Array 1 47632-50168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000003.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 47632 29 100.0 39 ............................. ACTTTTTCTTTTCTCTTGTCTTTTCCGTTCCAGCCCCAG 47700 29 100.0 36 ............................. AGATAATTTAGATACACTAACAAAAAGTGTTAATGA 47765 29 100.0 39 ............................. GGTCGAGTGTGGAATTTCCTAAGCAATACTTATAATAAA 47833 29 100.0 37 ............................. AAGAACAATAAAACACACGAAGAAGAAATATATTCGA 47899 29 100.0 37 ............................. TATTTCTTTTTTAGCTTTATTCTTTAAATCTTTATCT 47965 29 100.0 38 ............................. CTAAGTATCATATACATATATTATTAATAATTATACGC 48032 29 100.0 37 ............................. AGTATAACTTCTGGACTTACATATCCAGCTATCCATA 48098 29 100.0 36 ............................. TGTGGATAACTCTGTGGATAATATTGTGGATAGAAT 48163 29 100.0 37 ............................. ATGACATATGATGGGTTCATGACTAAAATAGGAAGAA 48229 29 100.0 36 ............................. CTAAGTTACTTGATGATATTTCAACTGTACCGCTAT 48294 29 100.0 37 ............................. TGATATGGTATACAATGATAAGAATGATGGAAGATGG 48360 29 100.0 37 ............................. TTTTATGACATCTTTAAAGACAAAATTTGCCATGCTT 48426 29 100.0 37 ............................. AAATAAGTCAATGAGAGCTGTTTACACCGATATAATT 48492 29 100.0 36 ............................. TACAAAGCCGGAAACACAACAGTCAATGGAATAACA 48557 29 100.0 38 ............................. TGCTTTAAGGCTTTCAAGCAAAAGGTCCTGTACTTCCC 48624 29 100.0 37 ............................. GGCTAATGTATTTTAGTACAAGCATTAAAATAAAAAG 48690 29 100.0 37 ............................. AAAACATCTATAAGATCTGTTTTTATATTTTCCCATG 48756 29 100.0 37 ............................. AATAATAGAACTTACACAAAGTATTAACGGGTTTAAA 48822 29 100.0 38 ............................. TTAGGAAGTAAAGTATTAGTAAAAGATACTGGAACAGA 48889 29 100.0 37 ............................. TTTAGAGCAATTAGTTAAATACTTTTCTACTGGAAGA 48955 29 100.0 36 ............................. CTATATGACTTAGTAATATTAGATAAAGAATCAAGT 49020 29 100.0 36 ............................. CTATATTAATAATATCGGAATACGAAAAAAAAATCA 49085 29 100.0 37 ............................. GTTAGAAGTCAGTTAAAAAATACAATACAAGGTAATG 49151 29 100.0 36 ............................. TTGGTGTATTGTAATGATTGTCAGAGTGCAATTAAT 49216 29 100.0 37 ............................. GGAGTAAAAACAAAAGATATAGATGCTGAATTTATAA 49282 29 100.0 37 ............................. GAAGATATACAAACAAAAATAAATACATATAGAGAAT 49348 29 100.0 35 ............................. CAATTAAAGTTATATACCCATTTATTGAACCACTC 49412 29 100.0 37 ............................. AGGAGTTTGATTGTACAATAGCAAATGTACATTACAT 49478 29 100.0 36 ............................. TGAAAGAGAACTTTAAAAAGATGAAAGAATTAATAT 49543 29 100.0 37 ............................. AATTTATATGCTTTCTTTTTAAGTAGATCATAATCAT 49609 29 100.0 37 ............................. TCTAATGTTACTGATTTTGAATGTAGTATGTATTTTT 49675 29 100.0 37 ............................. TTGTCGTTTTAGCTTCAGGTACACTAAAATCTTTATC 49741 29 100.0 37 ............................. GTCATGTTGATTGTCCCTGTCACTCTTACACACTATC 49807 29 100.0 39 ............................. CGCAATCTTTCATTTCAGCTTGTATTTCTTGTTCTATAG 49875 29 100.0 37 ............................. AAGGGAACTTCTTTAAAAATAACAGATATTAGCAGTG 49941 29 100.0 37 ............................. AACTTATTTAACGGGTATAGATTGGCAACAAGCTACA 50007 29 100.0 38 ............................. TATTATTGGTCTAACTAATTCTTTTAAAGCTACATTAA 50074 29 100.0 37 ............................. TTGTCAAAGAATCCTCCCATGTCTAGTTCGTAAATCT 50140 29 89.7 0 .......................TAA... | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.7 37 GTTTTATATAAACTATGTGATATGTGAAT # Left flank : AGGGAAGGCATTAGTGTAAAATATGTAGATCCTGCCTATACTTCACAAACATGTAGTAAATGTGGTCATGTGGACAAAGAAAATAGAACCAGCCAAGAAAAATTTAAGTGTATTGAATGTGGATTTGAATTAAATGCTGATCATAATGCTGCGATTAATATAGCTAGAAGTAATAATTATGTAAAATAAAATAAAAAAATATGTAGTCGATTCAGCGACTAAAGGTTGAGGATATAGGATTAATAGCTAGGATAACCTAAAGCTATCTATAATCACTCGATAAGGGTTAACTCTAGATGTTGTGTTACCGTCTAGACATACATATAGTTTATTTATATAAATTGCAGTGGGCGATATTTGCATATTAATATAGTGGAGAGCTTGGAATAACTAGTCTTGAAGTGTTTTATAAAGTCATATAAAAAACACTACTGGAGGTTCACTGCAAAATTAGTTGATATATGACACTCAAATCATTGAAATTACTATATATTTAGTTG # Right flank : TTTTTTATTTATAATAACCAAGATAGGAGGAATATATATGAAAAAAATAAAACAAATTGTATCATTTATACTGATTTTTAGTATTACTTTCTCAACTATTTTCATGTTAGATACAAAAGATACATATGCAGCATCTATAAAATATGTTGATAATGCTAGAAGTGGAATAACTTATTCCTATGATTTAGACAAAGATGGTAAAAAGGAAAAAATACTTTGCTTAATAGGAAATGATGAATATGGTTATACACTAGATTTATACATAAATAATAAATTAAAAAAGACTTATTCAAATTTAGAAGCTATACCTTGCGTATCAATTTATGATATAAATAAAAAAGATAAATCATTAGATATTTATGTAGAATTGGTACACGAAAGTATGTACTGTGATTTTGAAATATTAAAATACAATAAAGGAACTATAAAATCGTATACTTTTGATGATAGAATAAGTAGTTTTGATAGCGATAAAGGAATAATGAAATTATCTCAAGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATAAACTATGTGATATGTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 5636-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000024.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================== ================== 5635 35 86.5 9 A.......................-..-..A.A.... ATCGATTAA A [5604] Deletion [5592] 5590 37 94.6 56 ..................C.....T............ TTTAAAAAAGTGTAACACTTGTAATAACAAAAATCAATATATGATATATGATTTAA 5497 37 94.6 37 ........AT........................... TAAAAGATGAAAAGATTTATAATGAACAGTTTATTTT 5423 37 100.0 37 ..................................... TCAAGCTTTTAAGAACTTGATAGAAAAATAAGTAATA 5349 37 100.0 37 ..................................... ACAGCAAATACGGAATAAGGGATCAAGCAAGAGTAAT 5275 37 100.0 37 ..................................... AAGTTCCCTCTTTCAGTACATATTTCTATCCCTCTTT 5201 37 100.0 37 ..................................... TATTTTGAATATAACTGTCCGAAAGTTTATGTTGGAT 5127 37 100.0 36 ..................................... AGTTCTTGATTTATTTAATCCAAGAATAACTCCAAT 5054 37 100.0 37 ..................................... GTAAATCTATTTCAAATAATGCTTTTTCTTCGTTTAA 4980 37 100.0 37 ..................................... AAAGCAGACCAGAAGGGGTATTTATATTACCTTATAT 4906 37 100.0 37 ..................................... GTTTGCCTTATATTGTTTTAGCAGTGGTTTATACTCA 4832 37 100.0 37 ..................................... TAGTAGAATCTATGGATAATGCTAGTGGTAAAGTTGA 4758 37 100.0 37 ..................................... GTAACCTATTTGACTAGTATAATTGCTACAGTTTTTT 4684 37 100.0 37 ..................................... TAAACTCAGGCCTTGAAAAAAGTAAAACATCAACATC 4610 37 100.0 39 ..................................... CAAATCCTCCATCAGTTTGTCCAGATGTTTTACCATCAT 4534 37 100.0 37 ..................................... CTACTGGAGTTAATAGTTTAGTTGCTTCTGCATAAGT 4460 37 100.0 37 ..................................... AAGCATTTAAGGGCATGTCAGACGAACAAATAAAAGC 4386 37 100.0 37 ..................................... TCATATTATCAAATCCTTTCTGAAAATAAAAGATGCT 4312 37 100.0 37 ..................................... GAGAACTCATTTCTCCAAATACTTTACCAACACCACC 4238 37 100.0 37 ..................................... TCATATTCTCCATTATTATAATTTAATAATCTTTCTT 4164 37 100.0 36 ..................................... GATTTTTTCTTTTGAAAATTTACCATCAGGGATAGC 4091 37 100.0 37 ..................................... TTAAATACAGCTACAGAAACTATGACTTTCAGTAGTA 4017 37 100.0 36 ..................................... ACCTTTATTGCTTTTATATAAGAAATTAGGCATTCC 3944 37 100.0 38 ..................................... ATAAATCATCTAATCACTCCCTTCTTAATTTATTTGCA 3869 37 100.0 38 ..................................... TTAATTGCAGCAGAATTATTAGTGTATGGTGCAACTAA 3794 37 100.0 37 ..................................... TATATTCGAAAGTATAATAATTTTCATCATCTTCAGA 3720 37 100.0 39 ..................................... ACTACTCAACATAGTTCATATCTGCAATATATGTTTCCA 3644 37 100.0 35 ..................................... TTATTTATCTTTAAGTTATTAAGAAATTTTTCAAT 3572 37 100.0 38 ..................................... GAATTTTATTTATATAAAAAATAATAATTTATATAATA 3497 37 100.0 37 ..................................... AATAATAAAAAAGTTTTAGTCATAAATCCTCAAACCT 3423 37 100.0 37 ..................................... TGCTAGCTAATAAAACAAATACAGTAGGATTTAAGGG 3349 37 100.0 37 ..................................... CTTTTTGTATGAGCTTAGCAGTCTCATCATAAGTAAT 3275 37 100.0 36 ..................................... CTCAGCAGGTGCGACTGATTATTGGGACTCAAACGT 3202 37 100.0 36 ..................................... TACGTTTTAGAGAGTTTTCTATCTTGTCTCCATAAT 3129 37 100.0 36 ..................................... AAGGACTAGAATAATTCTAGCCCTTTTTTATTTTGA 3056 37 100.0 36 ..................................... TATAGGACTAGAAGTTGTTGCCTTTTGTCTTAAGTT 2983 37 100.0 38 ..................................... TTCTAACCATTTTAGATCTTCTTTAAGTTGAGTTTTAC 2908 37 100.0 35 ..................................... TCTTTTTGGCCTATTGCTGTATAAGGGGCTCTTCC 2836 37 100.0 37 ..................................... CTAATAAGGCAAATATAGATAATATTGATATAGCAAA 2762 37 100.0 38 ..................................... TCAGAACAAGGTACAATAGACGGCAATAAATATGTATA 2687 37 100.0 37 ..................................... CTCGACTTATATCATGCTTATAGACAAGCATATATAC 2613 37 100.0 38 ..................................... AGGTAAATTTGAAGATGGGACAGAGCTCATAGCTGAGC 2538 37 100.0 37 ..................................... CAAGATATTCTCTTATTTTAGAAATGTCTTCATCTGT 2464 37 100.0 37 ..................................... ACATTGATTTATATCCTTCCTTTTCCATTAACTCTTT 2390 37 100.0 38 ..................................... ACAGAAGAAATAAGAGAAATAATAAATTATTGTTTTTT 2315 37 100.0 37 ..................................... TGTGTAAAGAACGAAATGGAAAGAAATTTGACAAAGA 2241 37 100.0 36 ..................................... AAAGTTTGTAACTGGAATAGCATCTTCATCTATAAA 2168 37 100.0 37 ..................................... AAAACTAGGAAAGCTAGTAAAAAAGCTAATTCTAGAT 2094 37 100.0 39 ..................................... AGTGCAAGAGAAAAAACAAAAAGCTATTGATTTATTACA 2018 37 100.0 37 ..................................... TTGACTTTAACTAAGGAGGATTAGAAATGGAAGATAA 1944 37 100.0 38 ..................................... CAAAATAAAAAATATAATCAAATTTCCAATACTGTAAA 1869 37 100.0 38 ..................................... CTCCTCCATGTGATACAGGTTCGAATCCTGTGGCTTGC 1794 37 100.0 36 ..................................... ATTTTTAAACTCTGCTAATACGACTTTGTTTTCAAC 1721 37 100.0 36 ..................................... ACATCCATCTTCATTATCTAAACTATCTATTTCTAC 1648 37 100.0 37 ..................................... CAATTCTTTAAGATAGATAAAAATTGCTACAAATCGA 1574 37 100.0 38 ..................................... ATTGTTCAAAAATGTCCAAGTAAAAATAAAGTTGTATT 1499 37 100.0 38 ..................................... AGATAAGGTTAATTACGGTTGTATTGCATGGAAAGAAT 1424 37 100.0 37 ..................................... CAAACATAATGTTATTAAAAAGTGTTCATTTACTTTT 1350 37 100.0 38 ..................................... TATTCCTTCTCTTAATAGTTCTTATAGCTTAATATTAT 1275 37 100.0 37 ..................................... CTGATGAAACTCTAATAATTGAAGCAGGTATCAAATA 1201 37 100.0 36 ..................................... TACTTTTTTATTGATAGAGTAGTAGTTGTTATTCAT 1128 37 100.0 37 ..................................... GTTACGGAGAAATTAGATATTGGGAATTTGAAGAAAT 1054 37 100.0 37 ..................................... CCGAAACAGAAAAGATTAATTAATAGAAAAAATGATT 980 37 100.0 36 ..................................... GAAATATAGAAATAGGAATGGTTATTTCTGATTTAT 907 37 100.0 37 ..................................... CTTCTTCACTAAATAATTCTTTTTCTGATTTTTCCAC 833 37 100.0 36 ..................................... GTTTTCAGATGCACTTACAGAATTAGCAGAACAAAA 760 37 100.0 38 ..................................... CTTTGCGAAATGGTAGGTATTCCAGAAGAAGCAGAAGA 685 37 100.0 36 ..................................... TCCAATAAGGTGGGATTACTGGCATTTTTTTTAGAT 612 37 100.0 37 ..................................... TCGTTTACGTTCGTAATATCTACGTTTTGTTTTTCGC 538 37 100.0 38 ..................................... TCTCCGAAAGGAAGGTGTCCAGAGATGGAAAATAAAAT 463 37 100.0 36 ..................................... TATTCCTAATAAAAAAAGCCAGATTTCTCTGACTTT 390 37 100.0 37 ..................................... GGATCAACAGAATCTCCATTTCCCCCACCACTAGGAT 316 37 100.0 37 ..................................... CAGAGAGCAACTGGAAGAACTTGATGAAAGATACAAT 242 37 100.0 38 ..................................... ATTGGCTATGAAAGAGGGTGATTCCAATGTGGACTTAA 167 37 100.0 38 ..................................... TCCACCAGCGGTAACTTTACCTACCACACTGCTTGAAT 92 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================== ================== 76 37 99.7 37 GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Left flank : TTTGTGATTATAATAAAATACGATTGATTTGCATCTTTTTGAACTTCCTCGATTATATTTACCCAAACTTCATCTAGATAACTTTTGTCTATTTCCATAAACTCTAAAGAACTTGCTAATTTTTTTTCTTTTATCTTTGCTGCATCTTTATCTTTATATTTTTCTATTTTTATTCCTGCCCCAACATGTCCATTTCCTTGTTGATAAATTAATGCGTCTTTATAAACATCTTTGTAAAAACTTCTTAACTCCTTGGTGACTTTTCTTTCTCCTTCATCTATATTTATGAAGATCACATTATCCATCGGTTTCGTGTCTTTAGTCCATAATTCAACTAAATCCTTCTCACCATCTATAATTCTCACTTCATGACCTATATTTTTTATTTGCTCTATCAAATAATCACCTCCTGCAAAGGATATTAATAATTACATATATTAATAAAACCTTATATTTAGATAATAGTCCTATTGTTATTATATGTCAATAAATGTTTTTAA # Right flank : CATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAACGTTTTAATCCTTGTTTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 15276-12204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000024.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15275 37 100.0 36 ..................................... TCCATTGTATGTACATTCATAATACATTCCGTCGAA 15202 37 100.0 37 ..................................... GCTCAGCTCTAAAACTCCAAAATAATGCAAGAAGAAA 15128 37 100.0 38 ..................................... AGCTGGTTAGATGTAGGAGAAGAAATAGGTTACTCAGA 15053 37 100.0 37 ..................................... CTTTATCGTTTTTATCTAATATCCAGGGGTAATACCC 14979 37 100.0 39 ..................................... ATTTACCATTAACTTTTGTTCCATTTGCAACTACGTTGT 14903 37 100.0 36 ..................................... CGGAACTCTAGAAAGTTATTTAAGAACTAAGTTTGC 14830 37 100.0 38 ..................................... AAATTTTTAGGTCCTGCTTTACAAATTAGATATTTACT 14755 37 100.0 37 ..................................... GAATATTACATCTTACAACAGGTGGAGATACTGCAAA 14681 37 100.0 38 ..................................... TTTTACATCTGGACTAAAAAATACTTCATTATTTATTC 14606 37 100.0 37 ..................................... ATAGAATCTACTCTAATTCCATTATTGTAGTTGTTAC 14532 37 100.0 37 ..................................... TTTTAGTCTTCCCCCTTTACGTTTCAAACTAAAAAAG 14458 37 100.0 37 ..................................... TCAATGATATCTCCACTTTTACCACAACCAAAACATT 14384 37 100.0 37 ..................................... ATTCATAGGATACACAGATTGGAATCAGATATCTATA 14310 37 100.0 36 ..................................... AATAGAAGAAACATGGATATATAAAAAATAATATAG 14237 37 100.0 37 ..................................... CATTTACCTGTAACTGTACAAGGTGCTCCAGCATTTT 14163 37 100.0 38 ..................................... CAAAATGGGGTTAATTAATCTCTTAGAAGAAGGTCGAA 14088 37 100.0 36 ..................................... ATCTTTATTTTTATTATTCATATCATTAATAAATAT 14015 37 100.0 37 ..................................... AGAACAACTTTTGTTATAGTCTTGCCTTGTAATTTAC 13941 37 100.0 38 ..................................... TTTCAAAACTTCAATCGGAACATATTCCTAATTAACAA 13866 37 100.0 37 ..................................... TGGGGAGGAAACAATACAGAAGAAATAAGAGAAATAA 13792 37 100.0 38 ..................................... CCAGAATACAGATTAGAAGAATCTGAAAAAAAATGGGC 13717 37 100.0 37 ..................................... TATCTTTTTTATCCTTTTTATCTTCTGAATCTTTTAT 13643 37 100.0 37 ..................................... AAGAAGTATTGCAACAAGCAAGGAGGCTTTGTTCATG 13569 37 100.0 36 ..................................... AGATATAAATTATGATGAATTATCATTTTGTAAGTA 13496 37 100.0 37 ..................................... GTAAATCTATCAGTTAAATTTTCAATAAAACTATCAA 13422 37 100.0 36 ..................................... TGGGAAAGGAAAAGTAACAGTTATACCTACTACTGC 13349 37 100.0 36 ..................................... ATGAAAAACTTAAATGGATGAGGTATGATACATATT 13276 37 100.0 37 ..................................... ATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAAC 13202 37 100.0 37 ..................................... TAACAGAGTTAGAACTATCTTTTACAGATTGGGAAAA 13128 37 100.0 37 ..................................... TATTTTACATTTACGAGAAAAAGCAGTTATTTTAGAA 13054 37 100.0 36 ..................................... CTGAATCCAATAATAATGAAGTCGATATAGATAAGT 12981 37 100.0 38 ..................................... CCAAGCAGTAAAACTTGTTCTAATTGTGGTCATATTAA 12906 37 100.0 35 ..................................... AAAAGGAGGGGGGATAATATGAATTTAACAGAAAA 12834 37 100.0 36 ..................................... TTTTAGGAATTGATGATACTCTAGCAGATGTATTTT 12761 37 100.0 37 ..................................... GGATAAATCTAAATTTTCTGTATTGCTCTGCCATATG 12687 37 100.0 40 ..................................... AAAGTTACTGCTGGTGGAGCTTATACTGTAGTAGAAACTA 12610 37 100.0 37 ..................................... TGGAGAAATGAATTCTCTAGCCTTTAATGTGTTATAA 12536 37 100.0 38 ..................................... AAATTGCGAATTTGATGATGTTGAAAAACAACAATCAT 12461 37 100.0 37 ..................................... TACTTGGCAAGTTTTGTATTGCACTTATAACATTTTT 12387 37 100.0 37 ..................................... AGACAGATTAGAAAAATAGAAAATGCATTGGAGTTAT 12313 37 100.0 36 ..................................... CCACCCAAGAGACACATTTGAACTACCATCTGCTTT 12240 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 42 37 100.0 37 GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Left flank : AGCATCTTCAGAAGTAG # Right flank : ACGTAGAACCTAAAACCATTGGAATTACTGATTTTCAATGTGTTGCTTTATTTTCATCTAACCTCAAAACAATGATTTTCCATTAAAAAAATGCATTTTTTAGCTTATTAACATCTATCTCAAACCAAGTAATTCCAACACATTCAATTGTCAAAGTTCAAAGTTTCCAATAATTTTGTAGGAACAAAACTATTAAAAATCTTTTTTATATCTTTTTTACAGTTCCAAATCCTCTCGATATTCCTTTACCTATTGCAAAATTATCTGGTATTTCAAAGTTTATAAAAAACTCTCCTATAAAAGCTAACATTTCTTTTTGTTTAAATTTAACATCTATTTGATTTAAGTCTAACTTTACTTTTATAGTTTCGTCAACTGTATAATCCATTCCTTTTGAAAAAGACAAAATATTTCCTATAAGTACTCTTTTTAGTATTTCTTCTTTTTCTATTAAATCTGCTGCTGTATATTTTTTAATATTATTTTGATTTAAAGCTAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 247384-246383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000004.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 247383 37 100.0 37 ..................................... AATATTCTTTAATATTTATCCATTTATTTAATTGATA 247309 37 100.0 36 ..................................... ATGTTAAACGATTCACCCTTGGGAGGTGTCACGCAC 247236 37 100.0 37 ..................................... TATTGAATGCATATTCTTGCCATTCATATATTTTATT 247162 37 100.0 36 ..................................... AGTAGTAGAAGCATGGAGAGGGTTTTAATCCTTGTT 247089 37 100.0 37 ..................................... GTCAGCATGCCTTTACACTGCTCACACAATGCTATCC 247015 37 100.0 38 ..................................... ACAAGGATTAATTGATATTTCAGATGAAGGTATAAGAA 246940 37 100.0 37 ..................................... AGTTCAATAAAAGAAGAAATAGACATAACAAATTTTA 246866 37 100.0 37 ..................................... CAATTAATTTAGAGGAAGAAATTGGAATTATAAAAGT 246792 37 100.0 38 ..................................... ATAGCTTCTTTTTGCTTATCTGAGATATCTTCTAAAGG 246717 37 100.0 36 ..................................... GGTGTAAATCCTTGCTCTTGGCTTGCATATACCTCA 246644 37 100.0 38 ..................................... ACTTCTCCACTTAATATCTTACATTTATCAGTTACCTT 246569 37 100.0 37 ..................................... CTATTTGAGTTGGAGTTAATAGTGTTTTTTTATCTTC 246495 37 100.0 39 ..................................... TGTCGTCCAAATATAAAACTATTGGATCTCTGTATTCTA 246419 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 37 GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Left flank : ATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAA # Right flank : TCGTAACACCTAAACACATTGAAATAACTAGTTTGTAGCGATTATATAATTTTTAAACTTATTAAAAACCATCTTGTTTTTAAATAAAATAAGTCAATTTTTTGTTATCAACACCAACTCCAAATCAAGTTATATCAATGGATACATAGATTAGGATTATATTTTTTAAATAATTTTACAATAACAAACAAAATTATTAATCAAAAAAACTTTTGAAAATTTTTATATCTAATTATAGAGTATCATACTATTTATAAAAAATACACAGATTTTTTATAAATAGATTTAGCTAAATCATATTTTAATAAAGTATGTATATATATCAATAAATTTGAAAATAATTCAGCTAAGTAAGAGTCAAGAGTCCTTATCGTAAGTATCTATATTTTCCTTTTTTAATAAATAACTCAACGTACTCTTGCCTGGATTTTACCTAGCTGTATATCTTTTATTAAAATTTTAACCTTTATTTGTATTACCTGCATTTTATTTCCCCCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1-2929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000006.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1 37 100.0 36 ..................................... TCTACTTCTGAAGATGCTGAATCCAATAATAATGAA 74 37 100.0 36 ..................................... AAAATATTGACAGCTTTTTATGCTGGATTTTTCTTA 147 37 100.0 39 ..................................... TAGCTTCTTCTCTATATGTATACTCTTGTATTTCTTCAT 223 37 100.0 36 ..................................... GCTAAAGCAAGAACAACAGAAGATAATACAAAGAAT 296 37 100.0 37 ..................................... TTATTTTTTTTATGTAATATAAGCAAATTTTCTTTTC 370 37 100.0 37 ..................................... ATACCTAATTTTGCATCATTAAAGTTGTTTTTATTTC 444 37 100.0 40 ..................................... GAGCTATTATTCTTACCCCATTATCACATTTTGTACTTTC 521 37 100.0 37 ..................................... GCTTTTCCAAGTAAACTATTTTCTTCTTGATCTATAC 595 37 100.0 36 ..................................... AAAGAATTACATGTTGGAACTGTCTATACAGATTAT 668 37 100.0 37 ..................................... TCATCCATGTTATTTTTAAAACTCAATTGGATTACGG 742 37 100.0 36 ..................................... TCTACTTCTGAAGATGCTGAATCCAATAATAATGAA 815 37 100.0 38 ..................................... GTTATAACTCCCTCATATTGTTTTAAAGCTCCTATTCT 890 37 100.0 39 ..................................... TGACAAAGGATGAAGTCTTAGAACATGCAAAAAGATTTT 966 37 100.0 36 ..................................... GTTTTAGATATTTCTCTAACAGAAAAAAAGCACCAA 1039 37 100.0 39 ..................................... AAGATATTGCGAACCAACAACCAACTGATTTGTCATTAG 1115 37 100.0 37 ..................................... TAGATAAGACAGAAGAAAAAGACTATACACAGACAGA 1189 37 100.0 37 ..................................... AATTTCTTTGTTCTCTCATAAGTTTCTCCTATCTATG 1263 37 100.0 38 ..................................... TATCTAGTTAATTTTTCACATATGGATAAACAAAATTT 1338 37 100.0 36 ..................................... GAAAATTTACTTCATGTAAAAAAGTAGATCCTTCAA 1411 37 100.0 38 ..................................... TATCTAGTTAATTTTTCACATATGGATAAACAAAATTT 1486 37 100.0 36 ..................................... GAAAATTTACTTCATGTAAAAAAGTAGATCCTTCAA 1559 37 100.0 36 ..................................... ACTGATGTTGATGCAAGTAAAAAAGATAGTGAAGAA 1632 37 100.0 36 ..................................... AAAAGCTACATGCATTAAGACATTCTCATGTTTCTA 1705 37 100.0 38 ..................................... AAGAAGCTTACATAAAACAATTTAATGCTATGGAAAAA 1780 37 100.0 39 ..................................... GAGGTTTTGATATTGTATCTATCCTAAAAAGTTGTCCTT 1856 37 100.0 37 ..................................... TTTGTTCTTTGATATTAAATTTCATCTTATTACCTCC 1930 37 100.0 39 ..................................... TTATTAAAACATTACCTTCCTGGATGGAGAAATTTATGT 2006 37 100.0 36 ..................................... GACGATTTCCTAAAAGGCGAGCCTACAATAGCTGAT 2079 37 100.0 37 ..................................... CTACCTGTTTCTTGTGCTTTTGATAACATATTACTTC 2153 37 100.0 37 ..................................... TACTTATTTTTACTTTTTAAAAATTCATTTATTATTT 2227 37 100.0 38 ..................................... GCTCCAGATATTTTTCTTTTCCAATCTCCTGATGTTTT 2302 37 100.0 37 ..................................... TTTTTTTTGAAAAATAAATAAAATTATAATGTATAAT 2376 37 100.0 37 ..................................... AGTTTTTACAATATACAAAAGATTCTTCTTCTATTTC 2450 37 100.0 37 ..................................... ATAGGAGAACCTATGACTTCATATACTATAAATTATT 2524 37 100.0 37 ..................................... AGTGAATTAGGTAATATTATTTCTTTTAAATCATGAC 2598 37 100.0 36 ..................................... ACTATCAACATGCTCCTAAACGAGGCAAACATTGGG 2671 37 100.0 38 ..................................... TTTTGAAAAAGGAGATATGTGAAATGAAAGATGTTTTA 2746 37 100.0 37 ..................................... ATAACAATGCTGTTAGAGCAATCTATGGGGCTATGGT 2820 37 100.0 36 ..................................... TTACTTAATTTTTTATATTTCTTTCCTGTTTTATCA 2893 37 94.6 0 ...................................TA | ========== ====== ====== ====== ===================================== ======================================== ================== 40 37 99.9 37 GTTAAAGAGTAAGTTCCATTAAAACAAGGATTAAAAC # Left flank : | # Right flank : ATCAAAAATGAAAAATATATTGATGTTTAAGAAGGAATTTGTCATATACTAGCAGAAATAATAAAATTAAGTAATATAAAAACTAAAGAAGGTGATATTAAGCTATGAAGCTAGTTGTTAATTCGGAAGGAGTATATTTGACTAAAGTAGGCGAATGTTTTTGTTTGAAAAAAGAGGGGCAGAAACAAGAAATTGCTGCTAAGAAGGTTGAACAAATAATTATAACGACATCTACAGCTTTGTCTACTGATGCTATTGAGTTAGCTGTTGAGAATAATATTGATATAGTGTTTTTAAAAAAGTATGGAAAACCTTTTGGAAGAGTATGGCATTCTAAAGTTGGTAGCATAAGTACTATTAGAAAAAGACAGTTAAATTTAGATTCTAATAAAATGGGTACAATTTTAGTAAAAGAGTTTTTGACTCAAAAGATGACTAATCAGGTTGAATTTTTAAATGAATTATCTATGAATAGAAGAGATAATAGAAAAATTGAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGAGTAAGTTCCATTAAAACAAGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 79542-78785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000016.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 79541 29 100.0 37 ............................. ATGAATGGTTTAACTGATGAAGAAATATTAGAAAAAA 79475 29 100.0 37 ............................. GTATTATTTTCTATTAGTCTTAACATAGTTGCTACAC 79409 29 100.0 37 ............................. ATAGTAACAAAATAAACAATAAACTTTCTAGCATGGA 79343 29 100.0 37 ............................. ACTTATTTGTCATGGTCCAAAACTGCTAATCTTACAA 79277 29 100.0 37 ............................. GCAGTAAAGAAAAACGAAGATAAGCTAGATAAAGAAT 79211 29 100.0 36 ............................. CATACTAAAAAACTACTTTTAGAATATGCAAATAAA 79146 29 100.0 37 ............................. TTATTAATAAAAAGTTGTAGAGGTAAAAAAATGACAA 79080 29 100.0 38 ............................. TTTACCATACTTATACATACAGATGGTACTGCTCAATC 79013 29 100.0 38 ............................. CTAAATCAAGACTTTATAGAAAATCCAATAGCATTTAA 78946 29 96.6 37 .......................A..... CTCATGCACATCATGTTTATAAAAATCGTGGGAATCA 78880 29 100.0 37 ............................. TTTGAAAATGATGAAAAAATATATAATTGTGATGAAA 78814 29 96.6 0 .......................C..... | T [78787] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GAACAGACATATTAAGTCTT # Right flank : CAATTTATAAAATAAATACTATATATTAAGGGGAAAGAAATATTATGACAAGAGTAGATATGTTTTATTTAATATTAGTTGTAATTATTGCTATAGCGTGCTTGTTTTGGAAATTGGGTCCTAACTTCTTTGTGAAAAGATTAAATAAAAAAAGTATTTATTGTGAGTATTATTTTATTTTCAACTATTTTAATTGTTGTTACATGTGCATTAAAAATAGAATTTAGAAAATCCTTATGGAGTTATTAGAAAATAAGAATTAAAAAATAAATAAGTTTTTCACAAATATTGTATTATAATATTTTTAGAACACAGTATATATGTGAATCAAAAACAAGGGGGATAACACAATGATACTAGATACTAATAAAATTGAAGAAAAAGCATTGGCAAATTTTAAAGGTGGAGAAAAGGCATTAAATGCAAGAATGCATGTAGACGAAAATAATAAAATAATCTTTGGAAGATTAGAACCAGGGGCATCAATAGGGGAACATACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1348-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000007.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1347 29 100.0 36 ............................. AGTGAAATTTTAAGGATAAAAGACGAATATGTGGCT 1282 29 100.0 36 ............................. TAGATTAAAAGCTTTATAGCATTTTGAAAATATATA 1217 29 100.0 36 ............................. AAGATAAGCTAAATCGCTATGATGAAATAGTTGCAG 1152 29 100.0 37 ............................. GCAAGTAACGGAGAAGGAACAGACATATTAAGTCTTA 1086 29 100.0 37 ............................. ATGAAATAGACACAAAAAAAACTACAAAAGCTAGTAA 1020 29 100.0 37 ............................. AAAGTGAAAAATTGCATTTTAAAAGAAATTGAAAAGA 954 29 100.0 37 ............................. TCTGCTATAGCATTTCGAATAGCATCAGGAAGTGTTA 888 29 100.0 37 ............................. TCTATATATCTAGATGATTTTACTCCTATTTCATCAA 822 29 100.0 37 ............................. CTTGATGAACTACTTAAAAACGCTTCTGGATTTACTA 756 29 100.0 36 ............................. ATATTAGAAGAAGGTAATAATAATATAACTTGGTCC 691 29 100.0 37 ............................. GCATTAATTACATCAGCATTTAGGGAGCCTATAAGAG 625 29 100.0 37 ............................. AAGCTTCTTAGAGATAACTTTGCAATATCAGTACTTA 559 29 100.0 36 ............................. TGTATCTTTATATGTTTTGCATGTTTTTGCTTTTTC 494 29 100.0 37 ............................. TTTTACAGTCTAACTCTTAGAACAGACCTTTACAGAA 428 29 100.0 37 ............................. ACATCACTTCTTAATCTATCTATTTCAACGCCTTCTC 362 29 100.0 37 ............................. TTAAATGGGCAAGTAACAGTATATGCAAAACATATTT 296 29 100.0 37 ............................. AAGCAATACTTATAATAAAACAACTCAATGGGCATCA 230 29 100.0 36 ............................. TCTTATAGTATAATAACTGTAAAGGGGGTGAAAAAG 165 29 100.0 36 ............................. ATATTTTTACATCCAGTAGTAGAACAATACAAGAAA 100 29 100.0 37 ............................. ACAGGTAACGGAGAAGGAACAGACATATTAAGTCTTA 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 100.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AACATTTTATAGGTGATGAAAAATATAAAGTATTGAAAGCATGGTGGTAAAATGTTTGTTATTATTACATATGATATTGCAGAGGCTAAAATATTGAATAAAGTAAGGAAGACTTTAAAGAAATACTTAATTTGGACTCAAAATTCTGTATTTGAAGGAGAAATACTTCCAGGAAAATTACATAAATGTGTGAGTGAACTCGAAAATATTATAGATAATGAAGAGGATTCGATTTATATTTATGAGATAAAAAATAGTAAAAATATACAAAAAAATATATATGGAATTCATAAGAATTTTGATGATACATTTATATAAATTGCAGTGGGCGATTTTTTAATAAAAATACTTCCAAAGTATTGATATTACTTTGTTGGAGATCGGTTTATATAAAAACAAAAAAACACTACTTGACCTTCACTGCAAAATTCAATATATTGATATATTTTTTATTGCTATGATATAGTAATATCAAGGGATATAAAAAATTATTTTTTGGG # Right flank : TATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 14392-11769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQF010000007.1 Intestinibacter bartlettii strain MSK.17.41 NCOOFJGN_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14391 29 72.4 6 ...A....A...A.C.AA..A..T..... AAAGGG C [14384] Deletion [14357] 14355 29 100.0 36 ............................. TTCTTATATAAAAAAGAACTGTACCGCTACAGTCCT 14290 29 100.0 37 ............................. TTACTTGGATTAAATGTATTAATAGCTTTTGCTAATC 14224 29 100.0 37 ............................. ATATTATTATTTTAGAATTATATATTGATTTTTGTTT 14158 29 100.0 37 ............................. ATCCATCTTCCTTATATTCTTCAGTTTGACTAAGTGG 14092 29 100.0 37 ............................. TAGAAAAAGACGATGTAAAAGTAAGTACATTCTTATT 14026 29 100.0 37 ............................. TCGTATATGTCATATAGTCTTAGTATATCGTTCATTT 13960 29 100.0 36 ............................. TCATTAATAAAAACAGAAAAGAAAAATGGATTTTAG 13895 29 100.0 36 ............................. TTAAACAAGAAATGAAAATTTTTGGCATCAAATTAG 13830 29 100.0 37 ............................. AGTTATAATGCAGATACTGAATATCTAGTAATAACAG 13764 29 100.0 37 ............................. AAGTTTGTATCTGACATTATTTACCCTCCTTTCTTTG 13698 29 100.0 37 ............................. GGAGAAAGAAGGAATAGAAGAAGTATTAGAAAAATTA 13632 29 100.0 37 ............................. ATTTTAGATACATCAGGAATAGCATTTGAAGTAGAAC 13566 29 100.0 36 ............................. TATTTTTCTACTATTTCTCTTGTCATTTTGTGAGCT 13501 29 100.0 37 ............................. GAGTAAATATAGCATAATCTTTTTTATAATCTTCTAA 13435 29 100.0 37 ............................. GTTAAAAGGCTAATCATTATAGATATTGAATCTCTTA 13369 29 100.0 36 ............................. AATTTCGATAAGTCTGTAGGATCTAAGAAAATATAT 13304 29 100.0 36 ............................. CCAAGACTTTCATTTTGTTTACAGAAGTTTCATTTA 13239 29 100.0 37 ............................. GGGGAAAAGATGGAGATTATACATAAAGTATATCAAA 13173 29 100.0 37 ............................. AGTTTTATATACATTTGATAATTTTAAAAAAGCATTA 13107 29 100.0 37 ............................. TATATAGAAAGTAAGGATTACACTTCTATATTGGCAG 13041 29 100.0 37 ............................. GGAGGAAGGGGAAGAATAATGAGAAGACATAAAGTCA 12975 29 100.0 36 ............................. GATCATAAAATTACAATACAGGGTTTATCTACTCAA 12910 29 100.0 37 ............................. CTATAAAAATAAACAACTTAAACTCAAAGAACTTCAT 12844 29 100.0 36 ............................. TATAGACAATAAAAATGTAAGAAGCAGAGATAAGGG 12779 29 100.0 36 ............................. TTTATTGGTGGGGTAAAAGGGGGATAACAAATGAAA 12714 29 100.0 36 ............................. TTCTTTGTATTTCGTTCTGTTTCGTCATATTATATA 12649 29 100.0 37 ............................. GATAAACTCATTGAATATTTAACTAAATCTTCATATG 12583 29 100.0 37 ............................. TATTACACTCTTGAAAGTCATTGTATTCTAATATATT 12517 29 100.0 38 ............................. TTAAAATTTTCCATTGCCCATAAAGCGAAGCTTAATGA 12450 29 100.0 37 ............................. TCATGGGGAGGCTACTGGTGTTGGAACGATGATAAGA 12384 29 100.0 36 ............................. GTAATATAAACTAATTCTAGCAACGAGGAATCTTCT 12319 29 100.0 36 ............................. ATAAAAACATGGAGGAAGGTTTTGATTTACTGAAAC 12254 29 100.0 36 ............................. TCTTTTTCTGGTACAAAGCAAAATCCACAATTTCTT 12189 29 100.0 37 ............................. GTGATCGACAAGACAGATATGAATGAAGTGTACATAA 12123 29 100.0 37 ............................. TTATATGGAAAATCTTCTTCATAAATAGAATATTTAT 12057 29 100.0 35 ............................. ATTTTTCCCCATAAATTTCCTAATTCAAGTTCTCT 11993 29 100.0 36 ............................. AAAAAAGAAAAGGAGGCGCGAGAAAATGCGCAAAAA 11928 29 96.6 36 ............................A CGTATAATTGGAGCCCACGCATCAACAAAACCAAAA 11863 29 93.1 37 ................A...........A TATTTTAGGTATAAGTGAAGATTTATTTTGGAATATA 11797 29 79.3 0 T...........GC.T........CG... | ========== ====== ====== ====== ============================= ====================================== ================== 41 29 98.6 36 GTTTTATATTAACTACGTGATATGTAAAT # Left flank : ATGCTAAAAATCATCTAAAATCTATTGAATTTGGATTTATGATTAGTAGTCTTACACCATACTGTTGTTGCAAGGATATGCTGACAAAATCTCAATATATCGTAGGTGGAATTATGCCAACTGTACTCTTAGGAATAGTTCCAGCAGTAATATCAATTTTCACAGGTTCATTATTTTGGTTTATTATGGGTGAATTAATGATTTTGGCAGGTGGTGGAGATTTGACGATTTTATTGAAATTATTGAGATATAAGAGTAAAAAAGAAGAGATCCTTTATATGGATCATCCGTATGAATGTGGATTGGTTGTATTTGAAAGGGAAAATAACAAAATTTAAAAATATTAATAGATTTGCAGTGAGCGATTTAAAAGAAGAACATATGTATAATTATTGGAAATACTGTGTTTGAAGGGTGTATTTTGGAATTAATAAAAAACACTACTTACACCTCACTGCAAAAATTATATTTATTAGGTAATTTGATTAGGCTATAATATT # Right flank : TGGGCACATGATAGAGGAAAGATAAGATATGCTGAAGATTTTATATTATCTATATGACATAGGTAAAAAATATAATTGATAAGAAATTAAATTATATTTTTTAACAACTATATTTTATCTATGCAAAATATTAAAAATTATTTACTATAGGAAGCTAGACTAAGTTTCAAATCTTCTATAATATCCATTTTAAGATTTTCAGGTTCTATAACCTTAACATTACTGCCCATACTTAAAATCCAACTTTTAATTTCATTATAGCCCCTCATATTAGCCTCGAAAAGGATGTAATCATCAAAATCGGTTATTTTTTGATTATCTACCCAAATTTTTTCTTTTATTATGTACCTAAAATCATTTCGTATTTCTAAAATAACTTTAATTTCATTACCCTTATAAATACCAATACAATTTTTTATATAATTTTCACTTGAAAAATTTTCATCTATGGAATAGTTTTCTTCTAAAGTATTATATTCTTCAATTCTACAAATTTTAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTACGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //