Array 1 14658-16218 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNU01000324.1 Geobacillus stearothermophilus strain D1 contig_324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 14658 30 100.0 36 .............................. TTTTGAACGCGATAAGCAGCTTCTCCCCTTTGCTTG 14724 30 100.0 36 .............................. TATCGCCTTTCTGATTATAGTGTACTACACTTTTAT 14790 30 100.0 35 .............................. ATATTCGACGTAACCAAAAAATACACCTTTCATTA 14855 30 100.0 38 .............................. CCTCTACGAGATACAAAATGTCGCCTAGATTGTCGCTG 14923 30 100.0 38 .............................. CACGCAAGCGCACAGGCGGTTACGGAAGCACCGGAAAC 14991 30 100.0 35 .............................. CAACAAAGAGTCAGACGATGATACGCTTGAGATCA 15056 30 100.0 37 .............................. TGGAATGGGCGCTGGCTTGGCAGGTGGTGATTGGAAT 15123 30 100.0 37 .............................. GATATTTTCCCGCGCGTTTTCTTGGCCGGGATGGTTC 15190 30 100.0 35 .............................. CAACGAAGGAATTCCTTCACCCAGCGCTCTGCTTC 15255 30 100.0 35 .............................. ATGTAATAATGTTCTCTGTTTCTTCAGCGTCTAAA 15320 30 100.0 36 .............................. ATGTCATCGTCCTCAATGTACGCGCATTGGACGATT 15386 30 100.0 39 .............................. TACCAATCGGACAAATGTTGATGATTACGTCGGCGTACA 15455 30 100.0 36 .............................. TATCGCCTTTCTGATTATAGTGTACTACACTTTTAT 15521 30 100.0 36 .............................. AGAAAGTATATCGTATTGCTAAATTTGCGAATCCCT 15587 30 100.0 38 .............................. TCTACATCGTCGATCGGTCTGAGGGCTTGCGTCGACTG 15655 30 100.0 38 .............................. CCACATGCTAAACGGCGGCGTAACACGAATGGGAAAAA 15723 30 100.0 36 .............................. ATCTTCTTGTAGTAGTGATCGCGCAGTTCCGGTGCG 15789 30 100.0 40 .............................. CAAAGGTATGATTGACCTAGCTAGACGAAGTGGAAATATC 15859 30 100.0 38 .............................. TTCGTATCACAATTTCGGACTAGCCTTTGATTTTGCGT 15927 30 100.0 36 .............................. GCATCGCATCACGCAAAAATCCGTTTTGGTTGCCAG 15993 30 100.0 35 .............................. TTCGGATTGATAACGAAAGGTTTTGCGATCTCTAA 16058 30 100.0 35 .............................. ATGTGCTTGGTGTAATTATGATAGCCCCATGGTTT 16123 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 16189 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 24 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGGG # Right flank : TAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAAACTATAAAATTGATCAAGTTACGGAACAAACGCTTGTCGTGGGCATCGATATCGCGAAACGAACCCACTACGCCTGCTTCGTGGATGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 396-691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNU01000078.1 Geobacillus stearothermophilus strain D1 contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 396 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 463 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 532 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 598 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 663 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GCGAACGGAAGAATCGTTGGACAACGAGATGACACCGGAGAAGCTGGCGTGATTTCATCCATTCGACCTTGAGTCCCTAAAGGAGCTTGGCCGGCCTCCGCCTGATGACGAGACCGAACGAGGGAATGTTGGCGCGAAGACGCCCGGAGACATGGGAGGGTTCGTCCTCATCAGCGACGCGGAGATCCAAAGGGTGCATCGAATACGCTTCTCCCCACGGCAGGAAAATATACCCATCCGTGGCCGCGAAGCGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCATG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4580-5120 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNU01000080.1 Geobacillus stearothermophilus strain D1 contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4580 37 100.0 34 ..................................... AAGGATATATCGAAAATCTCCCTCCGGCAAAAAC 4651 37 100.0 35 ..................................... AATCCGATTGTCATTGTTTATCCCCTTCCTTGTCC 4723 37 100.0 35 ..................................... ATCGTCCAACGTTCTAAAGGATTAGGCGAAAATAC 4795 37 100.0 35 ..................................... ATCGTCCAACGTTCTAAAGGATTAGGCGAAAATAC 4867 37 100.0 34 ..................................... CCGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 4938 37 100.0 37 ..................................... AAGGAGACGCAGGCACAAGCGCAGCAAAGCCGTTAAA 5012 37 100.0 35 ..................................... ACAAGGAAATTTGCGCTATTATCGACGACGTGTCC 5084 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : CAAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //