Array 1 969564-971099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019213.3 Escherichia coli strain WCHEC050613 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 969564 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 969625 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 969686 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 969747 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 969808 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 969869 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 969930 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 969991 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 970052 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 970113 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 970174 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 970235 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [970259] Deletion [970276] 970277 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 970338 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 970399 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 970460 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 970521 29 96.6 32 .........A................... TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 970582 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 970643 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 970704 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 970765 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 970826 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 970887 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 970949 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 971010 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 971071 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 996649-997592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019213.3 Escherichia coli strain WCHEC050613 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 996649 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 996710 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 996771 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 996832 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 996893 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 996954 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 997015 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 997076 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 997137 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 997198 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 997259 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 997320 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 997381 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 997442 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 997503 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 997564 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //