Array 1 2833182-2831933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBJC01000001.1 Escherichia coli strain ZJ167 167_Genome1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2833181 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 2833120 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 2833059 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 2832998 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2832937 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 2832876 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 2832815 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 2832754 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 2832693 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 2832632 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 2832571 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 2832510 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 2832449 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 2832388 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 2832327 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 2832266 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 2832205 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 2832144 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 2832083 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2832022 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2831961 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2866543-2864927 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBJC01000001.1 Escherichia coli strain ZJ167 167_Genome1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2866542 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 2866481 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 2866420 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 2866359 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 2866298 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 2866237 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 2866176 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 2866115 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 2866054 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 2865993 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 2865932 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2865871 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2865810 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 2865749 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2865688 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 2865627 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2865565 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 2865504 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 2865443 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 2865382 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 2865321 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2865260 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2865199 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 2865138 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 2865077 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 2865016 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2864955 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //