Array 1 339380-340999 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 339380 30 100.0 37 .............................. CTATGAACAGTATGGAACTAAATATGTGACATGGGGA 339447 30 100.0 36 .............................. TACTACACATGTAGTACATTGTCAACATTCTTTTGA 339513 30 100.0 35 .............................. GCCGCAAGCCATACGCGCCAGTACATCGACTTCGC 339578 30 100.0 36 .............................. CTCCCCTTATTGCCAGTCCGAATCAGTCGGACTGGC 339644 30 100.0 37 .............................. TTCCACCTCTAACAGCTCGGCCGGGATGATCCAAGGC 339711 30 100.0 37 .............................. AAAAATTTGCAAATCGTCCTGTAGAACATGTATTTAC 339778 30 100.0 37 .............................. TGCGCTAATCCTTTCGAAACGGTACCGGAGCAAATTC 339845 30 100.0 36 .............................. GGACAACTGTTCCTTTCTCTACTCTTTCTCTCCATC 339911 30 100.0 36 .............................. CTCTTAAAGAGTGGCGTGATGTTGACGTCCGCGTAC 339977 30 100.0 35 .............................. ATGGAACGATCACGGTACATAATGATGATCGTCGC 340042 30 100.0 36 .............................. CTTGGTATAACAATGTCATGTCGTCTGTTGGTGTTT 340108 30 100.0 36 .............................. TTGCACCCACTATTGACCGCCTCCAAGTAGTTTTCT 340174 30 100.0 35 .............................. GTAGTAACAAGCTGTCTAAACTTGTCAGCATAATC 340239 30 100.0 35 .............................. ACTAGCGTTCGGCAAGCTATCGAGATACCGTTTAA 340304 30 100.0 37 .............................. TCTACGCAATATAGCGCGTCCATAGCCTTTTCGATAG 340371 30 100.0 36 .............................. TATGACAAAATGGGTTAATATGGTGACAAAAGGAAA 340437 30 100.0 37 .............................. CAGGGTTGAAATAATCTGTCATTGAATCGCTTTGGTC 340504 30 100.0 38 .............................. CCCGACCCGTTTTTTATCATCGCTTCATGGAAACAGAG 340572 30 100.0 37 .............................. ATATATTAAAAGGCTAAAAATGGGCGCTCTGGGGCGC 340639 30 100.0 38 .............................. TTTTTGAAGGTCGCGAATGTTTCTCGGAGGGGCATAAC 340707 30 100.0 37 .............................. TTTTTCTGCTCGATGTAAATATCCAAAAGCGGCGTTC 340774 30 100.0 35 .............................. CAAGAGGCGATCGAGGACAAGGCTGAGAATATCGG 340839 30 100.0 35 .............................. TCCAATCGCCCGCGTCGTTCCAATAGCCGCCGCTC 340904 30 100.0 37 .............................. TCTGACCGCTGCTCCACTGATCGGTTTAATTGAGCCA 340971 29 96.7 0 .......................-...... | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ATTTGCGGTTGTCCGAAGAGGAGGAAGCCAAACTGCGAAATGAGGTGAGCCAAATGGAGACGAAGGAAGCGAAGCAAGTGATGGAGCTCATCATCTCGTACGAACAGCGGGGAATGGAAAAGGGAATCCAACAAGGAATGGAACAGGGATTAAAGCAAGGGATGAAGCAAGGGCGTCAAAAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCAAAAGGATATGATGTCGACACGATCCACGAACTGACCGGGCTGCCGGTTGAGAAGATTGAAAGGGTGAAGGGGTAAGGCGGCTCTTCGCCGTCGAGCCTCACATTGTCGTCGACCCCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCATCAAGTCTGAATGGTATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTGATGCGCATGGTTTGGGG # Right flank : CCTGCGCCAGCGTCATAAAACGTTCGGCGCTTTTTTGTTTTCATCAAATTTATAGGGAGTTACATGTCTTGTGGTAGTATAGTGATTCTGAATTTTATAAAAAACTATCTCGTTTTTTATACCAATTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATACAGAGGGGTGATACATTGATCGAAGCAATCGCCCAAATCGGAAAGATGGCGCTCGAGAAGCAGGGAGAAGCGTCGGTCGTTGACCAGTTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAAGGGAGCACCGTTTGGGAAGGATGCGAGGTTGAAGAATGCGGAAGCGATTATAAGAAATATTTGTTTCGTTCTGGATCAACGCGTGGAACCAATTATTCTCCCACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 349707-352139 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 349707 30 100.0 35 .............................. ATTTTTTGTTTCGGTTTCCCCTCGCGCTCCCCTTC 349772 30 100.0 35 .............................. CGAACCATCCGCTCGAAGGTTGATCGGCTAATGCC 349837 30 100.0 36 .............................. TCAGGATAGAGAATGGTCACCTGCACAGGCTGGGTC 349903 30 100.0 37 .............................. CCAATCTATTTCCAACGGTGGAATAGCATCGGTATTC 349970 30 100.0 39 .............................. ATGGGTATTGTCCCAATAAGTCGCCGAAACATAGTTCCC 350039 30 100.0 36 .............................. GCTTCACGATGATCCGGCCGACCACCCTACCGGCTC 350105 30 100.0 38 .............................. TAAAAGTGGCTTCCGGTTTATTCAAAATACTTTCCGGC 350173 30 100.0 38 .............................. CCCGACATGTTCCGAAACTTTAACTCTGGGGCGTTGAC 350241 30 100.0 39 .............................. TCGTTCGCACCACACCAAATGTAGTCGGCTTTTCGACGG 350310 30 100.0 38 .............................. AGACCATGACGCGAATTCAAGATTTGCGTTTGGCCTTG 350378 30 100.0 37 .............................. CCTTCAGGAAGATTGATAGCATTATCCGTATTATTGA 350445 30 100.0 35 .............................. AAGGTTTAATCGAAGGTATGAAGGCGATGACCGGA 350510 30 100.0 36 .............................. AAAAACCTTTTCTTCCTTTTTGAAAGGCTTACAAAA 350576 30 100.0 38 .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 350644 30 100.0 36 .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 350710 30 100.0 39 .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 350779 30 100.0 38 .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 350847 30 100.0 36 .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 350913 30 100.0 39 .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 350982 30 100.0 38 .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 351050 30 100.0 38 .............................. TTCAAGACTTCCTCCGGAGAGCTATCCGGAGAAGCAGC 351118 30 100.0 36 .............................. ACAATACGGCTAAATTCATCTTCGCAGCCAACCACG 351184 30 100.0 36 .............................. AGGTGACCATTGATAAAAAAGAAACAGAAAAACTTC 351250 30 100.0 36 .............................. GGCGGCACGATTGCGATCAACATCCAAAACATGACC 351316 30 100.0 35 .............................. ATCTTTTCGGTGATTGTACTCATCGTTCCGTCTGT 351381 30 100.0 37 .............................. CAATATTCCAGCAATAGGTGACGTTCCAATCGAGACA 351448 30 100.0 37 .............................. CCAGTTCGACCCGTTCCACCACTCATATAAATAAATC 351515 30 100.0 36 .............................. GGGGATGGGACGACCACCAACCGAACCACGCCTGTC 351581 30 100.0 39 .............................. ACGACGATTGCCAAAGAATCGCCAGAACACTCACAGGCA 351650 30 100.0 35 .............................. TTCAGAATGAGTCCTGTCACGGTATACCCATTTTT 351715 30 100.0 37 .............................. AAAATATGACGTTCGATCAATGGAAAAAGGAGCGGTT 351782 30 100.0 35 .............................. ATCATCGGGGGCTGGCGGCAGGAACAAGCACAGCA 351847 30 100.0 38 .............................. ACTACACATTGTACGCATGCGGAAACGGCTACACATAC 351915 30 100.0 36 .............................. AGAGGAAACGCCGCCGTTGTAAACATAGCTTTCAAA 351981 30 100.0 35 .............................. GAAAATCTCGGTTTCGTGGAAGTGTCAGTAAGATC 352046 30 100.0 34 .............................. CTCCGCAAACGACCACGCCATCGGGTGGCCAGCG 352110 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAGACGATGGATGGGAGAAAGAAAACGCAATTTTTTGATCCTGATGATGAGGTATTCCCCCACTTGATTGAATTGAATTTCTGTCACAAATATGCAGCGTACTATGGTGTTCCGCCAGCGGAACGATTATCGATTCAACCGATCTATGTTCATCGGCGTCATCGTGTGGTCACACTATTCAAGGACATGTATATTACAGGCTGGATGGGACATTATCGCCTTTGTTCTTCGCCAGAACAGTTGACATTTTTGTACCACGTCGGTCTTGGCAGTCGAAATTCACAAGGGTTTGGAATGTTTCGCCTCGCAAGTGGATAAACCAGCCGCAAGATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATGGTTTTTGGCGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGG # Right flank : CTATAGAAAGAGACACATCTCATATTCTCTCCCTTTCATGCTCCTCTTATTCTGCTAGGTCTGTACGAATCACTATGTCGCTGTCGTTTCCAATTCAACGGTCTTTCCTATGCCTTACAACGGTATCTATATACATGCTCATTGAAAAATTAACATTTGCCTTCTCCTGCAACTAACTTCCTCCCCCCCATGGCTCAGCTTGCAGATTGAGCCTACAGGATCTTTGGAGGAAGTGTTGCAGCGCTTAGGGTGTGCAGGATAACGGAGAGGTTAACTCTTCATGTTGCATGTATATATTTAAGAAGACTAGTGCTTTTCTTTTCGTGGAAATGCGTTCCCCGTGAGTTGCCATTTTCCCATGTTCAAGTGAAGGGCAAAACTTGCTTATGAGCTCTTTTTGTGAAAAAAATTGTAAAATGTTGCAGGAATATTTGTCTTTATTTTGAAAAATGAGTTAAAATTAATATATAGATACCTTGGCCTGGTTGTATTTGGGTCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 363492-366113 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 363492 30 100.0 38 .............................. CCAAGTACCAAAAGTGGCTTTTGGATTTCAACACGATC 363560 30 100.0 36 .............................. ATCGGAGCAACGTCCCGCCCGATGTCGCCGACGTCG 363626 30 100.0 37 .............................. TATTCGATTTCGATAAGCCCGCTGGCTTCGAGTATTT 363693 30 100.0 34 .............................. TCCATCGAATCATTCGCTCACCTCCGCAGTCCTC 363757 30 100.0 37 .............................. TCGTCGACTATGCGGAAGCCAATCGCGGGCAGGCGCC 363824 30 100.0 38 .............................. TGGTACTGCGCGCGAATCCGCTGGCATTAGCCATTACC 363892 30 100.0 38 .............................. ATATGCCAGTTTGATTTTGTTAAACACCGTTTCAATGC 363960 30 100.0 38 .............................. ACATGGTGGCGTCCAGCCTCGCCGGCCAGCGATAAAGA 364028 30 100.0 37 .............................. ATTTTTCTAATTACTTTAGTATCATTTACTATTTTTT 364095 30 100.0 38 .............................. TCCTGCCGTTCCACTCACCGCCGTTTCGCTCACCTGCG 364163 30 100.0 35 .............................. TGGTATCGGTAGTAATACTCGCGCGCCGCAAAATC 364228 30 100.0 39 .............................. TCGAAGATGAGCAGATAGCTGATAGCGTCATATTGAACA 364297 30 100.0 35 .............................. GCAGACGGGGACAGACGTATCAGAACATTGCTTGG 364362 30 100.0 38 .............................. ATAACCCTGACCCCTTTCTGCCGCAGCAGAGCGATGAA 364430 30 100.0 36 .............................. TTCTCAAGCGCAATCAATTTCCATTTGCGGCTTTCC 364496 30 100.0 36 .............................. AAAAATCGGCGGAGTTTGGAGGAGTTTGGCGTGAAG 364562 30 100.0 36 .............................. AAAGACGACCGTTTCGTCAAAACAGGCAGCCTCCCG 364628 30 100.0 36 .............................. AAACGGAGTATCTTGATAAGCTCGAAGAAAAAAACT 364694 30 100.0 36 .............................. TAATTGAGGTGAAACGAATGGAGAGGCTCGATGTGA 364760 30 100.0 35 .............................. AAGGAGGTGATAGAAGTGACAAAAGAAGAGATTGT 364825 30 100.0 39 .............................. TGTTGCAACTCACGAAGCTGTTTTTGTTCCGGCGTCTCC 364894 30 100.0 37 .............................. TTCAACCCCCCGATGTCGGTGATCGCCACCGTTTTGT 364961 30 100.0 37 .............................. TGAAAATGTGTCCTATTTATCCCGTGATGTAGGTAAA 365028 30 100.0 36 .............................. GCGCAAGAGCCGCTAGCGGCGCAACCGAGCAGCTAC 365094 30 100.0 36 .............................. AACTCCTTCGCCATTTCTTTCAGCGATCGGGACAAT 365160 30 100.0 39 .............................. ACAAGCATGCGTATCAAAAGGTGGCGGCGGTTCCGTTGG 365229 30 100.0 35 .............................. CTGTTTGATAATAGAAGCGTCTTGGCTATCATCCA 365294 30 100.0 35 .............................. CATTCCAGATGGATGATGTTAGCGATCGGATGCCG 365359 30 100.0 35 .............................. GGACGGTACTACCGTCAGAAGGATGGCGAGATCTA 365424 30 100.0 37 .............................. TCAGCCCGCCGTGCTCGGCAAGCTGTTCTACGTATTC 365491 30 100.0 35 .............................. ATAATTGGAAAAGCTCGATTGCCAACGCGGCATTA 365556 30 100.0 37 .............................. TGTCGTCGCGATTGGGGATGTCATTATCGATGCGCGG 365623 30 100.0 36 .............................. ACGCTCCCGGATCGCGAGGATCTCGGGGGCGTCAAG 365689 30 100.0 36 .............................. AACGCCTTTGCCGCCGTTAGCATATATTTTGCATCA 365755 30 96.7 35 ...........G.................. TTCCAATTTTTTTCATTCTACATTCCTCCTTAGTT 365820 30 100.0 35 .............................. GCTTGTTTCTCACTCATCTGATCTGTACTCCTTTC 365885 30 100.0 37 .............................. TCGTACACGATCACGTGTACGTCGAGGCGCCAAACCT 365952 30 100.0 35 .............................. TCCCCTCGCCGACGATCAAGTCGGGCGGGAAATCG 366017 30 100.0 37 .............................. CTGCAAGATGATATCACACAGCCGGGGCGGAAGCTGT 366084 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAAGCCAAGCGCCACCAAGGCGTTTGCTTGATTGAAACTGAAAGTCATCCGACACTTCTCCTGTCAACGTCTCGATTTCCCAAGCCTGCTCAGGAGAAAGGAATCGCGAAATGCTTTTGGCCAGACGCTCCAAGACAGCGCGATCCACCTCGTCTTCGCGCCCAAACGAATAAATCACCTTCGCTTTCGCATATTTGGCCTTCGGATCCCATTCGTTGTGAGCAAGCTGGAGATACGCCACGGTCGTTCCATCTTTGTTTTTGCGTGTTACTCGCCGTATGTACATGCCTATATTATAACCGATATTCAGCTGTTTTAAAAGTTAAAATAAACAAGTCGTGTGCCTATGAAATTCAGTGTTTTTTTCTAGGATCCGCATCGCGAAATCTTTGATATAACAGCATTTTGGCCATTTTCATTTGCCTAAAATGGCCTCAAAACTGTCGAACTCGGGAAAATAGTCTTGGAGGAAAAGGCTTGATATATCAAGATTTTTTGGG # Right flank : CTTTGAAATAAAAGAATCATTCGAACTGGATGAGTAGATGAAAACTGGTGGGGTTGCAGCCAAACCAAAGAAATGATGATGTCGATTCAACAAAGATATGGAAAAAATATTTGGGAATTTATCATCTCGCGCCGAGAAGCCCCCCACTTCCACGCGTGAGCGTAGGTGGGAGAGCGTTCAATGTCCAAGCTTTTGGTTCGTTTGGAGTTGTTTCCATTAGTTGGCTTCACATCATTCGGAAGTAAACGGAGGTTGCAATGCGCTCTAAACTCCGCCATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCTGGGGTGAAGGTTGGGCACGTGACGATTCGGGAAGATATGGATGAGCGGACGGTGATCCGCACCGGGGTGACGGCGGTGTTGCCGCATGGGGGCAATTGGTTTTTGGAGAAGGTGCCCGCGGCTTGTTTTGTGTTGAACGGTTTTGGGAAAACGGTCGGGTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1991595-1989132 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1991594 30 100.0 35 .............................. ATTTGCTGGGGGTTCCGATCAGTGCTATTGTTCCG 1991529 30 100.0 35 .............................. ACGCTGGGGGGTCGCCCCTGCTAGCATTGAGCGAA 1991464 30 100.0 36 .............................. CGACTACAACAACATTCAATTCATCGGAGGCAACGA 1991398 30 100.0 37 .............................. GCTTTCGTTGCCCTCGCTGTCAACCGCTTTGGCTTCG 1991331 30 100.0 35 .............................. TAAGCACATCGTTAATTTCAGGCGCGATGCTTCGC 1991266 30 100.0 38 .............................. TTTTCTACCATGCATCACCGGTCGCCGGCCTCAAGACC 1991198 30 100.0 38 .............................. TACCATCCAACAGGAGATCACACAAGGATTGGTGCACG 1991130 30 100.0 34 .............................. TCCAAATAGCATCATCATGCTATACACCGGATTC 1991066 30 100.0 35 .............................. ACTGTAACAGCAACATGTAAAAATCACTAGCTCTC 1991001 30 100.0 36 .............................. ACGAGAAGCCGTATCTGTGGGAGCGCATGCCGTTAA 1990935 30 100.0 40 .............................. ACCAGCCGAGTTCAGTGGGAACATATCCTGGTATAGCTGC 1990865 30 100.0 35 .............................. ATTTAGTTAATTTTCCGGAGGCTGTGCCGCTATAC 1990800 30 100.0 35 .............................. GAGCAACTCATCAAATACACCAAACACAGCAAAAA 1990735 30 100.0 34 .............................. TGGGAAAAGTGACTACGAGTTGGTGCGTGATCGG 1990671 30 100.0 39 .............................. TACCCATAGCCCTCATTGTCATAAATCGCAAAACGTTCC 1990602 30 100.0 37 .............................. AACATAATACCTGCTTCATCTATCAGAACTAAACACT 1990535 30 100.0 35 .............................. GAAAAACCTGAAAGTGCTTGCTGGAAAGAAGCCGT 1990470 30 100.0 35 .............................. ATCGTTTTAGAAACAGCGTCAGCGATGGCTCTTGC 1990405 30 100.0 35 .............................. CATGCTGTAGTGATGGAAAATCTGACCTGTACCTT 1990340 30 100.0 37 .............................. CCGTTGTGGCGGATTTCCAGCATAATAGCGCTCTACA 1990273 30 100.0 36 .............................. TTCGGTAGTGTTTGAGGGCGCCCAAGTTGCGAAACC 1990207 30 100.0 35 .............................. TTGACACGGGACGTCTTGTTGGCGCTATCCGGCAT 1990142 30 100.0 36 .............................. GTCATTTTCAATCCTTGTTTTTTCTAACCTCCCTAC 1990076 30 100.0 38 .............................. GCCCGCCCGAGACGATCGGACGGGCAATAAGGGGAGTG 1990008 30 100.0 38 .............................. AGAGCTTCGACAAGTGTCATAGTGAATCATCCTCCCTA 1989940 30 100.0 38 .............................. TGATAAAATGTTTCCAATTGTTCATGTATTTTGATCGG 1989872 30 100.0 35 .............................. TCCCCTGCTATTGCGGCGGCTCTCGTTCCACTCAT 1989807 30 100.0 36 .............................. AACCGGACGAAGCAAGGGCTAAGGAAGATTTGCCGC 1989741 30 100.0 37 .............................. TGCGGTGTCGAACATTGACAAAACCGCTCCAACGCTG 1989674 30 100.0 35 .............................. CAACATTGACGCCCGCCGCTACGACCAGGCAAAAT 1989609 30 100.0 36 .............................. AGATCGACAACTATTTTATGGACTGGTTCAAGATTA 1989543 30 100.0 36 .............................. CAATAGAGACATCAATACCATGCCGTTGCATTTCTT 1989477 30 100.0 36 .............................. GGCTTCATCTCGCCCCAGCTCGCGCAGCCGGAAACG 1989411 30 100.0 38 .............................. CAACATTGACGCCCGCCGCTACGACCAGGCAAAATTGG 1989343 30 100.0 35 .............................. ACGGGTCGCGCATGCTTTCAACTCCTCGCTTGTCC 1989278 30 93.3 37 ..................GA.......... ATTTTCACTTCTTGAATAATGTTAGCCGGATCATTTT 1989211 30 93.3 21 ............A....A............ AATCACGTGGTGCAGGAATAC Deletion [1989161] 1989160 29 86.7 0 ...............G..-....C....G. | ========== ====== ====== ====== ============================== ======================================== ================== 38 30 99.3 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AATCCGTCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAGCTCGGGCCGAATGACCGCCTCGTCGCTCCGGCGACGCAATATTATGCTTTATTCGAAAGGGTGCCGTTCGGGCTCGTTAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCCCTCCAGCAAACGCTCAAACAACGTGGGGTTGAAGAAGCGCTTTGGCAATACGCGGGGCTTGATCGCGGCCATCCACTCATAGCGGCGGTGAAGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCCGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTGGGG # Right flank : GCTATACAGTAACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCACGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTATGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2961416-2960188 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2961415 30 100.0 36 .............................. AGTGTATAGACTTCTTGAGTTCCTTTAAAAATTCGA 2961349 30 100.0 37 .............................. CGGTCGCTAGGCGTACCAGCGGAGGATGCGCGCATGA 2961282 30 100.0 37 .............................. CCTGCGAGCGTCCGGGTTTCTTTTTATCGTCAATGGG 2961215 30 100.0 35 .............................. TATTCCGCGTCGTACGTCTGTTTCTTTGGATGTCT 2961150 30 100.0 35 .............................. AGGCAAATCCTGCTGTTGTGGCTGTTCCGGCTGGC 2961085 30 100.0 38 .............................. TTGGACAGGACGAAGAAAGCACGCTGAAGAACCTCGCC 2961017 30 100.0 36 .............................. CACTTGAACAGGCATGGTTCGGCTGGTGGTCGTGCC 2960951 30 100.0 39 .............................. TTTTTCCGGTTCAACGTGCTTCCGCAAACCCTCTTGCGG 2960882 30 100.0 35 .............................. TATAATACTTTTGCGTATGTAGCGGTCATGTTAAT 2960817 30 100.0 35 .............................. TTGGTCATCCTTGGCGCGTCTGGTGGGCTTTTCCC 2960752 30 100.0 36 .............................. CCTGTTCTTTGAAATCGGACGACTGTACGACAGCGT 2960686 30 100.0 38 .............................. CTATCCCATGCATAGTCTTTTCCGCCAAATTCAAATAC 2960618 30 100.0 39 .............................. TCCCAAGACAAAACCAAGGGGGGATTTGAAATGACACAT 2960549 30 100.0 37 .............................. ACATGTCCGCTTCATAGCGAGCGAGTCGGTCAATGAT 2960482 30 100.0 36 .............................. CCGCCAAATAAATCGAGTGCTTCGTCTTCATCTTCT 2960416 30 100.0 37 .............................. TCACGAAGAAGCTGCCCATCTTGTTGTCTGGATGAAA 2960349 30 100.0 36 .............................. TTTCTTCATTACTGCGAAAACGAACGACACCACAAA 2960283 30 100.0 36 .............................. TATTTGGAAAGTTGTTTAATCATGTACGGAATGGGG 2960217 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CTCGCGGGATGGCACAACGGAAGAGGCAAACTGTCAACAACGGCATAAGCATGGTGTTGGCCACGTTTGGCTAGTTCATGACGAATCCATTTGACCGCGAAGCCAAGCGCTCGGCAGCGGCGGTTGTATCGGGAGCGTTCAAGAAACGAGCCGTTTGTGAACAAATTTCCCGTGACAAAGCGATGCCAGGCTCGTTCAGAAGAAAAGCCCAGCAGCTTCCCCAAAAGGTGAACCGCCATGACCACTTCGTCTTTTTGCTTGACCAAGTGACGGTTGCGGCGATGAAGATACATTTGAATCAACGACAGTTGAGCAGAAACAAAACAGAAAATAGCGGCATATTGTTTTTGAAGTTTGGCTGGATCTGTAGTAAAATGAAAGTGCTCTTGCATGGGGGATCTCTCCTTTCGAATGTTGGGTGACACTTTCATTCTACTGGAGATCCGCCAGCAAGGGCTATTTTTATGCTTGTCTGAGTTTTATCTAGCACCACGGGTAAA # Right flank : TGAAAAAGGCAGGAGCGCAAATTCCCCTTTTGGGTTTGCGCCCTGCCGTATGATTAAACATGGAAACTCTTTATTTGCAATCGTTCCGCTTTCGATGGGTCGGATCTGACCATCGCCAAAGCGATTTCGGGCTTGGGCGCCGAACCTAGTGCGCTGGTTACAGGCGCGCCGCCCATTAGGGTACACACTACCTCGGTGGGACGGGGTGATGACACACCTCTAAACGTGGGCGTTGTCCGAACCAGAAATAGATAAGGACGTGGGCGGCTCAAGAATGGGGCTGACATAAAAGCCCTTTTTGATGAAATTTCACCGAAGTATGTGAAAGAGACCGTCTCTGAAACCCTTGATTTTACCGGGTTTTTCGCGATGGCCTATTTTTCCATGTTACCTCAGATAGAAGCATTACCGCTCTTTTGGGTCAGCCCCGTATCAAAACTCCAGATTTTCCGCTGACGATAACTGATCCAGCCGCTGATCAAAAAGCAGCAAACAGACAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2963957-2962467 **** Predicted by CRISPRDetect 2.4 *** >NC_014915.1 Geobacillus sp. Y412MC52, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2963956 30 100.0 35 .............................. GACAGCCCTTGCACTTGAACAGGCGTGGTTCGGTA 2963891 30 100.0 35 .............................. GTTGGGATGGTGGGGATGATGGAGAGCCCAGACTA 2963826 30 100.0 36 .............................. CTAGTACGGCATTATGACCAATTTTTGAAAAAGTTA 2963760 30 100.0 37 .............................. AAAAACCCCTCCGCGTTGGCCGTCTGCGGATTGTCAA 2963693 30 100.0 38 .............................. ATTTTTGTCACGTCCTCGCCCCACACGAACGTCGAGCC 2963625 30 100.0 36 .............................. CGTTGACGGTGGATGGTAAAGTCTACGCGTGGGGAT 2963559 30 100.0 35 .............................. ACGGAACAACAATACAATGATCTGCTCGCGACTGC 2963494 30 100.0 36 .............................. ATCTATATATCTAACAAAACGCAATACCCAGCGCAC 2963428 30 100.0 37 .............................. GCCTTCCCGTTCATCCAAGCGCCGCAACGACCGCATT 2963361 30 100.0 35 .............................. CAAATTCAAATCAGCCACTGAAGTTTACGATACCA 2963296 30 100.0 37 .............................. TCTTTTGCACGCAGTACCCGACCAGTGACACCTTGCC 2963229 30 100.0 36 .............................. ATGTTTCAAGTTTCATAAATAATACTCCTTTCGTCC 2963163 30 100.0 37 .............................. CATTCAAGCGGGGAATACATCGAGAGTGACCCGCTCA 2963096 30 100.0 35 .............................. TTCGACTTCAGCACCAAAAAGCCAGCGGCACGGCC 2963031 30 100.0 35 .............................. CGGACGACGAATGGAAGCGATACACTGCCGCGGTT 2962966 30 100.0 36 .............................. GACGCAAATGGACAAGTACCGGCAACGCAATTGCCG 2962900 30 100.0 37 .............................. ACTTCAACCGATAATATTTCCGCTCGCTCATGCCAAG 2962833 30 100.0 37 .............................. CTTTGCAAATCTTCAAAAATCTCATTGGGCATAAAAA 2962766 30 100.0 38 .............................. AAAATAACCGACCTAAATCTCGAGTTAAAACGAATTCA 2962698 30 100.0 38 .............................. TGAGCTGGCTTCATAAACAGCCTTGTACTTTCCCGGGA 2962630 30 100.0 35 .............................. ATAAAGGAGTAAAAGAGTCAGGCACCTTAGAAACA 2962565 30 100.0 39 .............................. GCGGAACTGTCCAAAGGGTTGATGACAGACGAACAGTTG 2962496 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGAAACGTATTTGCGGTTGTCCGAAGAGGAGGAAGCCAAACTGCGAAATGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATTCAACAAGGAGTCAAACAAGGGATGAAGCAAGGGCGCCAAAAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTATGATGTCGACACGATCCACGAACTGACTGGGCTGCCGGTTGAGAAGATCGAACGGGTAAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCAATCCCCACATTGTCGTCGACCTCCAATCGTGCGAAAACCCCGGGGGATCGACGACAATGGTTTTTGGCGGCTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAACGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATACAACAAGCATTTTTGGG # Right flank : CAATGGATGACAACCTGGCGCTTTCCGAGAAGACAAAGTTTTTACCCGTGGTGCTAGTTGAGCGTCAGCGCTCAACCAGCCCTAGTGTGACCAGGGAATAAGCCACCAAGATGCCATCGAGTGCCACTTCAAACCCGGCAATGGAATTCGCCCGAATGTCGGTGATCCGGTATTGGTCCACGAGAATCGAAAACACCGTCTCGATGACTTTGCGTTTTTTCCTGATCCATTCTTCCCATGCCTTGGATGGGCCGTGCTTTTGATTGTGTCGAGACGGTGTCCAGAACGCGGCTTGGTGTTCTTCATACAGCTTTTCTCGAAGAGCGCGGCTGATGTACCCTTTGTCTCCAAAGTTGTAGGGATGAGGGATTTGAGTCATCACCGTTTCAGCCGCTTTGACGTCGTGGCAGGACGCTTCCGTCACGACATAGCCCATGGCCAGCCCTTGATTGGTCACTTGAAGATGCAGCTTGAAACCGTAGTACCATTGCTTTTTGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //