Array 1 384026-385373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQG010000003.1 Pseudomonas aeruginosa strain PAL1.18 NODE_3_length_796719_cov_25.2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 384026 28 100.0 32 ............................ TGCCGGGGCTTCCGAAGGGGCCTGCTGACGCG 384086 28 100.0 32 ............................ ATTGCCTGCCCCAGGCCGATAGCCTGACGGGC 384146 28 100.0 32 ............................ CGAACTCACAATCCTTGCCGCCAAACTTCAGG 384206 28 100.0 32 ............................ AGTTCGTTCTTTTCCCACTTCAGGCCGAACTC 384266 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 384326 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 384386 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 384446 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 384506 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 384566 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 384626 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 384686 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 384746 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 384806 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 384866 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 384926 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 384986 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 385046 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 385106 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 385166 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 385226 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 385286 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 385346 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32763-33510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQG010000014.1 Pseudomonas aeruginosa strain PAL1.18 NODE_14_length_106898_cov_25.2472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32763 28 100.0 32 ............................ AGGAACTTGTCATCCAGCCCGACAAAGAACGC 32823 28 100.0 32 ............................ TGTTGCCGGACGATCTCTGCCAGCCACTCCGC 32883 28 100.0 32 ............................ GTGCTGTCGGGACGGTGGACAGCGAGGGGATC 32943 28 100.0 32 ............................ AAAGCCGATACACGGGGCTCGTTCTGGCGATC 33003 28 100.0 32 ............................ ATGGCCTGCTGTCCGCTGTGCGCGATCAGCCC 33063 28 100.0 32 ............................ TGCTACGCCCTGGCCGGCTCCAGCGCTCCGAA 33123 28 100.0 32 ............................ ACCAAGATCGGCCTGCGCGAATTCCGCGTCGA 33183 28 100.0 32 ............................ AATTGTTGAGATGCCGCCGAGCGCTGATCTCT 33243 28 100.0 32 ............................ AACCCGGCGGCGACCGTTGCTGCCTGGAATTC 33303 28 100.0 32 ............................ ACGGTCAGCTTGCGTTCCACGGCCGAGGTCAA 33363 28 100.0 32 ............................ ATCGCCGCCACCACCCGTTCCAGGCGTGCCGC 33423 28 96.4 32 ...........T................ TGAAGGCAAGGGACGTATGGGATGTGCACTTC 33483 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGTAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43014-42025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQG010000014.1 Pseudomonas aeruginosa strain PAL1.18 NODE_14_length_106898_cov_25.2472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43013 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 42952 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 42892 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 42832 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 42772 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 42712 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 42652 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 42592 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 42532 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 42472 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 42412 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 42352 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 42292 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 42232 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 42172 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 42112 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 42052 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCTCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //