Array 1 55119-55444 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPA01000020.1 Helicobacter pullorum strain NAP8W25 contig020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 55119 36 100.0 35 .................................... TAAAAGCATTAAGCCAACTCAAAATAAAACCAAAA 55190 36 100.0 40 .................................... AAATGCTATCATCCTGCCCTAAAATACCAAATTTACAAGG 55266 36 100.0 36 .................................... GGCAGTATAAGCTATTCATTAAGACATTAGATTTGA 55338 36 97.2 35 ......................A............. CTTCCCTAATGTCCTCATCCCTTTTGGTGCTTTTA 55409 36 97.2 0 ......................A............. | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 98.9 37 ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCAATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCGCATAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : AGAGTGTAGCTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 39-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPA01000097.1 Helicobacter pullorum strain NAP8W25 contig097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 39 36 97.2 35 ......................A............. CTTCCCTAATGTCCTCATCCCTTTTGGTGCTTTTA 110 36 97.2 35 ......................A............. AGAGTGTAGCTGCTAAAGCCGTCACTATTCAACTG 181 36 100.0 39 .................................... CTAAAAGAGGCTCACAGCTTACAAAGATTGTAATATCCA 256 36 100.0 38 .................................... GGAAAGTTAGTTACTATAAACATACCATATTCATTTTT 330 36 100.0 39 .................................... AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 405 36 91.7 40 ............A........TA............. TTCTATTTTAGATAATATAGCAGAATGTGATCTTTCTAGA 481 36 94.4 35 .....................TA............. ACATATTGAAAAGATTTATAAGGGATTACAATAAG 552 36 100.0 39 .................................... TGCCAACTATCACCCTTGAAGAGTAGAGTATAGTTGGAG 627 36 91.7 0 .......G.............TA............. | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 96.9 38 ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Left flank : ACGGCAGTATAAGCTATTCATTAAGACATTAGATTTGAA # Right flank : CAAATTTGCTTCTCCAAAAGGAGGAACATACTATGATTTAACAACACAACCTATTTCAAAAGGTTCTAATTTTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCACAAAATGTATTGAAAAACGAATAAGAAAAATACTGCCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //