Array 1 32767-31178 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIJX01000007.1 Escherichia marmotae isolate 895B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32766 28 100.0 32 ............................ AGCTATTCCCGATAATCTGATCAACTTCCGCA 32706 28 100.0 32 ............................ TCGGCAACTTCTTTGCCCGTTGCCGCAGCAAA 32646 28 100.0 32 ............................ TGAAGTCAAACCCCCTGCGTTTGGATTTGCAT 32586 28 100.0 32 ............................ AGGACGGAAAATTTATTGTGAGGCCGTTACGC 32526 28 100.0 32 ............................ ACTTCCCCGCGAATTTTCCGCATTAAATCTGG 32466 28 100.0 32 ............................ AGACCGCCAGCGTGCTGCCGTGTGTGATGTCC 32406 28 100.0 32 ............................ GACCTGCGCTTTTGTGGCCCACAGCGCATATA 32346 28 100.0 32 ............................ TTTACGTTGTCACTGCTAGCGGAGCGTATCTC 32286 28 100.0 32 ............................ AGTAAATCGCGCACCAACGAGCTTGAAACGAT 32226 28 100.0 32 ............................ GCCTACGCCGAAAGCGCGTTCTACTGGTTTAG 32166 28 100.0 33 ............................ AAGTACTCGCAAAAACCACGCAGCCTGTTATCT 32105 28 100.0 32 ............................ GTAGCACCCGCTGCAACAAGCGCAGGTACAGG 32045 28 100.0 32 ............................ TGAATTCAAGCAGACTCGCAAAAATTATCTGG 31985 28 100.0 32 ............................ TCCAGCGCCAACGTGATCGCCTGTTTGCGAAA 31925 28 100.0 32 ............................ AGAGCGAACGCCGCTGAGACTGCGCATTATTG 31865 28 100.0 32 ............................ GATCGCGTTTTGCCGCCGCTCTGGTTTTAGCA 31805 28 96.4 32 ...........T................ AGTTGATCCGGAACAGCTACAGATCGGCAAAT 31745 28 96.4 32 ...........T................ CTCTGGGACTCGTGTCAATAACTGTACTGAGG 31685 28 96.4 32 ...........T................ AGGACCGCGCCAACTTACCCCGCATCATCCAC 31625 28 96.4 32 ...........T................ CAATCCGTAGTTATCGAGCCCGGCCTTAATAA 31565 28 96.4 32 ...........T................ TTGAAGGCCGATTTATCTGCACTGCTGAATGT 31505 28 96.4 32 ...........T................ AGATAGATTCGGGCGCATCGCCGCCCCTGATC 31445 28 96.4 32 ...........T................ ATGATTATTTTCCCTTTTTGTTGTCGATGACT 31385 28 96.4 32 ...........T................ ACCGCCCATATTATTTTCCCAAATTTTACGCA 31325 28 96.4 32 ...........T................ TCAGCAATTTTTGCCAGCAGTTCAATCGCTGG 31265 28 96.4 32 ...........T................ AGTACCAGATGGATTTGCGCGTTATTAATTCA 31205 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATCTTGACGTCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48844-47012 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIJX01000007.1 Escherichia marmotae isolate 895B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48843 28 100.0 32 ............................ TCCAGCCTCGCCCACGCAACGGCGATCTCTTC 48783 28 100.0 33 ............................ GTAATGATGTAAAACATCAGGTTGATAATATGG 48722 28 100.0 32 ............................ TCCCGGACACCACGCATCCAGTCACGGATGGT 48662 28 100.0 32 ............................ GTTGTGTGTTCGCGAAGATGTGCAGGGGGCTA 48602 28 100.0 32 ............................ AACCGAAACGGCAGTAGTTAAAACGTGCGAAC 48542 28 100.0 32 ............................ TTATGGAATACCGATTCATAACGGCGGAAATG 48482 28 100.0 33 ............................ GGTAAGCGCCTGGCCGTGACTATCCCGAAAAAT 48421 28 100.0 32 ............................ GCAGATTGTGAGCACCTGGACGAAATCGAAAC 48361 28 100.0 33 ............................ AATGAAAGGCGGGCCATAAGTGCCGCTCATCAG 48300 28 100.0 32 ............................ AGTTTGATTCGAAACTGGCGCAGATAGTTCAG 48240 28 100.0 32 ............................ TTTATGCGCCCGATTTTCCCGGCGTCACTGCC 48180 28 100.0 32 ............................ AGTGACGGACAGAACGGTCAGGACCTGGATTG 48120 28 100.0 32 ............................ TGACAAAAATCCGTTAGGCGCGGAAATGATGA 48060 28 100.0 32 ............................ TGTTCGCGCGACAATTTGGATACTGAATCAGC 48000 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 47940 28 100.0 32 ............................ CGGGGCTTTTTATTCAATATGCCACCGCCGGT 47880 28 100.0 32 ............................ TCAATCCTCCCCGCCTGCGCCGCGTTGTAGTT 47820 28 100.0 32 ............................ AACCCCAATAAGCCGACGTGGGGATTTACCGC 47760 28 100.0 32 ............................ GTCTGCCGCCGGGTTCATCTCGCTTGTGATGC 47700 28 100.0 32 ............................ GCGCAGTCATGCACAGCGCGCAGCAGGCTGCG 47640 28 100.0 32 ............................ AATAAGAACGGTCCCTGATGTGCGGAGCACCG 47580 28 100.0 32 ............................ GGTGATAGCGTCGCGGGTAAGCCAAAATATTC 47520 28 100.0 32 ............................ GTCGGATATGCTGATTATTCAGATGACCGAAG 47460 28 100.0 32 ............................ GCCTGCGCGCGCACATCGGCGAGCCTGACACC 47400 28 100.0 32 ............................ ACGCCGGATAAGTCAGCGCGCCAGGGCGCTGC 47340 28 100.0 32 ............................ GTTTATCGGTATTGAACGGGAGCCGCGATATT 47280 28 100.0 32 ............................ AATGATTTTCTTATGAAGAATCTGGACAAAGT 47220 28 100.0 32 ............................ TCTAATCGCCTCGTATCGCCTGGACTGGTTCC 47160 28 100.0 32 ............................ AGATATTTGCCCAATAACCGGACGTGCATTTT 47100 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 47040 28 92.9 0 ....................T...C... | C [47017] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //