Array 1 2873-3199 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000026.1 Gilliamella apis strain NO13 NODE_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2873 28 100.0 32 ............................ GATAGCATTTAGAAAATCGCCGTCATCTTTAT 2933 28 100.0 32 ............................ TATCATTTGCGATTCTATTTGTGCCAGCAATC 2993 28 100.0 32 ............................ AACATATAAAGGTTGGGAAAATGCCATTAATT 3053 28 100.0 32 ............................ ACTTGAGCGCATCGGCGCACAATTTAATAACA 3113 28 100.0 32 ............................ ATTTCACTAATTGAATTAATGGCTGTTTTAAA 3173 27 85.7 0 ...C...A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACCGAAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTATAATACCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAAATCAACACCTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAAAAACCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCAAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGATGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22784-23057 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000025.1 Gilliamella apis strain NO13 NODE_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22784 29 100.0 33 ............................. GTTTTTAGTCGTGAATATTGGTCGGGAACACCT 22846 29 100.0 32 ............................. GGAAAGGGCGAGAATGAAGAAATCACTGAGCC 22907 29 100.0 32 ............................. CCTGCCATTTATGATTCCTTGCTATTTTCTAT 22968 29 100.0 32 ............................. TATATCTCAATCCAACACAAATTTTTGTTGTG 23029 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGAATGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTCTTAAAACCAGAAGATGAAGTAGATTTTATTCTGCCTGGTTATATGCCTATCGTGTGGTCACGTTTTTATGCCAGTGATCTGCACTATGAAAGTATGCTAGGTAAAGGTTGGATACTACCTTATGAGCAGCACCTTTACCAAGAAAACAACATCCTTTACCACGTTGATAATCAGGGAAGAACGCTACCTTTTGAAATTATCGAAGAAGGCCAAAAAATCTATCTTGCTGATGAACAAATTTTTTTGATTCGTACCGAAGGTGGTCATTATGCCATCCAGACCTTAAATGACCAATTCTATTATTTTGGAGAGGTGTTCGATAATGGTGAAAAAGCTTACCTACAACGCATAGAAGATAAGTTTGGTCACTATATCCACTTTAACTATGACAATGACCAACTGACCGATATAACAGCAACAGGTGGTATTAGGCTACACCTACATTACCGACATCCCAAAGGTAAAGTTACTGAAATAGTGCGTATTATTGATAACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27513-27725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000025.1 Gilliamella apis strain NO13 NODE_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27513 29 96.6 32 ............................A GAATCAATTTCAATTTCATCAATAAATAAATC 27574 29 100.0 32 ............................. AAGGTATCGATTTAATCGACCAGATTTTACCG 27635 29 100.0 32 ............................. GAACTTTTCGCGTCAAATTTTGTTCTATCTCC C [27643] 27697 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTAATGAAATAGTACATGTTAGACGTTGATCGGCTTGAGAAACATATATCTGACGCATTAGGAATCCCATTACATGAACTTTGGCCTTCTCGTTATGTTCGGGGAAAAAGGTAAGGAGTAAGTTTAAGGCTGCATTAAGCGCTATTTTGTTTTTTTATTTTTTGAACTGGTAATAAATTGATAGCGGCTTTTTTGCCAATCAATCCACTGGCTTAAAGCATCAAGTTGCATGATGTTTATTTGTTTTAAAAAATTTTTACGCCAATAAATTAAAGTCCGTTTTGAAACACCTAATTGTCGATCAATTCCAGCATGACTTATCCCTTCACTTATAAGGTCTATGTAGGGAAGCCATAAGTCTATAAAGTGCATTTTATGAAATGGGGTATTTGTTAATGGATTAAACGACTTATTACAATGCGTACATATAAATTGGGGACGATCAGGATTGATGATAGGGCTAATCAATCTTGGGCATTTTTTATGACAATGCGGGCAT # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCAAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6185-5917 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000003.1 Gilliamella apis strain NO13 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6184 28 100.0 32 ............................ GCCGCCTTGTTTTTTAGTGCGTTTTTTAATTG 6124 28 100.0 32 ............................ TTCACGGCGTTTGCTCGGTATTAATCAGCACG 6064 28 100.0 32 ............................ TGTCCCTGCGGTGAATTTAGGAGGTAATTATC 6004 28 100.0 32 ............................ ACATTGTTACATTTTTATTTATTTCTTTTTCT 5944 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TCAGCTAGTTCCAATAATTAAAGTGTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGCATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTTAAGAGGGGATAAAGGGGATATTATTTCTAAAAAACAGCAAATAATCGATGCTGTTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGTCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAAGCTCACGCCGTTTATTATTTCACTACAGTTTATTATTTCAGCAATTCCCGAAATTTCAGCAAAATTTTTCAAAATTTCTTAGTTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48359-47903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000011.1 Gilliamella apis strain NO13 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48358 29 100.0 32 ............................. CTTCTTTTTCTAATTTTAATCCATCAATTCAA 48297 29 100.0 32 ............................. GGTGAATTCGTTTTTACAAAAGAAGCAACCAA 48236 29 100.0 32 ............................. CCATTTGATTGGGTGCTAGGTATTAGCTGGAA 48175 29 100.0 32 ............................. CGCATACAAGATGCCCCGTTTTGTCTAATTCG 48114 29 100.0 32 ............................. GAAAACGGTAAACGTTTCTAATAATACTATGA 48053 29 100.0 32 ............................. TTAGCCGAGGGGTATAACCATTTGGCTAAAAA 47992 29 100.0 32 ............................. CCGGTTATCGAACTGCACGAAAATATATGGGG 47931 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCCTCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGCCAGAAAAAGAGCCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTTAATCATATAAGTAAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAAGGCTCGATGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66388-67577 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000011.1 Gilliamella apis strain NO13 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66388 29 100.0 32 ............................. GTAATGTCACATTTAGTACATTCGATGGTTCT 66449 29 100.0 32 ............................. TTGCTAGGTTGGACTCCACAACATGCAAACGA 66510 29 100.0 32 ............................. CATAAATTTGCACGTGTTGATATGGACTATAC 66571 29 100.0 32 ............................. GATGCAACAATGCAACAGCAAGATTTTTATAT 66632 29 100.0 32 ............................. TATAAAATGCACATTATACAAACAACATCAGA 66693 29 100.0 32 ............................. CAATTAGTTTATAAAAATTCTCTAAAAAACAT 66754 29 100.0 32 ............................. TGCCATAAAAATGCTCCAATAAATTGATATAG 66815 29 100.0 32 ............................. ATCGGTTTCGTTACCACCGTTTTTATACCGTT 66876 29 100.0 32 ............................. CTAGGCAACACGCAACCTAAGGACAGGTTACC 66937 29 100.0 32 ............................. GCAATTCAGAGAACTATACAAAGAAAAACGCA 66998 29 100.0 33 ............................. CGCATTAATGGTAAAGATAAACTTGTTTTAGTC 67060 29 100.0 32 ............................. GGTTTAGTATGAGTAACGATATGGAAAATAAT 67121 29 100.0 32 ............................. TGGTTGGGTGGAGTTACAAAAGCAAGAAAAGA 67182 29 100.0 32 ............................. ATGTGATTGATCTCGACATGTCAGAAGATGGC 67243 29 100.0 32 ............................. CGAATTAATAACTACCTCAGTCGTGTAGTGGT 67304 29 100.0 32 ............................. CCGTCTTTGATTTGAAATGTTTTAGCCCAGCC 67365 29 100.0 32 ............................. GCTTATACAGTTTATATAAAAGGCCCTACTAA 67426 29 100.0 32 ............................. ATGTGCCATAGCGCCGCGAATATCAAAGGCTA 67487 29 100.0 33 ............................. TCTTCTTTATAATTTGCCGATAGACTGTCTAAC 67549 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAATATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9787-9460 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000031.1 Gilliamella apis strain NO13 NODE_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9786 28 100.0 32 ............................ ATCATTGCGAAGAGCGAATGCCAACATCCATG 9726 28 100.0 32 ............................ TATTAATATTTTTTATTACATCATAGTTTTCC 9666 28 100.0 32 ............................ TTGATTTACACAAACCTGTCACGTTCGCAATT 9606 28 100.0 32 ............................ TAACGGTTCACGTGTTTACGTGCAAAAATCAA 9546 28 89.3 32 .......G...CA............... AATTTTATTTGAAGATACGCCGAGCAGTTCGC 9486 27 85.7 0 ....................CCA.-... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTAAATTCTATTTGCAGTTCAAAGTACCGCGTTACCAAGATTTGCCAGCTAGCAAGTTTGACGAGGCTATTAAGTGGTTGGGTGGTGTAAGCATGAGAAACGGGTTGTCTGATGAAGATTGGTACGATTTAGCTTGGCTTTATAAAGTAGCAGATAGGATGCGTTCTCAAATTGAGCTTATCGAGCCAGCCCTTAGGGCAATTGATTCTAGTTTTGTCAGTGCATTTCACTCTATGTCAATCGAGTACAAACGAAATTTACATAGTGCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATAGACAAATGGAATAGGGTTTTACCTGTAATTAGACATCATTAATTAGTTAACCCTTTTTTTGCTGATTCTTATAATTCATTTAAAATCAAATGATTATAAACAGGTGTAAAAAAAGGGTTTTTAGCTACAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTA # Right flank : TTCAAAATTAAAACTATCACAAACCGCCTTCTGGCGGTTTTTTATTGCTCATTATTCCGCAAATCAATAACAGATTTAACGCTCACATGAATAGCTCGACGGAGCAAAAGCATGAAGCTGCCTACCTTCAGTGGATTGTTTTCATGTGAGCTTTTATTAAAAAGGTAAAAGGAGTGATTAATGAATAATTTAAAAAAATTATAAGTCCCATTTTGCAATACAACAATCCAAGCCATTGAGCATAATGGACAGCTTTATGTTTCAATGCGCCCCATTTGTAAGAATATTGGTTTGTAGTGGGGATCTCAGTATAACCGTATCATGCGTGACGAAGTAATGAAAACCTGCGTCTTCATTATGAAGACTGAGATTCTATAACCCTCTAATTTCTTCTTGGTTTATTAATAATATGAAAAAATCCATCACCTTTAAGAGATCATTTAATGATCAACTTATCGAAATATTATGCTATTATTCTGACGATAAAAATAAACAGGATA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13058-12608 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000036.1 Gilliamella apis strain NO13 NODE_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13057 28 100.0 32 ............................ ATTGATGCTGACAAAATCAGGTGATGTAACCA 12997 28 100.0 32 ............................ ATTCGGGGGCGCCGGTAGTGTATTGTTGTTAA 12937 28 100.0 33 ............................ CTGCTAATGGTACCGATTTTATTAAAAATAAAA 12876 28 100.0 33 ............................ CTCCTCAAAACCTGTTGTAACATACTGTATTTT 12815 28 100.0 32 ............................ AACAATCAAAAAGCCTGTTACTAGCAGGTTTT 12755 28 100.0 32 ............................ GATGGAATAATTCCATCGGAGGGGGATTTGAA 12695 28 100.0 32 ............................ TACCCCGCCTAGAGCTTTACCAATCGCTTTAC 12635 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCCGGCTCT # Right flank : TATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATATAGCGGTTTAAAATTGATTGCCTAGTGATAAATAAACTGACAACAAATTAAATTTATCTATTTAAAAAATCCTTAAAGCAAATTACTCCCTCAAAAATTGAGAAGAGGAGAGAATTGCTTTTAATCCTATATTGCTTAGTCTTTCTGGTTAAAAATTGAATCTATATCAAATTAGGCTATAATGCCGCATCGTTTAATTTTTATTATTAAAAATGAATATTGGTTTTATTGGCGCCGGTAAAGTGGGTTGTAGTTTGGCTAAATATTTCAGCCAATGTGGTTTGCCAGTCGTTGGTTTTTATAGCCGTGATGCACATCAAGCACAAGCAGCAAGTGATTTTACGAATAGCAAAGCATATTTAACTTTATCTAACTTAGTAGAGGATTGTGATTGTCTATTTTTGACTGTGCCGGATAGTCAAATTAGCTCAGTTTGGCAAGTGGTTAGTCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2654-2267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000040.1 Gilliamella apis strain NO13 NODE_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2653 28 100.0 32 ............................ ACGCTGCCCGGGCGAGATTTTCGCTGCTATCG 2593 28 100.0 32 ............................ TACCAAAAAAATAATTCAAAAATAATTCAAAA 2533 28 100.0 32 ............................ TCGTTACGCCAATATTTGTTTTCAAATTGTTT 2473 28 100.0 32 ............................ TGCACTGTCCGCTAGCGCTGGTATAGCAATGC 2413 28 100.0 32 ............................ ATTGATTTGGTCACCGTAAGATAACTCGCCTA 2353 28 100.0 32 ............................ ATTCATTTATCCATCCGTTACCAAATTCTCTT 2293 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GAAAAATAACATTAGGGCGTTAAACAATCATTGCCCTGCTAAGGCAATGGCGTTGATGCTGACGAAGTTGGCGATAAAATCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGACGGAGGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTACTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTCCACTATATTTATATAAATGGATAAATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCACAGTTTATTTTTTCAACAAATTCAGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2005-2272 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000046.1 Gilliamella apis strain NO13 NODE_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2005 28 100.0 32 ............................ GATTTGTGAGCCAACGGTTAGTTTTTCTATCG 2065 28 100.0 32 ............................ ACATGTATCGTTTTAAACCGTTCTAGCGATAT 2125 28 100.0 32 ............................ AGTCAGCAGAAACGGTGCGAGTTATTGATAAA 2185 28 100.0 32 ............................ GTGATAGGGTTCTGGAATAAAAACAGTTATAG 2245 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : ATCAGCTAGTTCCAATAATAAAAGTGTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAGCAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : TACACCGCTTATTGAGTAGGTTAAAATGGTGATTTTTTAAGAGGGGGATAAAGGGGCTATTATTTCTAATAAACAGCAAATAATCGATGCGGTTTTCGAGCTATCAGTATTTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2919-3366 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000013.1 Gilliamella apis strain NO13 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2919 28 100.0 32 ............................ CTGTTCGGCGGTAATTTCGAAATAATTAAATA 2979 28 100.0 32 ............................ CATAGCCAGCATGTGCTTGGTAATGCATCGGA 3039 28 100.0 32 ............................ TGTGGTAGCGGTCGGCAGCGGTGAAAACTATA 3099 28 100.0 32 ............................ TCAATTGATGAATTGAGGCTTGCTGCCAAAAA 3159 28 100.0 32 ............................ GTTATGACTACCACCGACAAAAACCACTCGTT 3219 28 100.0 32 ............................ TGCCGAGCATAAATGCTTAAATAACCGAAAAG 3279 28 92.9 32 ............G.......T....... TCGAGTTACAACTCCTCAAATTGCAGAACACG 3339 28 67.9 0 .......G....G....CG.T..TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : CCCATCCAATAAATCGTTAACGTTAGTTATAACATCAGCTAATTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAAAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : ATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGGAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55974-55576 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000014.1 Gilliamella apis strain NO13 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 55973 28 100.0 32 ............................ ACAAAACCATTTCTACTCACTAGTTAGCGGTG 55913 28 100.0 32 ............................ ATTCCGTTAGGTGCTTGTGTAGAATGACCGAA 55853 28 100.0 32 ............................ TGCGGATATTGTTATAAAACATTCCGATGATA 55793 28 100.0 32 ............................ ATACACCTCTTGCCACTCTTGTAATTGTGCGG 55733 28 100.0 32 ............................ TAAAAATGGAAATATTGTTTCTAAATATAAAT 55673 28 100.0 42 ............................ TGATAAGAAATGATAAGAAGAAAACTAAGAAAACCAAGAAAA 55603 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ========================================== ================== 7 28 96.9 34 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TCAGCTATTACTGATAATAAACGTTTATTTTTATAAATTAGTTTAGTGCTTCTTATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCAAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96141-95875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000005.1 Gilliamella apis strain NO13 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96140 28 100.0 32 ............................ TAATGTCATATTTCTAAACCACCTATTCGGCG 96080 28 100.0 32 ............................ CCACCCCAACGCCTCGCAATTGGTGGTTGTTG 96020 28 100.0 32 ............................ CAGATGACATTTCTTTTAACGTCTTACCTGAT 95960 28 100.0 32 ............................ ATTATGTTTTGACGTTGAGCAACCGAAGGGCG 95900 26 85.7 0 ...................--.A.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCATTCATTTGAACTATCCACACCTTCATTTTGCTAGTAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAACTGCCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGGTTTTTGAAACTTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAACTGTTTAAAAATCAATTAATTGAAAAACTACCGAAAAAAAGGGTTTTTGCAAAGTAAAATAGATTTTGCCTTTTGCATAACGATGTTTATAGTATTTTGGGTTCTA # Right flank : TTTGAGGAACGGGGTTTTTTGAGCTTAAAATCCTTAATAACTGAAATGATCTGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTCTAAAATCAGTTGCATAGATTATTTTCAGTCACTATACTTTTAGCGGATTTTAAGTACAATAATCGGCTGTTATTTAGTCAAATTAACTTAAAAAAACCAAATAAAACATGGAATTACTTGACAAGGTTGTTGTTATGAACTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATACTTTAAATTCATCTCGTTATTGCAATCAACGTTTAGTCTTTTCTAATAATTTATTTTTTCCTCGATTTTTAAGGTTATTTTTATTTTCGCCGCTTTTTAGCGTTTTCGCCGTTACTTTAGTTTTATTCTTTTCATCAAGTAGTTATGCACTAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 105867-105659 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000005.1 Gilliamella apis strain NO13 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105866 28 89.3 32 ...T...G.T.................. TGCGCAACTTCTTCTAATCCAAATCCTTGCTC 105806 28 100.0 32 ............................ GCAAATTAACCTTGCTGTATGTTTAGCCCATG 105746 28 100.0 32 ............................ CTAAGTCGGAATCATCGCAAACATTGATTATC 105686 28 75.0 0 .................C..CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTATTTCTTAGTTCTTAGGTATTAAAGCTGAGGATAAGAAAAATAACGTTAGGGGGATAAAGAGCGCTTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGCAGGCAGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCCTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 121615-121408 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000005.1 Gilliamella apis strain NO13 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121614 28 100.0 32 ............................ ATTCTCCTAGGCCTAAAAAGAAAAAGGCTAAC 121554 28 100.0 32 ............................ GTTTAGAAAGCATTATGATTGAATATTTCATA 121494 28 100.0 32 ............................ AAACGAAATAACGGCTAGACATTGCTCATTAA 121434 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTAAAGCCTAAATCCCGCCAATAAATCGTTAACGTTAGTTATAAAATCAACTAGTAACCAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTGGATTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 134773-134566 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASG01000005.1 Gilliamella apis strain NO13 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134772 28 100.0 32 ............................ ATTCTCCTAGGCCTAAAAAGAAAAAGGCTAAC 134712 28 100.0 32 ............................ GTTTAGAAAGCATTATGATTGAATATTTCATA 134652 28 100.0 32 ............................ AAACGAAATAACGGCTAGACATTGCTCATTAA 134592 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTAAAGCCTAAATCCCGCCAATAAATCGTTAACGTTAGTTATAAAATCAACTAGTAACCAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTGGATTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //