Array 1 428-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXV01000270.1 Flavobacterium cyanobacteriorum strain TH021 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 427 47 100.0 30 ............................................... AATGCCGGCATGACAAACAACAGGTTTGTT 350 47 100.0 29 ............................................... TGTTGATACCAAGGAAAACCGATTGAAGT 274 47 100.0 30 ............................................... CGATTACCATTACATGAACGTCTATCATCG 197 47 100.0 30 ............................................... GGGGGCTAAACCTAAATATAATGAGCCTAC 120 47 100.0 29 ............................................... AGTATCGGCAGTGGCTCTGGCAGGAAGTG 44 44 93.6 0 ............................................--- | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 98.9 30 GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Left flank : TGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGGTGTTGATACCAAGGAAAACCGATTGNGAGTATAACTTGATGTTGCGTTTCCGAAGC # Right flank : C # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 72-503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXV01000272.1 Flavobacterium cyanobacteriorum strain TH021 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 72 47 100.0 30 ............................................... CCCATCTTGAGTATCTCGATAACTGCCTCG 149 47 100.0 30 ............................................... TTTAGGGTCTTCTAACGCTTTCGTTTTATT 226 47 100.0 30 ............................................... CTCAGCTTAATATCATACAAAACGAGCTGA 303 47 100.0 30 ............................................... CAAATTCGATTGCATCAACCGATACAAGAG 380 47 100.0 30 ............................................... GGAACGCAAAAACTACAGTTAACGGTAACA 457 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Left flank : AATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGGTTGAAGAAATGGAAAAAAATCTACAAGCTTG # Right flank : CGTAAATANGCTTAATATCATACAAAACGAGCTGAGTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 578-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXV01000261.1 Flavobacterium cyanobacteriorum strain TH021 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 577 44 93.6 30 ---............................................ TCACCATCGGCTACATTCGGCATGTCTGTC 503 47 100.0 29 ............................................... ATCTCATCAACTATAGAGTGTAGATTGCA 427 47 100.0 30 ............................................... TAAAGTTTTTTAATTTCTAAAACCCCCTGT 350 47 100.0 30 ............................................... CAGATTGGTTTTGAGTGATGGCAGAACAGA 273 47 100.0 30 ............................................... AATGACCGAATGCCAGCAGTATGAACAGCG 196 47 100.0 30 ............................................... TATGCCGCAAAAACAATAGTGCTTAATGTG 119 47 100.0 29 ............................................... GGTTGTATATTTGTATCAGATAACAATTA 43 43 91.5 0 ...........................................---- | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 98.1 30 GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Left flank : | # Right flank : A # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXV01000283.1 Flavobacterium cyanobacteriorum strain TH021 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1 45 95.7 29 --............................................. AGCGACCTTGACATCGCTGAAGGGGTTTT 75 47 100.0 29 ............................................... ACAAAGAAAGGCATGGGAGATTTTAACGG 151 47 100.0 30 ............................................... GTGGGTGCGGATCCTGTGAGTTTCGGTGTG 228 47 100.0 30 ............................................... TGAAGGCTTTGCAAACACAGTTCTTGTACA 305 47 100.0 30 ............................................... TGTCATGCTGTATGAGTATGACAAGAAGAT 382 47 100.0 30 ............................................... TAAACATAAAGTAGACACCAACAGCAATAA 459 44 68.1 1 .................N....CT---..GCA..CA..G...TTG.. A T [504] Deletion [504] 505 44 93.6 0 ............................................--- | Deletion [549] ========== ====== ====== ====== =============================================== ============================== ================== 8 47 94.7 26 CCTGTGAATAATCCCTTAAAGGTACAATTTTGAAAGCAATTCACAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGTGAATAATCCCTTAAAGGTACAATTTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 11362-11083 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXV01000300.1 Flavobacterium cyanobacteriorum strain TH021 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 11361 46 85.1 30 A..A....G.C.A..-.G............................. TCAAACTGTATTTAAAATGAATTTTACGTA AA,A [11349,11353] 11282 47 100.0 30 ............................................... ATTAATATTCACAAACATTACGTCTCCTCC 11205 47 100.0 29 ............................................... TTTCTTTGTATTTTTTTGGCTCGCTGCTG 11129 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 96.3 30 GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Left flank : TTGTATATAATTTTAATTTATAAAAATGACACTTTCAGAAAATAAAAAAGGGGGTGACCAACATCAAAAAAACTAATCCGGCAGCTGAGGCTATATTCCGTCACTATGGTTCGATAATACGAAACTTACTTTACCGTTTAAGGCCGTAAAGAAGCTGAATTTATTGCCCATGTTTTTGAAAACAAGTATGCAGGAAATGATGTCTTTAAGGAGATTGAGCCTAACTTATACCAAGATATGATCAAGCTTGTGGAAGATTTAAAGGCTATAGTAAAATAATGTCTGAAACTGAAATTTCATCTAAGTTAAAATCCACAAGGCTTAACTTGGCGTTTTCTTTTCTGCCTCCTCCAGAAGTGGTAGTAAATCATCGCCTATATGATACAAAAGAGTTTGTAGCAACTGGGCATAACTGTCCTCAGGACTTTCTGAAAAGTCCCTTTTAGAAGTGTAAAAATCAAACAGTTCAATTCCTGACATAAGACAAAAGTATTAAGAAT # Right flank : CCACGGGGATGTGCAGGAAAGGGCTGTNGGAGCTTTGTGCTTTTAAATGAACTTTAGTAATAAATTGAAACTTTGTATTCCGAATTGAAATCAGCGAAGCTAAACCCGCCCGAACGCAAATCGACCGGGGCGTTAGGCGCAACCCTTAAAGAACGAGAACGTAGAAATGAAAATAATCACTTTTTTAATTTTATTGCTTTCACCGACTTTTGTTTTCTCGCAGGCAAAAATTGAGATTGACACAATTGAAGTAAATTATCGAATAAAAGATAGTATAGGCGTAACATCACAAATACCTCAAATAAAGAATGGGGTTAACGCTGTCGCTAAAGAGAAAATTAATTCAGACATAAGAAAATATTTTATGGCGGGCATTACCAAAGACAGTGCTGAATATGTAAATGAAATACTAAAACAATATGAATTAACTACCCTTGAAGAATACTTAGAACTAGAAGATGGAGAATTAATGCCAGATGATGAATCAGAAGCATTTGAGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTACCTTTAAGGGATTATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //