............................ AAGCGATAAGCATGGTTGAATCACCAGAACAT 71156 28 100.0 32 ............................ TCAACAAACAAATCAAATATTATCCTAATAAT 71216 28 100.0 32 ............................ ACTTGGCAAAAGTCTTTTCTAAACTTTGTTGC 71276 28 100.0 32 ............................ CCCTTTATTCCCCAAAAAAAACACACCATAAC 71336 28 100.0 32 ............................ TAAATATTTGGACGAATACATAGGTCAACCGC 71396 28 100.0 32 ............................ AAGAGCAATTATTAAAAGCCGCTAATTAATGG 71456 28 100.0 32 ............................ ATGTCAATCCATCAACATCACCATAGCCGTAT 71516 28 100.0 32 ............................ AGAGATTGTCGTCAGGCAAGATAACGCTAAGC 71576 28 100.0 32 ............................ CATGCACAATACAAAACACCACCGCGAGTTGC 71636 28 100.0 32 ............................ GCATCAAGACCGACACCAACCGGATTAAAGCC 71696 28 100.0 32 ............................ ATTAAACCACTATAAACACGAACACAACCATT 71756 28 100.0 32 ............................ TACTTATATCACATTCCGAGGCAAACCTACTT 71816 28 100.0 32 ............................ ATAATCAGCAAGTGCCCAAGGGGCATGTTCAC 71876 28 100.0 32 ............................ ATATTTTTATTGTTATCGGCACGCCAGTCACC 71936 28 100.0 32 ............................ AACTCTTCAATTTGCACTAAAAACCAACGATC 71996 28 100.0 32 ............................ AGCTAAATGCACCAAGCGAGCCAGTGCAGGTA 72056 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 59 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTTAATT # Left flank : GTGCTATATCATAGCTGATTTGTTATTAATTTTCTATCTATGAGCTTTGATTTGCTTTATTAAGGTTGATAAATCCAACCTTAATTATTTCTCTGACTTTCATGTATCCCAATTTGAGCTGGTCGCGCTTCTTCATTCTATTGTTAGTTGAAAGTTGTTGATGAACATCATTCAATATCTTTTAAGAAAGATAGAGAAGAATTTAATTGATATAGGCTATTTTTCTATTGATAGGTAGATAAAATCAGAATCCGAAAACGCTTAACGCTATTTTTAAGGCTTTTATTAAAAAACTAAGCAAATTGATCTTTTGGTTTTTAGGTTTGGGTAGTACTAAGTCATGACACAGTCAAAAAACTAAAAAACAGAACCCTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAACTCACCGCAAAAAAGGGTTTTTAAAACCTAAATAGCTATTTGCCTTTTTACATACAATATTGATAGTATATTAGCTTCTA # Right flank : TATCACGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAGCCTAAAACGTAACAGTTGTGTAAATACTTCATAATGAGCATACAACTTAATAAATAATTACGCCGCTTGTTTTTGTGTTGTATATGCAATGGAAATCATGTTAGTTGATGTTTCATGAGGTCTTTTGGGGGTAGATAGCAACGGGTCATAATACGTTTAGCCAAATCAATGACGGCTATTTTTTTATATCATCGCCATAACACTTGTTGATGATATGGCGTTGTTTTTTTATATATATTTATTAGAGTCGTTTTTTTTACTACTGTAACCGAAGCAAGTAATTTCTAACCATTATATTAATAGGGTATTTTTAATATCTTCGATCGTTTTTGTGCCAGCTAATTGCATGGTAATAGACAGTTCTTTGTTAAGATGATCAAAGACGGATTTTACTCCCTCAGCTCCACCTAAATTTAGACCATAAAGAATAGGGCGTCCAATAGCAACAAGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTTAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //