Array 1 2-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000122.1 Fischerella thermalis WC344 NODE_934_length_895_cov_29.253632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2 37 100.0 40 ..................................... CAAATACGAGCAACGAGCACACTTGCCAGCGCTAACTTTG 79 37 100.0 35 ..................................... CGATTGAGCAGAGTAATCCTCCTTCGTGCCAAATA 151 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AG # Right flank : CNNNNNNNNNNGGCGCGATCGCGATAGGTGAAGAGTAGTTCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAANNNNNNNNNNCTGATTCAGAGCGCGCTGATTCAGAACGCGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGCGATCGCGCTTTTCTTGCTTTTATCAAAGAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAANNNNNNNNNNAAGCGGTTGTGGAGATTGGGAGGGTGGGGATTGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTGAGCTTGGTGGGAAGTCCAGGAGCGCGAGTTCGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACNNNNNNNNNNCGTAGCTGCGCTCAATCGTGCCTTTAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAAACTTAACCATGCTCCTAGCCGCTCCGATACGTTGCAACT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 384-567 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000122.1 Fischerella thermalis WC344 NODE_934_length_895_cov_29.253632, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 384 35 100.0 43 ................................... NNNNNNNNNNAAGCGGTTGTGGAGATTGGGAGGGTGGGGATTG 462 35 100.0 36 ................................... ACTGAGCTTGGTGGGAAGTCCAGGAGCGCGAGTTCG 533 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 3 35 100.0 40 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAA # Left flank : AGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAAATACGAGCAACGAGCACACTTGCCAGCGCTAACTTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATTGAGCAGAGTAATCCTCCTTCGTGCCAAATAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGGCGCGATCGCGATAGGTGAAGAGTAGTTCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAANNNNNNNNNNCTGATTCAGAGCGCGCTGATTCAGAACGCGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGCGATCGCGCTTTTCTTGCTTTTATCAAAGAG # Right flank : ACNNNNNNNNNNCGTAGCTGCGCTCAATCGTGCCTTTAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAAACTTAACCATGCTCCTAGCCGCTCCGATACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCGCCAGATTACTCGCCCATCGCGCGGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTGTGGACACCTTTATGGCATATAGGTGGGCATACAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1-826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1 37 100.0 35 ..................................... TAAGACCCGGCAGCGATCGCTCTGTTTTTTAGAGA 73 37 100.0 32 ..................................... CCGTGCCAGCTCAGCCTGCCTAAGCGCGGTCG 142 37 100.0 39 ..................................... NNNNNNNNNNTAGGTAGATGGAACCGGATGGAGGCAGGC 218 37 100.0 34 ..................................... GATCTCCACAAAATGCTTCGTGGAGAATCCGCCC 289 37 100.0 37 ..................................... NNNNNNNNNNGCGACCCTTCGCGGAAGATTCTTCGAT 363 37 100.0 32 ..................................... TTGATTTTCTCGCTCACACCACCCAAAACGGC 432 37 100.0 34 ..................................... GCCGAGAATATTTCTCAGCAACTAGCTCCGCCAA 503 37 100.0 36 ..................................... CTGGGGATACAGATTCGCCGAATAGAGGGGTGAGGG 576 37 100.0 34 ..................................... TTCCCCGCCAAGGCGATCGCTTGCAGTTGCTGGA 647 37 100.0 34 ..................................... TCTAGGACATACCTTACCTGCCCTCTATAGCTTT 718 37 100.0 35 ..................................... TATCAGCCTTATCAGCCCATTCCAGGCATCATTGA 790 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CTGAAAAACCCACCGACGAAAGTATCCACTCTGGCGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGACTTCATTATCGGAGGCTGTGCCTGCGCTGGATGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTTTCCAAGCCTACTTTTAAGCCACGCGGAAAGATGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAANNNNNNNNNNGAAGCCAGAGCAGGGATTATTGCCAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGTTCGAGCGCGATCGCCCACAAAACCCAGCCTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAATTGGAAGCGTGGTTGCGGAGCAAAGGAATAATTCAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGGAACCTGCGGAGTAGCTCCTCCGATCGCCAAGTTGCAACTTAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 944-1871 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 944 36 100.0 36 .................................... CCTTTCCAAGCCTACTTTTAAGCCACGCGGAAAGAT 1016 36 100.0 37 .................................... NNNNNNNNNNGAAGCCAGAGCAGGGATTATTGCCAAT 1089 36 97.2 38 ..............T..................... CTGCGTTCGAGCGCGATCGCCCACAAAACCCAGCCTGA 1163 36 97.2 41 ..............T..................... CAAATTGGAAGCGTGGTTGCGGAGCAAAGGAATAATTCAAG 1240 36 97.2 35 ..............T..................... CGAGGAACCTGCGGAGTAGCTCCTCCGATCGCCAA 1311 36 91.7 38 ..............T...................NN NNNNNNNNGCTATTTGGCGATCGCGGCGATCGCATATC 1385 36 97.2 41 ..............T..................... CTCCCGGAGACCCACGAAAATGAGACAACTCATGATGGCAA 1462 36 94.4 38 ..............T....................N NNNNNNNNNGTCGGTAAGGCATAGTAGACCTCCTAACG 1536 36 100.0 39 .................................... CCCTTGGGGGCGGTATTTCCTCTCCCATGATGGGGGAAA 1611 36 100.0 49 .................................... NNNNNNNNNNCATCTCGTACAACTCGTCATCCTCATCCGGTCTCCTAGG 1696 36 100.0 35 .................................... CGCCCATCGAGGTAGGCAATCTGCAAGTACTGCTT 1767 36 100.0 33 .................................... CTCCTGGAGGACATTCTCGGAATCTGCATCCAA 1836 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 13 36 98.1 38 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAA # Left flank : ATTAATCCCTATTAGGGATTGAAACGCCGAGAATATTTCTCAGCAACTAGCTCCGCCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGGGGATACAGATTCGCCGAATAGAGGGGTGAGGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCCCCGCCAAGGCGATCGCTTGCAGTTGCTGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCTAGGACATACCTTACCTGCCCTCTATAGCTTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTATCAGCCTTATCAGCCCATTCCAGGCATCATTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGAAAAACCCACCGACGAAAGTATCCACTCTGGCGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGACTTCATTATCGGAGGCTGTGCCTGCGCTGGAT # Right flank : ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGTATCGGAAAGCGAATGCCTCCGGCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTATGCCTACACCGCCGACAGCTGAGCCAGGGAAGCTGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGAAAGGATTTGATCCATAATAATGAGAGAAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCCAAATCGGAGCTTGGCTTGGGCGGTTACTAGGTTCTAGTTGCAACTTAAATAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAA # Alternate repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 2125-2682 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2125 37 100.0 41 ..................................... TTATGCCTACACCGCCGACAGCTGAGCCAGGGAAGCTGCAA 2203 37 97.3 40 ....................................N NNNNNNNNNAGAAAGGATTTGATCCATAATAATGAGAGAA 2280 37 97.3 38 ..............A...................... CCAAATCGGAGCTTGGCTTGGGCGGTTACTAGGTTCTA 2355 37 97.3 42 ..............A...................... NNNNNNNNNNACCCCGGACTCGGCACCGATAATGCTGATGGA 2434 37 100.0 33 ..................................... GGAGCGCTTTCTAGGAGACAAGCCATGAACCAC 2504 37 100.0 34 ..................................... ATCTGCCGGGAGAGCTGGATCGAGAAGCTAGCTG 2575 37 100.0 34 ..................................... AAGTAAAAAGATGTCGGCTATCAACTGGACTAGC 2646 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 99.0 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AAATCCCTATTAGGGATTGAAANNNNNNNNNNCATCTCGTACAACTCGTCATCCTCATCCGGTCTCCTAGGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGCCCATCGAGGTAGGCAATCTGCAAGTACTGCTTGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTCCTGGAGGACATTCTCGGAATCTGCATCCAAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGTATCGGAAAGCGAATGCCTCCGGCAC # Right flank : CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGATCGCGCTATCTGAGCGATCGCCATGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACNNNNNNNNNNAGTAGAACTCGTAGACGGCAGATAGACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTCGTACGACCACTGCTTCATCTCCACTAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAAAAATCTCAGGCTAGACTGGGGGATGTAGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCTGCCCTCTGGGCACGAACCGAAATTTTTTTAATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCTAATGCCGAAACGAGAATGATGGGAGAGGTTGCAACTTAAATTAATCCCTATTAGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 4 2786-7722 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================== ================== 2786 37 100.0 38 ..................................... NNNNNNNNNNAGTAGAACTCGTAGACGGCAGATAGACT 2861 37 91.9 37 ..........C...T.....................N NNNNNNNNNTCGTACGACCACTGCTTCATCTCCACTA 2935 37 94.6 32 ..........C...T...................... AAAAATCTCAGGCTAGACTGGGGGATGTAGAA 3004 37 94.6 35 ..........C...T...................... CCTGCCCTCTGGGCACGAACCGAAATTTTTTTAAT 3076 37 94.6 39 ..........C...T...................... NNNNNNNNNNCTAATGCCGAAACGAGAATGATGGGAGAG 3152 37 94.6 43 ..............T.....................N NNNNNNNNNTCCGGTGTGGTTATCACTGCCCATTCTGAGAGTG 3232 37 97.3 35 ..............T...................... CGACTACGTACCCAATGACGTGCTAAATACCACTC 3304 37 97.3 41 ..............T...................... NNNNNNNNNNGATCGCGGGGTTATACCCGCTTCCCATCACT 3382 37 100.0 43 ..................................... CTGGGGCAAGTGGCATTCCACTCGCTCTACTACCGCCTACCCG 3462 37 100.0 44 ..................................... NNNNNNNNNNAATTGCAAAGAGCATCATCAGAGATCTTAAAAGA 3543 37 100.0 41 ..................................... GTGAACGCGCTGACTCGCACTTGGGGCGCGATCGCGTCGTT 3621 37 100.0 41 ..................................... NNNNNNNNNNACAGCCATCTGCGAGAAGAGCTGACCCCAGA 3699 37 100.0 33 ..................................... AATAAGCATCCGGATTGGGTCGCCAGTTCTTGG 3769 37 100.0 35 ..................................... CACGACAACACTCAGAATCAGATGATGATGATGCC 3841 37 100.0 34 ..................................... CCCTAAACGAGACCCCAGTAACCCCATATATGGG 3912 37 97.3 42 ....................................N NNNNNNNNNCGAGACTATCTTTGCCACCGGAGATTGAACAGT 3991 37 100.0 34 ..................................... GCTCGCCGTGACGGCGAAGACCATATCCTCCAAA 4062 37 100.0 37 ..................................... TACGCCGGCTGGATGCGAGGGGGCGATCGGCGATCGC 4136 37 100.0 45 ..................................... GANNNNNNNNNNTCCCCTTGGATGCACAGAGGTTCCCAGAATACT 4218 37 100.0 34 ..................................... GGATCTGAGTAAGATCCTTAAGGAATTTTTTGGG 4289 37 100.0 33 ..................................... GAGAACCGAGGAAGCACCGACCGAACTGCGCCG 4359 37 100.0 35 ..................................... GACACCGGATCCCTGCAATCGACCATCCGTATCGA 4431 37 100.0 33 ..................................... ACAATCCCCTACGAAGTAGAGGCATGGCTTGAA 4501 37 100.0 14 ..................................... NNNNNNNNNNATAC Deletion [4552] 4552 37 100.0 33 ..................................... CCTCAATACGTAGACCTAGTCGCTGAGACAGGG 4622 37 100.0 33 ..................................... CCCATCCTTGGGGATCTTCGAGATTATCGCACT 4692 37 100.0 34 ..................................... CGACGGAGCCACCCTGACTATCAGCCCGAACCTC 4763 37 100.0 41 ..................................... CCACCGACAGTTACTAGCTCATCGATCACCAGCAGGCATCC 4841 37 100.0 35 ..................................... CGCTCTGGGCAAGAATATCGAGTAGCGATGAATCG 4913 37 100.0 42 ..................................... NNNNNNNNNNTGCCAAGAAGCAATACTATCGGTCTGTAAAGA 4992 37 100.0 35 ..................................... CTTTACGTAAGCAGTAGTGGTCTATATCTACAGCA 5064 37 100.0 35 ..................................... TAATTCTTGTTGTTCAAGAAATAATCCTAAACTGC 5136 37 97.3 37 ..............T...................... TCGGCTCGCTCGAACCGAAGAGTGAATTCCTGCTCCC 5210 37 97.3 34 ..............T...................... AGCAGGCATCCGGATTGGGTCGCAAGTTCTTGGC 5281 37 91.9 38 ..............T....................NN NNNNNNNNTCAAGATTGCTACGCCGTCGGTGCGCAGAA 5356 37 97.3 40 ..............T...................... AGTGAAAATAACAGCTATATTGTGGACACCCAAAATTCAC 5433 37 91.9 45 ..............T....................NN NNNNNNNNGTGCTGGCGATCGCAAATCTCGAAAGGATGGTCGTGG 5515 37 97.3 36 ..............T...................... CCCACGACGCGCCCCATTACCGCGAAAGTCAGGCTA 5588 37 97.3 35 ..............T...................... GCGAGATCCACGCCTCTGGCCTTCTTCCTGCCAGA 5660 37 97.3 42 ..............T...................... NNNNNNNNNNCGGGATCACTCCACTACCAAACCGAATTAGGT 5739 37 97.3 35 ..............T...................... GATGCCCAATACAAATCCAATTTCGAGAAGATCAG 5811 37 94.6 41 ..............T.....................N NNNNNNNNNATCGGGCAGTCCGCTGTGGCGATCGCATTAAG 5889 37 94.6 41 ..............T.....................N NNNNNNNNNGACCAAAAAAAATGAAGAACCACCCATCAACC 5967 37 94.6 35 ..........C...T...................... TGCCAATATCTGCTGCCCATCGTAGCTAGCCCACA 6039 37 94.6 33 ..........C...T...................... CACCTCACCAGCCTCTAACTGCTCTGGTGTGTT 6109 37 94.6 34 ..........C...T...................... TGATGCAGGGAAGTTCGTAGCCCATCGACTCAGG 6180 37 91.9 44 ..........C...T.....................N NNNNNNNNNGTCAAAGTGATTCCCATCTGCCGGGCACGACTGTT 6261 37 94.6 34 ..........C...T...................... GCCTCAGCCGCCAAATGACTCGCCCATCGCGCGG 6332 37 94.6 34 ..........C...T...................... GTACTCGCTCATTATTATGGAGGGGTTGTCCGTG 6403 37 94.6 33 ..........C...T...................... GCTGGCTGGACTCGGAGAAGTGCTGCTTGTATT 6473 37 94.6 36 ..........C...T...................... CGATGTGGGCGGAGATGCACACACCGGTGCGATTGG 6546 37 94.6 41 ..........C...T...................... GTGGTAATTCGGATGATCTCGAACCTGGCAAAACGGGAATC 6624 37 94.6 34 ..........C...T...................... TCTGAAGGAGGTGTACGGGGAATGACTGGAACTA 6695 37 94.6 33 ..........C...T...................... CTTTTAGGAAGTTCTTGGCTTCCTCGAATGATT 6765 37 94.6 40 ..........C...T...................... CGCTGGGACTCCGACAGGCACTCCGTCCACCCCAAGGGAA 6842 37 94.6 30 ..........C...T...................... GGGGACTCGACGCAGTAGTGCTTTCCACCT 6909 37 94.6 30 ..........C...T...................... GATAGCACTTCTCCGAGTCCAGCCAGCGGC 6976 37 94.6 47 ..........C...T...................... TNNNNNNNNNNGAACCCAATCATTGTTTGGGTACACGACCCCGTCTA 7060 37 97.3 33 ..............T...................... TTTGGCGATATCAATATTCTTTTCGCCAGTCAG 7130 37 91.9 39 ..............T....................NN NNNNNNNNGCTGTTCAAGGAGTATCTCCATCTCCTCTAG 7206 37 94.6 33 ..........C...T...................... CCCGCCCAGCCAGAGCCAGTAGTAGGCGATCGC 7276 37 81.1 79 ..........C...T.................NNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGGAGATACCGCCAGATCTCCCCGA 7392 37 97.3 37 ..............T...................... TAATAAAGATTGCACCTGAGGGGGCACGGGCGATCGC 7466 37 81.1 36 ..............T................NNNNNN NNNNAGGCTGCACAGATTTCGACCTATATATATAGG 7539 37 100.0 38 ..................................... ACTCGCTCAGTCTAGCACAGAAAAATGGCTTCGCTGTA 7614 37 100.0 35 ..................................... CTGGTGGGCGGTAGGCGGTAGAGCGATCGCCTATT 7686 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================== ================== 67 37 96.7 37 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : ACTTAAATAAATCCCTATTAGGGATTGAAACCCAAATCGGAGCTTGGCTTGGGCGGTTACTAGGTTCTAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACNNNNNNNNNNACCCCGGACTCGGCACCGATAATGCTGATGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGCGCTTTCTAGGAGACAAGCCATGAACCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCTGCCGGGAGAGCTGGATCGAGAAGCTAGCTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGTAAAAAGATGTCGGCTATCAACTGGACTAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGATCGCGCTATCTGAGCGATCGCCAT # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTTTTTAATCGCAGGTTGTTGTGTTGCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGGCGACAGTTACTTGATCTCCTCGTGCGTAAGTCAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTNNNNNNNNNNAGATGACCAGGAGACCTTTCCCCTCCCTAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAAAGTCCCCGCGGCGCGGACGATGGTGATCCCGGCATGTTGCAACTTCAATTAATCCCTATTAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 5 7971-8733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7971 37 94.6 35 ..........A...A...................... GGCGACAGTTACTTGATCTCCTCGTGCGTAAGTCA 8043 37 94.6 41 ..........A...A...................... TNNNNNNNNNNAGATGACCAGGAGACCTTTCCCCTCCCTAA 8121 37 100.0 37 ..................................... AAAGTCCCCGCGGCGCGGACGATGGTGATCCCGGCAT 8195 37 100.0 37 ..................................... CGCAGCACGGCAGTAGCCGATGGGGTCGAGCATGAAG 8269 37 100.0 32 ..................................... GAAGAGACACGGTTAGGCGTACCCGTAGACAC 8338 37 100.0 36 ..................................... GGGGTGATCAAGAGGTAGCGAATGTTCGCAGCACGG 8411 37 100.0 38 ..................................... ATTCAAAAAGAAGGACATCAAATTGTTTATGCGTACGC 8486 37 100.0 33 ..................................... GACCATCCGCCCAATCTTTCTTCTTTGTTCCCA 8556 37 100.0 34 ..................................... TTCCGACAAGACCAAAAGTCCTTTCCCCTCTCTA 8627 37 100.0 33 ..................................... CACGGTTGGTTGGCGACTGACCGCCCCAGAGAC 8697 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 98.5 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AACTTAAATTAATCCCTATTAGGGATNNNNNNNNNNAGGCTGCACAGATTTCGACCTATATATATAGGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACACTCGCTCAGTCTAGCACAGAAAAATGGCTTCGCTGTAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTGGTGGGCGGTAGGCGGTAGAGCGATCGCCTATTGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTTTTTAATCGCAGGTTGTTGTGTTGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTCTCCGACGCGATTGGATCGAAAAGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTCGCGACGACGGCATGGCAACGTTCACCGTCGCCGAGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCGCTTTTCTTTTTGCTAGTAAGCGCGATCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCGAGCAGGCACTCAAGCAAAGCGGCTTAGGCGCGATCGCGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTAGCGATCGCTGCACACTTTTTCCTATATATAGTTGCAACTTCAATTAATCCCTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 6 8905-9392 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 8905 35 100.0 43 ................................... ACGCTCGCGACGACGGCATGGCAACGTTCACCGTCGCCGAGGA 8983 35 100.0 35 ................................... ACTCCGCTTTTCTTTTTGCTAGTAAGCGCGATCGC 9053 35 100.0 45 ................................... ACTCCGAGCAGGCACTCAAGCAAAGCGGCTTAGGCGCGATCGCGA 9133 35 100.0 42 ................................... NNNNNNNNNNTAGCGATCGCTGCACACTTTTTCCTATATATA 9210 35 97.1 40 ..................................N NNNNNNNNNAACGCCAGATTACCCGCCCATCGCGCGGGTT 9285 35 100.0 38 ................................... ACTCCGCTAAGGCAGAACCCCACCACGTCCCCCACCTT 9358 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 7 35 99.6 41 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Left flank : GCACGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTCAAAAAGAAGGACATCAAATTGTTTATGCGTACGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACCATCCGCCCAATCTTTCTTCTTTGTTCCCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCCGACAAGACCAAAAGTCCTTTCCCCTCTCTAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACGGTTGGTTGGCGACTGACCGCCCCAGAGACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTCTCCGACGCGATTGGATCGAAAAGC # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCGATCGCGAACAAAAGAAAAAGCCGGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACCTGTGGGAGAAACTCCAGCCACAACTCCCCGACTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTTATGAGTGTCATGTTGTTAATTTTTGTAATGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGTGGCACCAGCGCGAATGAATGAGCAACTCGGTTGCAACTTCAATTAATCCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 7 9646-10345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000121.1 Fischerella thermalis WC344 NODE_869_length_10613_cov_29.387732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 9646 36 100.0 38 .................................... CACCTGTGGGAGAAACTCCAGCCACAACTCCCCGACTT 9720 36 100.0 36 .................................... CGTTATGAGTGTCATGTTGTTAATTTTTGTAATGAA 9792 36 100.0 41 .................................... NNNNNNNNNNGTGGCACCAGCGCGAATGAATGAGCAACTCG 9869 36 100.0 35 .................................... CTGCTCTTCATCAAAGCACTTATGGCTATTCGGGA 9940 36 100.0 36 .................................... CACTCTCCCGGAGCTTGTCCCGGACTGCGTCAAAAA 10012 36 100.0 34 .................................... CTTCCTACACTCCAGTCCACGGAACCGGGCGCGA 10082 36 100.0 35 .................................... CGAAAAGTGCCGTGAACTTTATCGAAGAAGTAGAT 10153 36 100.0 42 .................................... CCGGGTAGAAAAGCCGTGGTCACGAGATACCTCGTGGCACAC 10231 36 100.0 43 .................................... NNNNNNNNNNTCGCCAATACTGATAGCCCCGGCACTCCCCGAT 10310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Left flank : TTAATCCCTATTAGGGATTGAANNNNNNNNNNTAGCGATCGCTGCACACTTTTTCCTATATATAGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNAACGCCAGATTACCCGCCCATCGCGCGGGTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCGCTAAGGCAGAACCCCACCACGTCCCCCACCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCGATCGCGAACAAAAGAAAAAGCCGGCT # Right flank : NNNNNNNNNNCCGGGTGGTGGACAACCCGGATTGTATCATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAGCAAGCCCGTAGGCTTCCGCCAAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGAGCCTCATCGATGATGTAGCTCGATCGAACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 86421-86082 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 86420 37 100.0 35 ..................................... ATGGAGGCGGGAGAGTTCAATTCTGGCACTCAATT 86348 37 100.0 38 ..................................... GACCTCTGCGTACCGAGAAACTCTCTCGGCGATCGCTG 86273 37 100.0 45 ..................................... TCTAAGATGATGGGACTACCTCCAGTGACTGCTANNNNNNNNNNA 86191 37 100.0 36 ..................................... AGCGGCACTGCTGCGATATCTGCCGCCGGAATAATT 86118 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================= ================== 5 37 99.5 39 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCAATTAATCCCTATTAGGGATTGAAACGGAGAAGTCGCTACGAGATAGCGCCATTACGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGACTCTCTTTTTTTGTGCCACGAANNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGATTCGATAAATCCAGCGATCGCTCTCCTTCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATGCCGCTTTCGGGGAGCACGCTGTGCTCCNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGTAGCTTCTCAGGGAACCAGGACAACTCTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAAGCTCATCCAAGCCCCCAGCCTTTCAGATACGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATAGTGCTTAATCCTGCGAATCACTCTCCAAANNNNNNNNNNTC # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 89261-86465 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 89260 37 97.3 34 ..............T...................... CAGTGAGATAGGGGTGGGAAGATTATTCAGTATA 89189 37 97.3 42 ..............T...................... CACTCTGTGATGGCAAAGGCAACAGGGATCTCTNNNNNNNNN 89110 37 94.6 34 N.............T...................... GATTGTTAGCAAAAAGCCGTGGAGTTCGCTCCAC 89039 37 97.3 36 ..............T...................... TATTTGATTGCACATTCCCCCAACCAAACTAGTCTC 88966 37 97.3 43 ..............T...................... GCTGTGCTGCCAATAATTCCTGCTAGTTGCACAGNNNNNNNNN 88886 37 94.6 34 N.............T...................... ATCTAAACCTCTCTCAACAGATCTTCCAAATCAT 88815 37 97.3 35 ..............T...................... ATATTCAATCTGCAATCATGATTTTGAGATAAGAG 88743 37 97.3 35 ..............T...................... GAGGAGAAATGTTACCCACCGGATGTGTATCTACC 88671 37 97.3 40 ..............T...................... AATACGAACATATTCCATGTTCGGCGANNNNNNNNNNAGT 88594 37 97.3 41 ..............T...................... TGTCTAAGGCGTTTGGCGGCTTTTTTACTTATCTGGCTAAT 88516 37 97.3 33 ..............T...................... GAGGAAGCTCGCCAGAGTATCCTCCCAGCCAAA 88446 37 97.3 44 ..............T...................... GGGTGACAGATATGTTCAGGTCAGCGTACGCCCCCGTAGTCTGG 88365 37 97.3 47 ..............T...................... CATGTCATTGACTATATCGACTCGACCCCTGTCGANNNNNNNNNNTT 88281 37 100.0 46 ..................................... ATCCAGGTGCGGCTCTTCCCCTTACACGCCAAGGGNNNNNNNNNNA 88198 37 100.0 42 ..................................... TCTGGACTTTATGTACCTCCAGGTCTTCGGNNNNNNNNNNTT 88119 37 100.0 46 ..................................... CGTAGGGCTGGTAGCGACAGCAATGTGATCGCTCCNNNNNNNNNNG 88036 37 100.0 34 ..................................... CATTGCCGTACCCCGCCCCTTCTATATCAATGCT 87965 37 100.0 38 ..................................... TCGATTATAACGATCGCTGCCTACAACAATNNNNNNNN 87890 37 94.6 37 NN................................... TCGATGGGACTGTAGATGTCCAGTGTGGTGGTGCCGT 87816 37 100.0 34 ..................................... TATATATAGGAAAATCTGTGCAGTTTTCTCTGGC 87745 37 100.0 41 ..................................... ACTTTGTCTCCTTGCGCGTAATTCATATCTCTNNNNNNNNN 87667 37 97.3 40 N.................................... GAATGCCTCGAATTCCTCCCTGTGCTGGGTGGCAAGAGAT 87590 37 100.0 36 ..................................... ATGGCTATTTGGTGATCGCTGGTGGCGATCGCATAT 87517 37 100.0 35 ..................................... CGATGCCGCCAAGGTGGGGAATGAAGTGGATGCGA 87445 37 100.0 35 ..................................... CGGTGGGCAACCCCCTTGCAAGCAGAATCCCACCA 87373 37 100.0 36 ..................................... GCTGATTTGGCTAGCCGGCGAACCCGAACCCGCAAC 87300 37 100.0 34 ..................................... AGCGCGCGATCGTCGACATCAATATTAATTGAAA 87229 37 100.0 40 ..................................... GAATATGCCACCCCAGTTTCTCATCGTAATGNNNNNNNNN 87152 37 97.3 38 N.................................... TCCGCGCCCCGCGATCGCTGTGCGAACTCCAAAGCGAT 87077 37 100.0 40 ..................................... CTGGAAGTGGTCGACGATCATGTAGCGGCGNNNNNNNNNN 87000 37 94.6 34 ..........C...T...................... GGAATATTCATTGCGTATCTTCTCGATCATGGCA 86929 37 94.6 31 ..........C...T...................... GGAGAAGTCGCTACGAGATAGCGCCATTACG 86861 37 94.6 34 ..........C...T...................... GGCGACTCTCTTTTTTTGTGCCACGAANNNNNNN 86790 37 86.5 34 NNN.......C...T...................... GAGATTCGATAAATCCAGCGATCGCTCTCCTTCG 86719 37 94.6 39 ..........C...T...................... ATGCCGCTTTCGGGGAGCACGCTGTGCTCCNNNNNNNNN 86643 37 94.6 34 N.............T...................... CCCGTAGCTTCTCAGGGAACCAGGACAACTCTGG 86572 37 97.3 34 ..............T...................... GAAGCTCATCCAAGCCCCCAGCCTTTCAGATACG 86501 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== =============================================== ================== 38 37 97.4 38 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : AAATCTTTTTCTTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCCTCGACCAGCCTGAATAGTCCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCTGCTCTCTCTTCTTTGGCTGCATCGGCGATCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGAATACTGCACAGATTTCTCCATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : ATAGTGCTTAATCCTGCGAATCACTCTCCAAANNNNNNNNNNTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATGGAGGCGGGAGAGTTCAATTCTGGCACTCAATTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACCTCTGCGTACCGAGAAACTCTCTCGGCGATCGCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTAAGATGATGGGACTACCTCCAGTGACTGCTANNNNNNNNNNAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGCGGCACTGCTGCGATATCTGCCGCCGGAATAATTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAATCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 90803-89710 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 90802 36 94.4 38 NN.................................. GGCTGGCGATCGCTGATGGACGGAGAGCGATCGCTGAG 90728 36 100.0 34 .................................... TTATTGTGACGCTGACTGCCCAATCGGCACAGCG 90658 36 100.0 45 .................................... CGGCTCGGAGGTACTCGATAATAAGCCGGATCGCCNNNNNNNNNN 90577 36 100.0 47 .................................... ATTATCAACAAAGCTGCAAATATACTAAGTATTCCGCNNNNNNNNNN 90494 36 97.2 40 .............A...................... TAAATCCCCATCTCCTATGGTGGCTACACCNNNNNNNNNN 90418 36 100.0 35 .................................... GAAGATGTTCTTTCTGTCATCACAGTCATGTCAGG 90347 36 100.0 42 .................................... GCTAAGGCAGACGAGGCAGACCGAGAGGACTANNNNNNNNNN 90269 36 100.0 37 .................................... TTCGTCTTGAATCCTGGGAACGCCTTTGAGGCAGAGG 90196 36 100.0 34 .................................... ATGCTTACTGGCGCGTACGGGTGGGAGAAGAAAG 90126 36 100.0 44 .................................... CATCCCCTTCACCGCACCAAGGATCACAGTGCTTNNNNNNNNNN 90046 36 100.0 35 .................................... GAATAGCGCACAGCGATCGCTCGAATCCAGTAGTG 89975 36 100.0 47 .................................... CCTCAGAGGGGAAATCACCGAATGGGGCGCAGGTGTANNNNNNNNNN 89892 36 100.0 38 .................................... CTGCCGACCGATAGAGTAACTTGCCAGCCACTATCTCG 89818 36 100.0 37 .................................... CTTCTCTAGGTACCTGAGATAGAAATCTTTTTCTTCG 89745 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 15 36 99.4 40 TTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGCCTTTTCCTCTTGAGTACCACCCGNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCTCAGTGACTCCATGTATTCCTGGACATAGTCTGGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCACGCCTTTCCCTAGCGAGGGATCCCATTCNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATCAGGCAGCTATTTTCTTTCGCAGCTTGCGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGATCCCCCGAAGTCGGCGATCGCACCCCCGCCCAGTCCGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCCCATCTACCCAACAGTCTATATCATTCCACNNNNNNNNNNTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCCAAGCCCAATCTGCGGCTCTCTTCCCAGCGGGCATCGNNNNNNNN # Right flank : TCCTCGACCAGCCTGAATAGTCCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCTGCTCTCTCTTCTTTGGCTGCATCGGCGATCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGAATACTGCACAGATTTCTCCATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGTGAGATAGGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 4 93419-91155 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 93418 37 97.3 36 ..............A...................... TGTGCAATAGCCATGAGCGCTAAAGGATGGCTAATG 93345 37 97.3 32 ..............A...................... GCTTATCGGACTGACGAGACCCAAAGTACAAG 93276 37 97.3 39 ..............A...................... GAAAGAAGCCATATTTTTCTCCTAGGTGAGTGNNNNNNN 93200 37 91.9 35 NNN.................................. GGAGCTAAAAACCACAGCATCGGCATTGATTTAGG 93128 37 100.0 44 ..................................... GAATTCTGTGCAGCCCATCATCATCAGTTGAATCNNNNNNNNNN 93047 37 97.3 43 ..............A...................... AAACCATCCTCTGGGGTGTCTTGGGCATCCTCTGNNNNNNNNN 92967 37 97.3 35 N.................................... TGGGTGGCGATCGCCGCCTACCCCGACTCTCCTTT 92895 37 100.0 36 ..................................... TGGATCCACGATAGGAATGAGGAGAACGCGCTACGA 92822 37 100.0 32 ..................................... TGGGCTGGCTCGCCTCCAGAGCCGCCGACTTG 92753 37 100.0 34 ..................................... AGCTGACCTAGGGTGCTTGCTTGGATCAAAGCGA 92682 37 100.0 35 ..................................... CACCCCAAGGGAAATCCCATGAGGAGTTCCATCGC 92610 37 100.0 38 ..................................... GCTGCCATTGCCGGATGGTGCTTGCTGCTCGGATGGCT 92535 37 100.0 34 ..................................... AGCCAGGTTCCGGACTTCGTCGGTGTGGCAATGA 92464 37 100.0 43 ..................................... CGGGTCGCTAAGGGGAGGCGTGTCCGGAAGTTNNNNNNNNNNG 92384 37 100.0 42 ..................................... ATCATCGGAGACTACCTTTGCCCTGAATCCGGNNNNNNNNNN 92305 37 100.0 35 ..................................... GAGCAGGCGCTCGGCATGGAGTCGCCCCTCGGCGA 92233 37 100.0 33 ..................................... TTGCCCCTCCCTCCCCTACACTCCTGCTCGATG 92163 37 100.0 35 ..................................... CGAGGGTGCGATCGCCGCGATCTCCCAGTCTCTTG 92091 37 100.0 42 ..................................... GGCTTCTTGGGCTTGGTCTCGGTGTGCACCGGCTTCGGGAGG 92012 37 100.0 37 ..................................... GGCTGGGCGGTGCAAGTATCCCGCCGGCNNNNNNNNN 91938 37 94.6 33 N.............A...................... ACCAGACCAGACCATCACCACCTCACCATACTG 91868 37 97.3 42 ..............A...................... GTAGGGCAGGGAGCAGACCGCAGGTATTATGTNNNNNNNNNN 91789 37 75.7 35 ....A..TCA.CTAA.........C............ CTGCTGGGATTGTCCCAGATCTTCGCCCAAGCTTT 91717 37 75.7 40 ....A..TCA.CTAA.........C............ GATATCCTGCTCGACAGGGTACGATTCGACNNNNNNNNNN 91640 37 75.7 34 ....A..TCA.CTAA.........C............ TCACTCGTTCCGGGAACCGAGGGCAAGATGTACC 91569 37 75.7 34 ....A..TCA.CTAA.........C............ GCTCTCCGACTATTCCGCCGATCAGCTTTGCGCT 91498 37 75.7 41 ....A..TCA.CTAA.........C............ TTTTTGACCTTTACCTTTCGGAGAAAAACCATNNNNNNNNN 91420 37 94.6 35 N.............A...................... CACAAACTTGGCTGGTATGAGAACCCTGATGTAGC 91348 37 97.3 45 ..............A...................... CCGGCTTCCTGCCTTTTCCTCTTGAGTACCACCCGNNNNNNNNNN 91266 37 100.0 38 ..................................... TCTCAGTGACTCCATGTATTCCTGGACATAGTCTGGGA 91191 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 31 37 94.9 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTATTAGGGATTGAAACACTATCGCCGGATGGTGCCTGCTGCTCGGTCGGCACCAGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACAAGTGCGATCGACCAGACCGAGGGCTTTGCTGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTTCTTTGGGCTGAGGAGCGATCGCGCTTTTCTCGTGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACAATCCGCCGCAGAGTCCCATCCCCTTCGAGGACTTNNNNNNNNNNATGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACACGCTTGGAAATCAAGCCGGCAACGACTATTGCCAGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTCCGACAACTCTTGTGGGTCTCCGACACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCG # Right flank : CACGCCTTTCCCTAGCGAGGGATCCCATTCNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATCAGGCAGCTATTTTCTTTCGCAGCTTGCGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGATCCCCCGAAGTCGGCGATCGCACCCCCGCCCAGTCCGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCCCATCTACCCAACAGTCTATATCATTCCACNNNNNNNNNNTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCCAAGCCCAATCTGCGGCTCTCTTCCCAGCGGGCATCGNNNNNNNNNNGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCTGGCGATCGCTGATGGACGGAGAGCGATCGCTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTATTGTGACGCTGACTGCCCAATCGGCACAGCGTTGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 5 93938-93525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 93937 37 100.0 39 ..................................... ACTATCGCCGGATGGTGCCTGCTGCTCGGTCGGCACCAG 93861 37 100.0 32 ..................................... AAGTGCGATCGACCAGACCGAGGGCTTTGCTG 93792 37 100.0 37 ..................................... CTTCTTTGGGCTGAGGAGCGATCGCGCTTTTCTCGTG 93718 37 100.0 47 ..................................... AATCCGCCGCAGAGTCCCATCCCCTTCGAGGACTTNNNNNNNNNNAT 93634 37 100.0 36 ..................................... ACGCTTGGAAATCAAGCCGGCAACGACTATTGCCAG 93561 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 6 37 100.0 38 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : TCCCTATTAGGGATTGAAACCCAGAAGCGCGATCGCTGATACAATAATGTCGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTCGTCGAAGACTGTCTTCGCCTTGAACCCCGGAAAAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCACATTACATCTCTAATCTAGCACCCATACACGANNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTGTCCACAGGATGCTTCCCCGACAGTATCGGGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGCCAGCGGCTCCGGATCGCTTCACACCGGAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTTTCGTGCTGCCCCCTATCTCGCCTTTGATTCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGCTATCTGCTGCTCTTGCTCCAAGATANNNNNNNNNNTT # Right flank : TCCGACAACTCTTGTGGGTCTCCGACACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTGTGCAATAGCCATGAGCGCTAAAGGATGGCTAATGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGCTTATCGGACTGACGAGACCCAAAGTACAAGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGAAAGAAGCCATATTTTTCTCCTAGGTGAGTGNNNNNNNNNNGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGCTAAAAACCACAGCATCGGCATTGATTTAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAATTCTGTGCAGCCCATCATCATCAGTTGAATCNNNNNNNNNNGTTGCAACTTAAATAAATCCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 6 97119-95601 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000125.1 Fischerella thermalis WC344 NODE_1154_length_166259_cov_40.399345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 97118 37 78.4 35 ....A..TCA.CTA..........C............ CATCTGGGTATGGATGTTGTTCAGGAGCGTCTTGG 97046 37 78.4 36 ....A..TCA.CTA..........C............ GGGATTGGGCTGCGGCGAGATCCGCTTCGAGATCGG 96973 37 78.4 34 ....A..TCA.CTA..........C............ TCCAGAAATTCATCCTGGAATGCGACCGTTTTGC 96902 37 78.4 33 ....A..TCA.CTA..........C............ ATAAAGATACCCTTTAAACAATCTTTATATTTC 96832 37 78.4 33 ....A..TCA.CTA..........C............ ACACAAGCAGCGATTCAAACGATCTAGATCAAT 96762 37 78.4 34 ....A..TCA.CTA..........C............ AAAACATTTTTTGGCATAGGGACACCAAACTTAA 96691 37 78.4 36 ....A..TCA.CTA..........C............ TCGCTGATATTACGCGATGTGCGAGAAGCGATCGCT 96618 37 78.4 33 ....A..TCA.CTA..........C............ TCCTAGGATAGAACTATAAACTATGAACTATTA 96548 37 78.4 41 ....A..TCA.CTA..........C............ ATTGCGTACTGCAAAGACCAGCCATACAAGAANNNNNNNNN 96470 37 97.3 34 N.................................... GGAGGCATTCGCGGACAGGTACTTCACGAGGGAG 96399 37 100.0 38 ..................................... TAAAAGAAAGGAGCGATCGCACCGAGTGCGATCGCTCT 96324 37 100.0 42 ..................................... GGAGAGCCACAGAATCCCGCCATCATCGCCGANNNNNNNNNN 96245 37 100.0 32 ..................................... TTCTCTGCCCGGAGGATAGCGATCGCTCCTGC 96176 37 100.0 38 ..................................... GCCTGGATAGTCTGTAGGGGTCTAAGTANNNNNNNNNN 96101 37 100.0 35 ..................................... CGGGTGCATTCGATAGTTCCGAGTCCTGGATCCTG 96029 37 100.0 42 ..................................... TTAGAAATCAATCCCCGTACCACTGCACTGTTTTTGGNNNNN 95950 37 73.0 43 NNNNNNNNNN........................... GGGGCGCGATCGCATCGTTCGTGGCGCAGCGATTCGCGTATGA 95870 37 100.0 36 ..................................... GATCGGCAATCCGTAGAAGCTCCGGCAGTAGGCGGA 95797 37 100.0 42 ..................................... GTGCTGGTCTGGAGACTATAGCCGAAGATCTGATCTGGGGCG 95718 37 100.0 44 ..................................... ATCGGCAGATCCCTTCCCCCTGCCAATGACCCCTCCCGTGGAGA 95637 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 21 37 89.3 37 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : GGAGACGGAGTCCGGGTTCGAGACCCACACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTTCGATCTCTACGTACTCGAAGGATGGCGTGANNNNNNNNNNCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTATCATCTCGATGGGGAGTAACAAGTCCCATGTTGTTCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGTGGA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 1-410 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1 37 100.0 38 ..................................... GCGAATTGGGCTTAGAAGAAAAAGACCTCTATCTCAGG 76 37 100.0 36 ..................................... GGAACTGATCGACGCGATCGCCCCTTCAAACCCAGC 149 37 100.0 37 ..................................... TCCGGTGCTGTATATGTGGTAAGTAACCACACAGCAG 223 37 100.0 37 ..................................... TGATGGCGGGCTTATTCTCCCAAGCAAGCGCGATCGT 297 37 100.0 40 ..................................... TCTGCGCCCACCTAGGCAAAACAAAAAGCCGGCTACAAAA 374 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 100.0 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CATGCGAAGGACTTCGCACCTCTGCTGAAGTCATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACGACCAGCTTGCCATCTGCTTCTGGCGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGGTACTTGGCGACATCCCCGTTCTTGCCCGCCCATGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGTGAAGCCGGTGCTGGGGAACGCCGTCGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 1097-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1097 36 100.0 35 .................................... CCGGCAAGCGCCAACTGTGACTTGCTCCCAAGTGA 1168 36 100.0 39 .................................... NNNNNNNNNNGATGTATTTCGCCAGCCATAAAATTGCTG 1243 36 100.0 37 .................................... CCAGACGCTCGCCTTTCGCTGGGAGAATTTTTAAAAA 1316 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACGACCAGCTTGCCATCTGCTTCTGGCGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGGTACTTGGCGACATCCCCGTTCTTGCCCGCCCATGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGTGAAGCCGGTGCTGGGGAACGCCGTCGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGATGATAGCCTCGGCACACTCCCTATGGTCTTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGAATCGAATCGAGATACAGCTGCTGGAGCTGG # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAACCCATTCATGTCACCGGTGACGCCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCATCAATTTTCACTTCCTTCGCTCGCCCATTCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCGTGAAGGCGTAGGTGCCATGGATGTCGATTCAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTATCCTAGAATTCGCACAACAAACTTTAGAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNAGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 3 1542-2054 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================= ================== 1542 36 100.0 45 .................................... CNNNNNNNNNNCATCAATTTTCACTTCCTTCGCTCGCCCATTCTT 1623 36 100.0 37 .................................... CTCGTGAAGGCGTAGGTGCCATGGATGTCGATTCAAC 1696 36 100.0 34 .................................... CCTATCCTAGAATTCGCACAACAAACTTTAGAAA 1766 36 97.2 40 ...................................N NNNNNNNNNAGTTTACTTGCCACCGCAGTTACGTTTTTTT 1842 36 88.9 65 .........................G.C.T.....T TTGGTCATGAATTATGTGTGCATACNNNNNNNNNNCCAGCAGAACTATCCAGAACAATCAGCCCA GC [1873] 1945 36 100.0 38 .................................... CGACCTCCGCGGCATCGATCGGGATCTGCGATCGCTTA 2019 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================= ================== 7 36 98.0 43 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNNGCGGCGAATCGAATCGAGATACAGCTGCTGGAGCTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGCAAGCGCCAACTGTGACTTGCTCCCAAGTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGATGTATTTCGCCAGCCATAAAATTGCTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGACGCTCGCCTTTCGCTGGGAGAATTTTTAAAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAACCCATTCATGTCACCGGTGACGCCTT # Right flank : ANNNNNNNNNNNNNNNNNNNNGTCGTTCGTAGCGCAACGCTTTGCCTACGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGNNNNNNNNNNGGGTGCGATCGCCAGAGATTCCAGCAATCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTCGCGCCTAGCCCGGACTCATTGATTCCGATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNTCCCTTGCCCCGTAACCAGTCTAGCCTCAGCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTNNNNNNNNNNCCCTATACCGTCCTATACTTCTCAGTAAGCCATATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNGTGCATGGGAATGAGTTGCAGATAAGGTCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNATATATGGGCATCGTTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 2182-2605 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2182 37 100.0 34 ..................................... GCTCGCGCCTAGCCCGGACTCATTGATTCCGATT 2253 37 94.6 40 ...................................NN NNNNNNNNTCCCTTGCCCCGTAACCAGTCTAGCCTCAGCA 2330 37 100.0 46 ..................................... TNNNNNNNNNNCCCTATACCGTCCTATACTTCTCAGTAAGCCATAT 2413 37 100.0 40 ..................................... NNNNNNNNNNGTGCATGGGAATGAGTTGCAGATAAGGTCA 2490 37 100.0 42 ..................................... NNNNNNNNNNATATATGGGCATCGTTGAACCTCTGGATGGCG 2569 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 99.1 41 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GATGTCGATTCAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTATCCTAGAATTCGCACAACAAACTTTAGAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNAGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACTTAAATTAATCCCTATTGGCGTTGCTGAATTTGGTCATGAATTATGTGTGCATACNNNNNNNNNNCCAGCAGAACTATCCAGAACAATCAGCCCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACCTCCGCGGCATCGATCGGGATCTGCGATCGCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNGTCGTTCGTAGCGCAACGCTTTGCCTACGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGNNNNNNNNNNGGGTGCGATCGCCAGAGATTCCAGCAATCT # Right flank : CAGACCAGTACAGCTAGGATGGGGTGGCTTCGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCCGGACGAGTTGCCCGGAGCCATCGAACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCAAACACTGAATCTGCTCCACTGCCACCGATTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGCAATCATCACTCTGCTTTAAAAGAAAGATGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATAATCGTCATCATTCGCTTTAAAGCAACTAGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTGCCGCCGGTATCGAGTATGCGTTGGGCACGCGCTTTTTGTGTTGAAATCAACTAAAATCCCTATCAGGGATTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 5 2780-3185 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2780 37 100.0 35 ..................................... TCAAACACTGAATCTGCTCCACTGCCACCGATTGA 2852 37 100.0 33 ..................................... TGCAATCATCACTCTGCTTTAAAAGAAAGATGC 2922 37 100.0 34 ..................................... CATAATCGTCATCATTCGCTTTAAAGCAACTAGG 2993 37 100.0 42 ..................................... TTGCCGCCGGTATCGAGTATGCGTTGGGCACGCGCTTTTTGT 3072 37 97.3 40 ....................................N NNNNNNNNNCCCCAATGGTGGCTAGCTGCCACCCTTCGTT 3149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 99.5 37 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGATTGAANNNNNNNNNNTCCCTTGCCCCGTAACCAGTCTAGCCTCAGCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTNNNNNNNNNNCCCTATACCGTCCTATACTTCTCAGTAAGCCATATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNGTGCATGGGAATGAGTTGCAGATAAGGTCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNATATATGGGCATCGTTGAACCTCTGGATGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGACCAGTACAGCTAGGATGGGGTGGCTTCGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCCGGACGAGTTGCCCGGAGCCATCGAAC # Right flank : CCATNNNNNNNNNNGTATTTACCGCACATGTCTTTCTTCAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNACTCTAGCAAATACAGCGATCGCTGCCAAATTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGTATTCAGCTTTTTTATTCATTTCTCATTCATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCCATTGTATCGGGGTGGGGCGCGATCGCTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCGACCCGGGCTGCACCAAGCATCCCGACGCGCCCAACCCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGAGGTGAGTCGGAGCCTGTCTCGGGACAGGTTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATTGCCGGAGCAAGATGGGCAACTCATTGCTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 6 3228-3489 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3228 36 100.0 44 .................................... CNNNNNNNNNNACTCTAGCAAATACAGCGATCGCTGCCAAATTG 3308 36 100.0 34 .................................... CAGTATTCAGCTTTTTTATTCATTTCTCATTCAT 3378 36 100.0 40 .................................... NNNNNNNNNNCCATTGTATCGGGGTGGGGCGCGATCGCTG 3454 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 40 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNACTGCCGGACGAGTTGCCCGGAGCCATCGAACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCAAACACTGAATCTGCTCCACTGCCACCGATTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGCAATCATCACTCTGCTTTAAAAGAAAGATGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATAATCGTCATCATTCGCTTTAAAGCAACTAGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTGCCGCCGGTATCGAGTATGCGTTGGGCACGCGCTTTTTGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNCCCCAATGGTGGCTAGCTGCCACCCTTCGTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATNNNNNNNNNNGTATTTACCGCACATGTCTTTCTTCAGGA # Right flank : ANNNNNNNNNNCGACCCGGGCTGCACCAAGCATCCCGACGCGCCCAACCCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGAGGTGAGTCGGAGCCTGTCTCGGGACAGGTTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATTGCCGGAGCAAGATGGGCAACTCATTGCTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTACGCTTATGGGAGAGAGCGATTTTACTACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTGTGCAGCCCGCGATCGCCCCACATCTGAGCAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAACTGGCTCTGTACCTTCTCATCTACCCTGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAAGCTTATCTGCCACTGTACCACCTAGGCAGCCGTTGAAATCAACTAAAATCCCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 7 3541-4003 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3541 37 100.0 36 ..................................... GGGAGGTGAGTCGGAGCCTGTCTCGGGACAGGTTGC 3614 37 100.0 33 ..................................... CATTGCCGGAGCAAGATGGGCAACTCATTGCTC 3684 37 100.0 34 ..................................... CTCTACGCTTATGGGAGAGAGCGATTTTACTACT 3755 37 100.0 35 ..................................... CTGTGCAGCCCGCGATCGCCCCACATCTGAGCAGC 3827 37 100.0 33 ..................................... CAACTGGCTCTGTACCTTCTCATCTACCCTGAA 3897 37 100.0 33 ..................................... AAGCTTATCTGCCACTGTACCACCTAGGCAGCC 3967 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 34 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ATCGAGTATGCGTTGGGCACGCGCTTTTTGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNCCCCAATGGTGGCTAGCTGCCACCCTTCGTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATNNNNNNNNNNGTATTTACCGCACATGTCTTTCTTCAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNACTCTAGCAAATACAGCGATCGCTGCCAAATTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGTATTCAGCTTTTTTATTCATTTCTCATTCATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCCATTGTATCGGGGTGGGGCGCGATCGCTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCGACCCGGGCTGCACCAAGCATCCCGACGCGCCCAACCCAA # Right flank : CCTGAGCATCCACGGCATATCTCACTCAGTATGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGATGGGGGGTAGAGGCGGCTTGTAGGCGATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGTAATCGACCGGCTTCGCGCCCAAGATAAGATGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCCTGGATCGGGAGCCAGCTGCGCTCGATAGAAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 8 4314-5005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4314 37 100.0 37 ..................................... GGCGTAATCGACCGGCTTCGCGCCCAAGATAAGATGA 4388 37 100.0 34 ..................................... TCCTGGATCGGGAGCCAGCTGCGCTCGATAGAAG 4459 37 100.0 40 ..................................... NNNNNNNNNNGTGCTAACCCTGGTTTTCTTGGTCTTGCCC 4536 37 100.0 35 ..................................... TTAAAAAAATAGTTGCTAAGCCACCAAAAACGATC 4608 37 100.0 35 ..................................... GAGGCACAGATCCTTGCCTCCCTGATCGATCAAGA 4680 37 100.0 35 ..................................... ATAAGCCATTTCTACAAGCTCATCCTCATTCTGCG 4752 37 100.0 37 ..................................... TGACTTATTCCAACAGGGATAAACTCGCCCTCAAATC 4826 37 100.0 34 ..................................... TGTGCGACCTTCTACGCTTATGGGGGAGAGCGAT 4897 37 100.0 35 ..................................... GATTGCCACTCCCGCGGGAATCTCCGCGATGGGCT 4969 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ACATCTGAGCAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAACTGGCTCTGTACCTTCTCATCTACCCTGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAAGCTTATCTGCCACTGTACCACCTAGGCAGCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTGAGCATCCACGGCATATCTCACTCAGTATGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGATGGGGGGTAGAGGCGGCTTGTAGGCGATT # Right flank : CCAGATTCCTCTGGTCGGAGAATACTGCACAGAACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCAAACCAGAGGCGTTCTACCTTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGCGACACGAGAAGAGAAACCTGTATATTTCTTCTCCGTTGAAATCAACTAAAATCCCTATCAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 9 5878-6825 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000124.1 Fischerella thermalis WC344 NODE_982_length_6785_cov_27.058512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5878 37 100.0 35 ..................................... CTCCTAAAGCCTTCCCAAGCTCCTTTGCTATCTCT 5950 37 100.0 37 ..................................... GCGAGTCGGCGACTCTGGAGGCGAGCCAGCCCGAATG 6024 37 100.0 44 ..................................... GNNNNNNNNNNATCGAGATACGATAGATATATCACTCACACCAG 6105 37 100.0 36 ..................................... AAGTGCCACTCTCTTTGAAGTGCCATCCTGTAGGAG 6178 37 100.0 36 ..................................... GCGGAATGACTACCGAGGCGTTCCGGAGCTATCTCG 6251 37 100.0 41 ..................................... NNNNNNNNNNCTCATGCCCGATTGTCCCGTCGGGGTAATGA 6329 37 97.3 43 ....................................N NNNNNNNNNACCCCCAGCCTCGCCACGAAGCCGACATAGCTGC 6409 37 100.0 41 ..................................... NNNNNNNNNNCATCTACAACCCGGCACAGATCGAGAAAATC 6487 37 94.6 39 ...................................NN NNNNNNNNTTACGCTTCCGTCTGTTCAGTACCCATCGTA 6563 37 100.0 33 ..................................... GATAGCAAGCAGATGGGTCATAGAGCGTACCAT 6633 37 100.0 45 ..................................... ATTNNNNNNNNNNTCTTTTTTGACAACTTTAATTTTGCCAAGAGC 6715 37 100.0 37 ..................................... ATTGCTGGGTGTTTAGGATCTTCTTTTCTTGGCAACA 6789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 13 37 99.4 39 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAACCAGAGGCGTTCTACCTTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGCGACACGAGAAGAGAAACCTGTATATTTCTTCTCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTCCTCACGATTCTCTGAGCGCATCCGAG # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 136555-136745 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 136555 37 100.0 43 ..................................... ATTTTTTCTTTCAAAGGTTCCTGCCCTCTGGGCACGAACCGAA 136635 37 100.0 37 ..................................... TTTCCTGATCAGGTTTCCTTGGGGGCGGTATTTCCTC 136709 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 40 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : CTTTNNNNNNNNNNCACTTATTTGTGCCTCCCCATCGTGATAGCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAATGCCTGGCATCGGGTGAAGCGATTCTGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCTTTATAACCTCGCTTGTACAAGGCGTTGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCGCTGAAACCATTTGATCCCTTCTCGCCATAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTAGGTCTCCTAGCCACTCTCCAGACGTGAGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGATCCTGCCTAGCAGGTTGTCCGGAGAGTAGCTCCCCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTNNNNNNNNNNTCTGTGTTCCCTGAGATGAAAGCGTAGATAGTATTAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 136790-136970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 136790 36 100.0 33 .................................... CCAATGCCTGGCATCGGGTGAAGCGATTCTGCT 136859 36 100.0 40 .................................... NNNNNNNNNNCTTTATAACCTCGCTTGTACAAGGCGTTGT 136935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Left flank : TTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATTTTTTCTTTCAAAGGTTCCTGCCCTCTGGGCACGAACCGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCCTGATCAGGTTTCCTTGGGGGCGGTATTTCCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTNNNNNNNNNNCACTTATTTGTGCCTCCCCATCGTGATAGCG # Right flank : ACNNNNNNNNNNCGCTGAAACCATTTGATCCCTTCTCGCCATAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTAGGTCTCCTAGCCACTCTCCAGACGTGAGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGATCCTGCCTAGCAGGTTGTCCGGAGAGTAGCTCCCCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTNNNNNNNNNNTCTGTGTTCCCTGAGATGAAAGCGTAGATAGTATTAAATTTTGTAAATAAAAATTACGAGAAAGTCAGCTTTTTCGGAGATTTGAGCCAATTTAGTTAGTTTTTTGTATAAGTATTATTGCTAATTTGAAAAAATTTTCGCAAAACTTGGGTCAATCATAGTGGCTGCAAAGATTGTGGATATTAATACGCTGTATATTAGTTTCTGATGACTGCTGTGTGCTGATGAAGCGAATAGCTATCAGCGAAAGGATCAACAACATA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 137015-137201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 137015 37 100.0 35 ..................................... CTTAGGTCTCCTAGCCACTCTCCAGACGTGAGGTA 137087 37 100.0 41 ..................................... AAGATCCTGCCTAGCAGGTTGTCCGGAGAGTAGCTCCCCGA 137165 37 86.5 0 ................................NNNNN | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 95.5 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATTTTTTCTTTCAAAGGTTCCTGCCCTCTGGGCACGAACCGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCCTGATCAGGTTTCCTTGGGGGCGGTATTTCCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTNNNNNNNNNNCACTTATTTGTGCCTCCCCATCGTGATAGCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAATGCCTGGCATCGGGTGAAGCGATTCTGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCTTTATAACCTCGCTTGTACAAGGCGTTGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCGCTGAAACCATTTGATCCCTTCTCGCCATAAG # Right flank : NNNNNNTCTGTGTTCCCTGAGATGAAAGCGTAGATAGTATTAAATTTTGTAAATAAAAATTACGAGAAAGTCAGCTTTTTCGGAGATTTGAGCCAATTTAGTTAGTTTTTTGTATAAGTATTATTGCTAATTTGAAAAAATTTTCGCAAAACTTGGGTCAATCATAGTGGCTGCAAAGATTGTGGATATTAATACGCTGTATATTAGTTTCTGATGACTGCTGTGTGCTGATGAAGCGAATAGCTATCAGCGAAAGGATCAACAACATAATCAGTAAATGCCTTGTGGGTGGTTTTTGTAGGGTTTAGCCCTCATCCATCCCTGAGAGTAGGATAAAGTCAAGGCAAACACAAACCTACAAGCCCTTGGGCTAACTTGGTGAACTTTGTTGCAAAACTTTTCCTACCCAATAGGTATTTACAGCCTTGAACTAAGCGCCACTAGCTGAAAACTTTTTATTTTGGTTTGATGGAAAGAGGTGGAAAAATCGTGAAAAAATT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 4 140063-140241 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 140063 37 100.0 35 ..................................... GATGCTGATGAATATGTAGAATGGTTTAAAGATTT 140135 37 100.0 33 ..................................... GAACTCCCAAGCCGCGATCGCACCATTGGCACC 140205 37 97.3 0 ....................................N | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 99.1 34 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCA # Right flank : NNNNNNNNNNAAGCAGAATGTCTGGATCGCTGGGATACCTATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTCGAGTAGCGATTGAGGTTCGGGTCGGCGATCGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCTGGGCGTAGGAATCTGCACAGATTTTCCATATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTGACAACTCTTTTAAAAAGCCGGAAACCCTTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNCACGTGCCGCTCGGATGGCTGCGATCGCCGCTCGGATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACTATCTTAAGCTACAAGGCAATACAGTAGAGTTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTATATAACACTTCAGCAGACCGGACTATCAGACGTTGCAA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 140283-140539 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 140283 37 100.0 37 ..................................... GTCGAGTAGCGATTGAGGTTCGGGTCGGCGATCGCGA 140357 37 100.0 37 ..................................... TTCTCTGGGCGTAGGAATCTGCACAGATTTTCCATAT 140431 37 100.0 35 ..................................... TTTGACAACTCTTTTAAAAAGCCGGAAACCCTTGC 140503 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATGCTGATGAATATGTAGAATGGTTTAAAGATTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACTCCCAAGCCGCGATCGCACCATTGGCACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAAGCAGAATGTCTGGATCGCTGGGATACCTAT # Right flank : CGNNNNNNNNNNCACGTGCCGCTCGGATGGCTGCGATCGCCGCTCGGATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACTATCTTAAGCTACAAGGCAATACAGTAGAGTTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTATATAACACTTCAGCAGACCGGACTATCAGACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNACTTGCGCTCCTTGCGACTCCATATGCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCTCAAGCCGTAGGGGATACTAAGGAGTACCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGTACGACCGACCTGACCCAGAAGAACCCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGGTGCCAAAGACTTGGGGCAGAAATGGGCTAGGGTTGCAACTTAAATTAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 6 140589-140770 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 140589 37 100.0 37 ..................................... GAACTATCTTAAGCTACAAGGCAATACAGTAGAGTTT 140663 37 100.0 34 ..................................... CTATATAACACTTCAGCAGACCGGACTATCAGAC 140734 37 97.3 0 ....................................N | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : GGGATTGAAACGATGCTGATGAATATGTAGAATGGTTTAAAGATTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACTCCCAAGCCGCGATCGCACCATTGGCACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAAGCAGAATGTCTGGATCGCTGGGATACCTATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTCGAGTAGCGATTGAGGTTCGGGTCGGCGATCGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCTGGGCGTAGGAATCTGCACAGATTTTCCATATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTGACAACTCTTTTAAAAAGCCGGAAACCCTTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNCACGTGCCGCTCGGATGGCTGCGATCGCCGCTCGGATG # Right flank : NNNNNNNNNNACTTGCGCTCCTTGCGACTCCATATGCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCTCAAGCCGTAGGGGATACTAAGGAGTACCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGTACGACCGACCTGACCCAGAAGAACCCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGGTGCCAAAGACTTGGGGCAGAAATGGGCTAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTTCTAGATGTTCTACCGCGTCGGCAACGACGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTGCAGCGATCGCATGGCACTGGACGAAAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNACCGATGCTATCTGCGATCGCTGTGCATCGTTGCAACTTCAATTAATC # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 7 140808-141205 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 140808 37 100.0 34 ..................................... CTCTCAAGCCGTAGGGGATACTAAGGAGTACCAA 140879 37 100.0 33 ..................................... TAGTACGACCGACCTGACCCAGAAGAACCCATT 140949 37 100.0 35 ..................................... GGGGTGCCAAAGACTTGGGGCAGAAATGGGCTAGG 141021 37 97.3 42 ....................................N NNNNNNNNNTTCTAGATGTTCTACCGCGTCGGCAACGACGCG 141100 37 100.0 32 ..................................... CTTGCAGCGATCGCATGGCACTGGACGAAAGA 141169 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 99.5 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AGGGATTGAAACGTCGAGTAGCGATTGAGGTTCGGGTCGGCGATCGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCTGGGCGTAGGAATCTGCACAGATTTTCCATATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTGACAACTCTTTTAAAAAGCCGGAAACCCTTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNCACGTGCCGCTCGGATGGCTGCGATCGCCGCTCGGATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACTATCTTAAGCTACAAGGCAATACAGTAGAGTTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTATATAACACTTCAGCAGACCGGACTATCAGACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNACTTGCGCTCCTTGCGACTCCATATGCT # Right flank : CNNNNNNNNNNNNNNNNACCGATGCTATCTGCGATCGCTGTGCATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTTGCTGGATCGAGGTGGGGCTTGAGGAGAGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACATTCCACACCGACTACCTCGCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCGGCGGAGCCTTTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 8 141871-142340 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 141871 37 100.0 34 ..................................... AGAGCAGGAACTATCGCAGGTACCTCTGGCTTCT 141942 37 100.0 34 ..................................... GCATTCCGCATCCGGTGGATGAGCAATCGGAGGG 142013 37 100.0 35 ..................................... GAGTTGCTGGCTGGAACTCGGAGAAGTGCTATCGA 142085 37 100.0 33 ..................................... GAATCCGAATCGGAGGTATTCGATAATAAGCCG 142155 37 97.3 42 ....................................N NNNNNNNNNCCTTTGCCTAGCGAGGAATCCCATTCGTGAGAC 142234 37 100.0 33 ..................................... GACTTCGATATCTGCGGCATCGAAAAGAATGCA 142304 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 99.6 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACATTCCACACCGACTACCTCGCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCGGCGGAGCCTTTGCCCTTGCCGACGACCCCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTCCGGCACTCAAGCCCGCGGAAGCGGACGCGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNATATTTATCTCTCGTCCCTTTAAAAGTTTTGATA # Right flank : CGTTGAGCAATTCAATAAATTCTTTGGCAATCCCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNGAAGTAGAACTGGTAGACTGCGGATAGACCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTACTGATGGCTGATAGTGGCTGCTTGACCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTCCATCTCGGAGAAGCTGTCGCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTGGGAAGACATTAGCAAATACTAGCGCATTTGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCGAAAGTTTCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 9 142718-143048 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 142718 37 100.0 35 ..................................... GTGGGAAGACATTAGCAAATACTAGCGCATTTGCT 142790 37 100.0 37 ..................................... CGCGAAAGTTTCAACCACACCCTTCAACCCAAAATTT 142864 37 100.0 36 ..................................... CTTTCACCGAGATCGATTACATCTACATCTGAGAAA 142937 37 100.0 38 ..................................... GCTCCTTGGTGGGGTGTGGAGCGGGTACGCCATCGTGA 143012 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATCCCATTCGTGAGACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACTTCGATATCTGCGGCATCGAAAAGAATGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTTGAGCAATTCAATAAATTCTTTGGCAATCCCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNGAAGTAGAACTGGTAGACTGCGGATAGACCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTACTGATGGCTGATAGTGGCTGCTTGACCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTCCATCTCGGAGAAGCTGTCGCTT # Right flank : CCATGAGTAGCAGGATTGGGTACTCTGCTCCCTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTTATCTTTTTTCATGATGGTTGCTCCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGTCGGCGCGATCGCTCCCCTCCACGGTATCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGAGGTGCCAGTTGGTGGAACCCAGCCACGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTAGCTGATTAGGGTGCTCATCGAGCACCAGAACAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGGCGGAAGTTCCCCAGCTGCGCTGCCAGCTTCGGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCGCAAGAAATGGAAGGATTTGTGGATGCCCAAGTTGCAACTTCAATTAATCCCTATT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 10 143306-143707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 143306 37 100.0 35 ..................................... CTAGCTGATTAGGGTGCTCATCGAGCACCAGAACA 143378 37 100.0 38 ..................................... GAGGCGGAAGTTCCCCAGCTGCGCTGCCAGCTTCGGGG 143453 37 100.0 33 ..................................... TCGCAAGAAATGGAAGGATTTGTGGATGCCCAA 143523 37 100.0 34 ..................................... TTTTCCCGCTTCTGGATAGCTTGAATTGTTGCCG 143594 37 97.3 40 ....................................N NNNNNNNNNATCGATCAGCATCGGCTGCCATATCCAGCGA 143671 37 97.3 0 ..........A.......................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.1 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATCCCTATTAGGGATTGAAACCGCGAAAGTTTCAACCACACCCTTCAACCCAAAATTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTTTCACCGAGATCGATTACATCTACATCTGAGAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTCCTTGGTGGGGTGTGGAGCGGGTACGCCATCGTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCATGAGTAGCAGGATTGGGTACTCTGCTCCCTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTTATCTTTTTTCATGATGGTTGCTCCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGTCGGCGCGATCGCTCCCCTCCACGGTATCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGAGGTGCCAGTTGGTGGAACCCAGCCACGG # Right flank : CTACATGTTTCTTCTCTTTTGATGATAAAATCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGCGATCGCTGCCATCGGACTGCGATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCAACTCCCTGACGAGAAGTTGGGGCGCGATCGCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTAGTCCAGGAGTGGAAGACCTGGTATCTCCCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNCATTCGCCGAGTTTCCGACGGACTTCTCACGTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTCGCCCCAGAGAACCAGCCAGCGATCGCTATCGTTGCAACTTAAATTAATCCCTATTAGGGATTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 11 143874-144055 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 143874 38 100.0 36 ...................................... ATCAACTCCCTGACGAGAAGTTGGGGCGCGATCGCA 143948 38 100.0 32 ...................................... TAGTCCAGGAGTGGAAGACCTGGTATCTCCCT 144018 38 92.1 0 ...................................NNN | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 97.4 34 TGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AACAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGGCGGAAGTTCCCCAGCTGCGCTGCCAGCTTCGGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCGCAAGAAATGGAAGGATTTGTGGATGCCCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTTCCCGCTTCTGGATAGCTTGAATTGTTGCCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNATCGATCAGCATCGGCTGCCATATCCAGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTACATGTTTCTTCTCTTTTGATGATAAAATCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGCGATCGCTGCCATCGGACTGCGA # Right flank : NNNNNNNNCATTCGCCGAGTTTCCGACGGACTTCTCACGTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTCGCCCCAGAGAACCAGCCAGCGATCGCTATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCGGGCTTATGGTCAGGGTGGCTCCATCGCTCCCTGTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGCTCGATGCATCTGCGATCGCTGATTAGGTTTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGACAACTGGCGAGCCAGCCTGCCCTACCCCTATCCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCCTCGGCATCACGGTCATACCTGAGTTTCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNCGCCTCCCGACTCGCTATGCGAATGCAAGGGAGTTGCAACTTC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 12 144097-144503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 144097 37 94.6 40 ...................................NN NNNNNNNNTCGCCCCAGAGAACCAGCCAGCGATCGCTATC 144174 37 100.0 39 ..................................... CCGGGCTTATGGTCAGGGTGGCTCCATCGCTCCCTGTGA 144250 37 100.0 36 ..................................... CTGCTCGATGCATCTGCGATCGCTGATTAGGTTTGG 144323 37 100.0 37 ..................................... CGACAACTGGCGAGCCAGCCTGCCCTACCCCTATCCC 144397 37 100.0 33 ..................................... ATCCTCGGCATCACGGTCATACCTGAGTTTCAC 144467 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.2 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNATCGATCAGCATCGGCTGCCATATCCAGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTACATGTTTCTTCTCTTTTGATGATAAAATCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGCGATCGCTGCCATCGGACTGCGATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCAACTCCCTGACGAGAAGTTGGGGCGCGATCGCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTAGTCCAGGAGTGGAAGACCTGGTATCTCCCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNCATTCGCCGAGTTTCCGACGGACTTCTCACGTGG # Right flank : NNNNNNNNNCGCCTCCCGACTCGCTATGCGAATGCAAGGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTTGCTCATCATCATGAAAAAGCAAAAGAGTACCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGGTATAAAACCCTTAGACTCAGACAAGTATCAGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNAAACTCCAAACCGGGCAACGGGGAGACAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTTTCTTTTTCTTTGACAACTTTGACAACTTTAACGTTGCAACTTCAATTAATCTCTATTAGGGATTGAAACCCATGACTTTAAAAAATTCGGGGCAAAAGCCCAATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCTTAATTGCTTCTTCTCTTCTTTTGTCTTTTGCGTTGCAACTTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAANN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 13 144775-145549 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 144775 37 100.0 36 ..................................... ATTTTCTTTTTCTTTGACAACTTTGACAACTTTAAC 144848 37 97.3 35 ...................T................. CCATGACTTTAAAAAATTCGGGGCAAAAGCCCAAT 144920 37 100.0 34 ..................................... CCTTAATTGCTTCTTCTCTTCTTTTGTCTTTTGC 144991 37 97.3 44 ....................................N NNNNNNNNNGCCGCCACCACGCCTTCGAGCAGAGATAGCCAATT 145072 37 100.0 33 ..................................... GCTGAATCTGCCTCCGTACTGCGTGCCCACACC 145142 37 97.3 42 ....................................N NNNNNNNNNAATGAAGAAAACGCCATTCTGCTTGCAATGTCG 145221 37 100.0 38 ..................................... TGTCAAGCGATCGCCAAGAAAAGGCGACTCCGGTGTGA 145296 37 97.3 39 ....................................N NNNNNNNNNAAAGTTTGGGTCTGAGCTTGCAACAATTGC 145372 37 100.0 34 ..................................... AATGAATTTATTCGCCACTTCAAAGAAGAAAAAA 145443 37 100.0 33 ..................................... GAGATTATTTTCACGACATTTTTTGGTTTTCAA 145513 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 99.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AGGGATTGAAACCTGCTCGATGCATCTGCGATCGCTGATTAGGTTTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGACAACTGGCGAGCCAGCCTGCCCTACCCCTATCCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCCTCGGCATCACGGTCATACCTGAGTTTCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNCGCCTCCCGACTCGCTATGCGAATGCAAGGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTTGCTCATCATCATGAAAAAGCAAAAGAGTACCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGGTATAAAACCCTTAGACTCAGACAAGTATCAGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNAAACTCCAAACCGGGCAACGGGGAGACAAAA # Right flank : CCGAACGAGATGCCATATATTTTCTGGCTAACTCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTGGACAACAGGAAACATATATGGTGTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNAAAAGTGAGACAGTCCATGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGGATGTCTGGGTCGCTTGGATACCTATAGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTAATGGTTAGTCGGTGTCGCATAGGCATAAAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTTGTTTTTGCGATTGCGTGAAAGTGTTCCACTCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 14 145837-146235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 145837 37 100.0 32 ..................................... GAGGATGTCTGGGTCGCTTGGATACCTATAGT 145906 37 100.0 34 ..................................... TAATGGTTAGTCGGTGTCGCATAGGCATAAAAAA 145977 37 100.0 40 ..................................... CTTGTTTTTGCGATTGCGTGAAAGTGTTCCACTCGGCGAT 146054 37 100.0 34 ..................................... AGCCCACAGAACATCATTGAACCCATCGCTGTTC 146125 37 100.0 37 ..................................... AACTGGCGATCGCGGGCTGCACACTTTTTCCTATATA 146199 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNAAAGTTTGGGTCTGAGCTTGCAACAATTGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATGAATTTATTCGCCACTTCAAAGAAGAAAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGATTATTTTCACGACATTTTTTGGTTTTCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGAACGAGATGCCATATATTTTCTGGCTAACTCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTGGACAACAGGAAACATATATGGTGTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNAAAAGTGAGACAGTCCATGA # Right flank : CGAGGATCAATGGAGCATGAAGGAGAAATCCAGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTTTTAATTCTCCTTCTGATTGTCCTACGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 15 146765-146950 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 146765 37 100.0 33 ..................................... GGTTTTGGAATTTTTACTCCACTCCCAGACCAC 146835 37 100.0 42 ..................................... NNNNNNNNNNCAGCTGCTTCAATCGCTTTGGCACGCTTGATT 146914 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 98.2 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTTTTAATTCTCCTTCTGATTGTCCTACGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAAGGATCGAGAATTTGTCCAAGATTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGGATTTAGCTCTTGACGATTTTTCCAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCGACCCCTTTACCTAGCGAGGGATCCCATTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATACTTTTTTCGCTACGTTGGCGATCGCAGTCGCCCAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTGCTTCTGGGCGATGGGGTCGAGCGATCGCCCGTTGCAACTTCAATTAATCCCTATTAGGGATT # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 16 147638-148118 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 147638 37 100.0 39 ..................................... TCTGGTCGCCCAGAGCAGATGATGAGTTCAGCAGAAGCA 147714 37 100.0 35 ..................................... TTCCCTGAAGCCAATGAATTCGGGTACAAAAATTA 147786 37 97.3 40 ....................................N NNNNNNNNNATCTGGTTTGAGCTTGGGCAACCACTCGATC 147863 37 100.0 34 ..................................... CTAAATACCCATGATGCGGTCTATGTACTGGGTA 147934 37 100.0 43 ..................................... ANNNNNNNNNNATCCGGGCTTGCAAGCCCGGAGTATATCTCTG 148014 37 100.0 31 ..................................... TCAAGGATATATCTTACTTGACCTTTGTAGC 148082 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 99.6 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGGATTTAGCTCTTGACGATTTTTCCAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCGACCCCTTTACCTAGCGAGGGATCCCATTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATACTTTTTTCGCTACGTTGGCGATCGCAGTCGCCCAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTGCTTCTGGGCGATGGGGTCGAGCGATCGCCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCGGAGCGTGCCGGAGGCATTCGCTGCCGACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGGCAAAGGCAAAAAGAGTCTCGGCAGTGATAGGCATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNAGCCGGGATGGGATCGTTGCCACCTTC # Right flank : CCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGCGATCGCTGCCCGGTTGTACGCCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCCTGAGGCTCTAGCCAGTAAGTAGTGTGGGTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACTTCATTGGCGTTGGTGCGTCCTGCTCCGATCACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNN # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 17 148430-148609 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 148430 37 100.0 34 ..................................... TCCCTGAGGCTCTAGCCAGTAAGTAGTGTGGGTC 148501 37 100.0 35 ..................................... ACTTCATTGGCGTTGGTGCGTCCTGCTCCGATCAC 148573 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : GGTAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACANNNNNNNNNNATCCGGGCTTGCAAGCCCGGAGTATATCTCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCAAGGATATATCTTACTTGACCTTTGTAGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGCGATCGCTGCCCGGTTGTACGCCGG # Right flank : CNNNNNNNNNNCTCATATCGAGCATGGGACGCTCGCCTATCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTATCGCATCTCAATGTCCCGAAGGAATTCAGGGTTGCAACCGTCGTCGGGGGCTGGGACGACCTCGCGGTGGGGACTATTAGGGATTGAAACGTATCGCATCTCAATGTCCCGAAGGAATTCAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGAGGAGGCACCACCAGACCAGTACGCCATTTTGGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCTGGTACACCCTAGTGATCCTAGCTTGGCTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGAGCTGGGCGCTCTCGATAATCAGCATCGCCAAGTTGCAACTTAAATTAATCCCTATTAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACGCGATCGCGCAC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 18 148652-149466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000123.1 Fischerella thermalis WC344 NODE_962_length_149428_cov_40.916782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================== ================== 148652 37 100.0 126 ..................................... GTATCGCATCTCAATGTCCCGAAGGAATTCAGGGTTGCAACCGTCGTCGGGGGCTGGGACGACCTCGCGGTGGGGACTATTAGGGATTGAAACGTATCGCATCTCAATGTCCCGAAGGAATTCAGG 148815 37 100.0 36 ..................................... AGAGGAGGCACCACCAGACCAGTACGCCATTTTGGC 148888 37 100.0 32 ..................................... CCTGGTACACCCTAGTGATCCTAGCTTGGCTA 148957 37 100.0 35 ..................................... GAGAGCTGGGCGCTCTCGATAATCAGCATCGCCAA 149029 28 75.7 0 ............................--------- - Deletion [149057] 149057 37 100.0 41 ..................................... GACGCGATCGCGCACCCGATCACGAATACTCTAATCATTGG 149135 37 97.3 35 ..........................A.......... CTTGCTTCATCGCCTACTGCTTCCTGTGTGGGGAC 149207 37 100.0 34 ..................................... GCTGAACGACAGCCCGACCTGGCTTTATCTCGGC 149278 37 97.3 41 ....................................N NNNNNNNNNTGCCGCGATCGCCTCAAAGCTTCAAATTCTTG 149356 37 97.3 37 ..........C.......................... GTATTCAGTGCCCTCTCGATGTGCCTGAACTAACACG 149430 37 97.3 0 ..........C.......................... | ========== ====== ====== ====== ===================================== ============================================================================================================================== ================== 11 37 96.8 42 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGCGATCGCTGCCCGGTTGTACGCCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCCTGAGGCTCTAGCCAGTAAGTAGTGTGGGTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACTTCATTGGCGTTGGTGCGTCCTGCTCCGATCACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCTCATATCGAGCATGGGACGCTCGCCTATCTC # Right flank : TT # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-1.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-577 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000105.1 Fischerella thermalis WC344 NODE_300_length_169644_cov_42.878605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 1 37 100.0 41 ..................................... CGGGTGCCCAAGCCAGAGCAAGGGCTGATGCCGATCCTTGA 79 37 100.0 34 ..................................... ATCGCTGACCACACGTGTTGACAGTTTGTGCAAG 150 37 97.3 51 ....................................N NNNNNNNNNAGATAGCTGCCGATTGCAAGGGATTGCAATCGGTGTACCGGG 238 37 97.3 43 ..............A...................... TNNNNNNNNNNAGGAGGCTTAAACCCTTACCCCACAAGGGAGA 318 37 100.0 40 ..................................... CATTTGTACTTGGAGTGCTTCCATCGAATTCGAGATGGCG 395 37 100.0 39 ..................................... CTCGCCTCCTTGTATGTGCCGAAGCACACGGGTTCTATC 471 37 100.0 33 ..................................... GCATTTTTTCTTTGCCAGTATCCGACCACTTCT 541 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 8 37 99.3 40 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 953-756 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000108.1 Fischerella thermalis WC344 NODE_324_length_25893_cov_37.859924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================= ================== 952 30 100.0 65 .............................. ACATCTTCTAAGAATTCATCTTGGAAGGTGACCAATCNNNNNNNNNNAAAAGCTCTTTAGATTTT 857 30 76.7 42 ...T.CG..TCA...C.............. AGGTTGATTCCCAACTGATGGGCGCGTGCATTGACGTTGCAA 785 30 93.3 0 ...C...T...................... | ========== ====== ====== ====== ============================== ================================================================= ================== 3 30 90.0 54 CTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : AATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGTTGCAA # Right flank : GATTTTTTCGACGATGCCTTGTCCCCAGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGAGGGGACTTTCCTCCATTGGGGAGCAATATTCTCCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCGCCACAAAGGATGCGATCGCGCCCCAACTCCGAGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCTATTGACTCATTGGGACTAGTGGGACATTTGTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCCAGTGGCACAAGTACTACTACGCTTCCTCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTGCAAAAGCCATCTGCCCCGA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:-1.5, 6:0.25, 7:-1.69, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-3359 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAF01000109.1 Fischerella thermalis WC344 NODE_328_length_19472_cov_38.246510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1 37 100.0 35 ..................................... GGTGCTACCCATTATTTCCTGGTACAGCTCTTCAG 73 37 100.0 41 ..................................... TGTGCCTCACCTCCGACAGACTGGGAAATGTCTCCCGCCTA 151 37 100.0 36 ..................................... GATCGCACCCAAAAGAAAAGCCGGCTACGAGAGCCG 224 37 100.0 33 ..................................... TCTATTTGCTCTAGGTGGCGCTGGGTTTCTGGA 294 37 91.9 41 ..................................NNN NNNNNNNCTGTCCTTACAGTCACAGGCAAAGACTATCTGGA 372 37 100.0 36 ..................................... GGTGTCCCACTGCCACTATCAGAAGCTAGATATTTG 445 37 100.0 46 ..................................... NNNNNNNNNNTAATCCTCCCTCACGATCGCCGCGATCGCCTTTCTT 528 37 100.0 37 ..................................... CTGAGGGAGAGGAATTGGTGGATACATATTGCTAGGT 602 37 100.0 31 ..................................... AGCCAGTCGACCGTAGGGTTGTCCTGGTAGC 670 37 100.0 34 ..................................... CGGAGCGACTTGCCCAAAAGAGTATCGGAGTAGA 741 37 97.3 46 ....................................N NNNNNNNNNTCCTCTGCCTTTGGCGATCTGATCACATGCACCGGAG 824 37 100.0 34 ..................................... TAAGACCCCGACAGCGATCGCTCTGTTTTTTAGA 895 37 100.0 37 ..................................... GCGGCGAGGTACAACCCCGATTTAGAGCAGATAGAGG 969 37 100.0 46 ..................................... CGACCGGCTGCGAGCGATCGCCGCCATTGCCGGATGGGTGCTGTTC 1052 37 100.0 39 ..................................... TGTGGCTTGGGCTGCATCGACTGGGGGGCCGTACCCCAC 1128 37 100.0 35 ..................................... TTTGGCGATGTCGATGTTCTTCTCCCCGGTCAGGG 1200 37 100.0 33 ..................................... ATTTCTTGTCACATTTTTCGGTTTTCCAGGGAA 1270 37 100.0 37 ..................................... CCCGGAGCCTACCAGACACTCTTGCTCCATCTTTTGC 1344 37 91.9 43 ..................................NNN NNNNNNNTCCACTAGCCTAGCGCAAGCGATCGCTGGCGGGCAG 1424 37 100.0 31 ..................................... TTCCCTGATCCGACGCTCACTCATCCGAAAA 1492 37 100.0 35 ..................................... GCGTGCGCGTCGCGACCACCATGGAGTCGCTTCAC 1564 37 100.0 34 ..................................... CCTTCGATGACAAAGTACTCGACTGGTCTTACCA 1635 37 97.3 40 ....................................N NNNNNNNNNGTGTGATGATGGCAGAGGCAATCACCCTTGC 1712 37 97.3 40 ....................................N NNNNNNNNNAATCCACGCCGCCGCAGCTTCTGCTGAAGAT 1789 37 100.0 32 ..................................... CTTGCTGATGTGAAGATAGCTATCTCCGAGAC 1858 37 100.0 42 ..................................... GANNNNNNNNNNGCAGTATCCCCGAAATCGTTCAAGTATTTA 1937 37 100.0 35 ..................................... CACCAAGAGCGCGAGACTCTGCTAGAAACAGAAGC 2009 37 100.0 38 ..................................... GGACCCATATCGCGATAGACGCAAAAGGTTTCGTACGC 2084 37 100.0 35 ..................................... AGGAATTCGGGATATCTTAGAAGTGAATTACCCCA 2156 37 100.0 41 ..................................... ATNNNNNNNNNNTCCTGAACCTCTATCAGAATGGAATATCC 2234 37 100.0 34 ..................................... ATACTTGCCCCTTTACCGTCTAAACCGTCCCAAC 2305 37 100.0 35 ..................................... GGGCTTACGGGAATAGTAGCGGCAACAGCAATAGT 2377 37 100.0 34 ..................................... CCGGTTTACTAACCGGGACATTGCGGTTTACTAA 2448 37 100.0 33 ..................................... CATAGTCTTCGATGTCGAAAGAGAGTCCAACCA 2518 37 100.0 36 ..................................... GGTCTTGCCTGCGACTGGGAGGATCGGGAACTCTGG 2591 37 97.3 34 ....................................G CCAACTGAGGGGAAAATGGACACCAAAATCGATA 2662 37 97.3 33 ....................................G ACTCAGATTAGCCGCGCTCACGGGTACTGTGAC 2732 37 100.0 34 ..................................... AGGGCAATTAAAAATGATTTGCCTGCAACCCGTG 2803 37 100.0 41 ..................................... TTTNNNNNNNNNNATTCGGCTGAATTCTCGCTGATTGGTGA 2881 37 100.0 34 ..................................... TCTGTCCTGACTCGGCAATCACAATCGTAAATGG 2952 37 100.0 36 ..................................... GGTGCATGGGAAAGAGCACAAGATGACATCGTATTT 3025 37 100.0 38 ..................................... TGGTGACATCCCATTTAATCCGCCAAGTTTATCCTGAG 3100 37 100.0 33 ..................................... ATGGGGGCGATCGCATGGCTTTTATCAGTCGCC 3170 37 100.0 39 ..................................... NNNNNNNNNNAAATTCAGCAGCATGTTGAGGTCGCCAAA 3246 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 3323 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================================== ================== 46 37 99.3 37 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : | # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //