Array 1 249788-253532 **** Predicted by CRISPRDetect 2.4 *** >NZ_NICU01000004.1 Klebsiella pneumoniae strain AUH-KIMP328 NODE_4_length_438686_cov_58.1966_ID_1970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249788 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249847 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249908 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249969 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 250030 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 250091 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 250152 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 250213 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 250274 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 250335 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 250396 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250457 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250518 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250579 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250640 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250701 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250762 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250823 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250884 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250945 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 251006 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 251067 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 251128 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 251189 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 251250 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 251311 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251372 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251433 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251494 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251555 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251616 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251677 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251738 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251799 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251860 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251921 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251982 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 252043 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 252104 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 252165 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 252226 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 252287 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 252348 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 252409 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252470 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252531 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252592 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252653 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252714 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252775 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252836 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252897 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252958 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 253019 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 253080 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 253141 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 253202 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 253263 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 253324 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 253385 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 253446 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253504 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //