Array 1 210816-211065 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838038.1 Haemophilus sp. HMSC71H05 Scaffold169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 210816 37 100.0 34 ..................................... AGCCTACAGTAGTGCGCGCTAAACTATCAACAGA 210887 37 100.0 34 ..................................... TTTAATATTGATAGGAAATTCCCACTATGTGAGA 210958 37 100.0 34 ..................................... ACCGGAGGTTGCGGACATATACCAGTTATAATTT 211029 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 100.0 34 GTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGAC # Left flank : GACATTATTTTCCAATTTTAGGAGTAAAGCATGGCTCAATATTTAATTGGGTATGACATTTCTGATCCCAAAAGATTACAACGAATTTATCGTAAAATGACACATTATGCGACGCCAATTCAATACAGCATTTTTTTATTAGATGGCTCAGAGAAATTGCTCAAACAATGTTTGGCTGAAATTATGTTAATCTTCAATAAGAAAGAGGATGATTTAAGAGTTTATCCTTTGCCTACCAATACAACACAATGGCGACTCGGAAAATCAAGTTTGCCAGAAGGTATTATTTGGACAGCCTTGCCAACAAGCTTGACATTATAATGCTAGAAAAAATCAAAAATAGAGGTAAAATAGACCGCACTTTTGATTGATTTAGAAAGGAAAAATATGCAAATTGTTTATTATTTGCTCAAATCAAGAGCCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCCTGCCTCCAGCATACCGCTGCA # Right flank : CAAATCCGAATAATCGTATTTACAACCGTAAATTTGTCGAAAAACATCGCCCTGTTCGAAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACGTGCCTAGTTTTAAGTGGGCGGTTGCATCGATATGTCGAAAGACATAGCCCTGATCGAAAGGGATTGAGACTCTTCTAGTTTCATACGTAGTTTTTGAATACGTGTCGAAAGACATTGCCCTGATCGAAAGGGATTGAGACGCATAGGTCTCAAGACCCTCTGCAACGTTACTGAGTCAAAAGACATCGCCCTGTTCGAAAGGGATTGAGACGTCGGTGTCGGGCGGTTACATTCTGACTACTCCGGTCGAAAGACATCGCCCTGTTCGAAAGGGATTGAGACTTACGGAACTTGCTGAGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 211297-211974 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838038.1 Haemophilus sp. HMSC71H05 Scaffold169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 211297 34 97.1 36 ............A..................... GACTCTTCTAGTTTCATACGTAGTTTTTGAATACGT 211367 34 100.0 37 .................................. GACGCATAGGTCTCAAGACCCTCTGCAACGTTACTGA 211438 34 91.2 37 ...A........C......T.............. GACGTCGGTGTCGGGCGGTTACATTCTGACTACTCCG 211509 34 94.1 38 ............C......T.............. GACTTACGGAACTTGCTGAGCACTGATACTTTCGCATC 211581 34 97.1 36 ............C..................... GACTGGTCTTGAATGAATTCTAACCATTCTTCTGGT 211651 34 97.1 38 ....................A............. CACTCTTGTTGTTTTTTGATTTTTCAAAATCTTTTACC 211723 34 100.0 38 .................................. GACAGACTTTGGGCTTGAGCAACTGTGTCTGCTAGGTT 211795 34 100.0 40 .................................. GACCCAAGTAAGGCAAAACATAGTTCTACCGCCTGTTGTT 211869 34 100.0 38 .................................. AACGTTTTTTCGTATTTTTAAATACGATTTTTCGTATT 211941 34 76.5 0 ...A.......CC......T.TT........GT. | ========== ====== ====== ====== ================================== ======================================== ================== 10 34 95.3 38 GTCGAAAGACATTGCCCTGATCGAAAGGGATTGA # Left flank : CCTCCAGCATACCGCTGCAGTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACAGCCTACAGTAGTGCGCGCTAAACTATCAACAGAGTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACTTTAATATTGATAGGAAATTCCCACTATGTGAGAGTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACACCGGAGGTTGCGGACATATACCAGTTATAATTTGTCGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACAAATCCGAATAATCGTATTTACAACCGTAAATTTGTCGAAAAACATCGCCCTGTTCGAAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAACATCGCCCTGTTCGAAAGGGATTGAGACGTGCCTAGTTTTAAGTGGGCGGTTGCATCGATAT # Right flank : ATATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATTGACCGCACGTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCACCTTTCTATTTATGACTTTTCTATAATTCACGCCGTCAGTAATTAATTTTTAGCTCAGACGATTGAGTGATAATTTAATTTATTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGACACATAAAAAATTGTTCTAATTAAAAAATATGAGGGAATGAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAACTTGGGGAATGCACCAGAAATTCGGGCGATGCAAAATGGTGATACGGTTGCTAATTTAAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACGCAGGAAAAACGTGAAAATACCGAATGGCACCGCATTGTGCTTTATCGTCGATTAGCCGATATCGCAGGTCAATATTTGCGTAAAGGATCAAAAGTTTATGTTGAGGGGAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGATCGAAAGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 215999-216472 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838038.1 Haemophilus sp. HMSC71H05 Scaffold169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 215999 32 84.4 41 A..C...T...........A.T.......... GAGACCCGTAACCGTCTAGATAGACGTTATCGCCCCAGTTC T,TT [216003,216008] 216075 32 100.0 41 ................................ AAGACTCTGCACGTTTACGGTTTTTACGCACGTCGTGATCT 216148 32 96.9 40 ......................A......... AAGACTTACCTTTCATAATTGTTTTGTATTTATTTCTAGG 216220 32 100.0 41 ................................ GAGACCAATTTGTGTTTGCATAGCATTTGATAAATCTTGCG 216293 32 100.0 42 ................................ AAAACTAAACTTCTTTGGCTTTGGCTTCAATACGGTCTACAA 216367 32 100.0 42 ................................ GAGACACGCCTGTTGGATTGCGATCTGGGTGGTATTTAATAG 216441 32 90.6 0 ............G......T.T.......... | ========== ====== ====== ====== ================================ ========================================== ================== 7 32 96.0 41 GTCGAAAGACATCGCCCTGCTCGAAAGGGATT # Left flank : TAAAGAAGGCGCAGATATTCCTTTGAATATTTTAAAATTATCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCTAGGTGGTAAATAAATGCTGAAAACCCTATTATTTTTGACCGCACTTTATTTAAAGCGTGAGGGTAGCGTCTAAATCCTCAACCGAAACCTACAAGCCTTACAAAATCCCCACCAATTGATTTCTGTATATCACGCATCATTTTCAATTTCTTACCTTAGGGCATTTTCTCGGTCTGGTTTATATTTTAATAAAGTATTTCAATAAGTTATTTTCAATTTTACCAATAAGGCTGACATTCTAGCGCTAGAAAAAATAAAAAAATAACGGTAAAATAAACCGTACTTTCGATTGATTTAGAAAGGAAAAATACATGCAATCTGCTTATTATTTGCTCAAATCAAGAGCCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCCTGCTTTCAATAT # Right flank : TTTGTAAGGATTTATTTTGTGAGAGGTAAAGAAAACGGCCAAAAACCTATTGATTTTTGACCGCACTTTATTTGAAGAGGGGATTAACGTTTAAACATGCCGCCTAAACCACCGAGGCCACCTAAGCCGCCTCCGCCCATTAAGCCTTGCATGCCGCGCATCATTTTCGCCATGCCACCTTTGCGCATTTTCTTCATCATGCGTTGCATTTCGTCAAATTGTTTCAGCAACTTATTCACATCTTGAACTTGTGTGCCAGAACCTAATGCAATACGACGACGGCGAGATCCTTTGATAATATCTGGATTGGCACGTTCTTTTAAGGTCATGGAATTAATGATGGCTTCCATTTTGATAAACATTTTGTCATCTACTTGATTTTTGACATGATCCGGTAAGTTTTTCGCACCCGGTAATTTTTCAAGCATCGACATCATGCCACCCATTTTTTTCATCTCACGAAGCTGTTCACGGAAATCGTCTAGGGTGAAATCATCGCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATCGCCCTGCTCGAAAGGGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //