Array 1 63205-64240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 63205 32 100.0 33 ................................ CCAAGTCTGGTAAACCAATGTTGACCTGCTGGA 63270 32 100.0 35 ................................ GGACAACTGGACATATCAAAATGATTGTAGAATTG 63337 32 100.0 36 ................................ GCGAAACACCCCACCGTTAATTTCACGCAATTTCCC 63405 32 100.0 33 ................................ AGACGGTACGTTAATCGTACCAATGACAAGGAG 63470 32 100.0 36 ................................ ATTTTCCCATCATTATCCGTGATGGAGATTTTAAGC 63538 32 100.0 34 ................................ ACCCAAAATCATTTTTTCTGTGTCGGACAGCTCA 63604 32 100.0 34 ................................ TTGTGTAAAAAACTGATTTCGAATGAGCGCCAAA 63670 32 100.0 36 ................................ CTCATAGATTAAATCTTCCATGCCAAACATTTTACG 63738 32 100.0 38 ................................ CAGTCCCGCAACATGAATGGGACTTGTGGGCTCTTGAC 63808 32 100.0 35 ................................ CATGATGATGTCAAAACGCTCAACGATGTCGCCGT 63875 32 100.0 34 ................................ TTTCGCATCGGTCACCCTGCGAAAAAATACATAA 63941 32 100.0 35 ................................ AATCAATTCAGATTTAGAGTGAAATAGGTCCTCAA 64008 32 100.0 39 ................................ AAAAACTCTCTCACCTAATGCATTTGCTATTGCTAGCAA 64079 32 100.0 34 ................................ CGGAAGGGAAGACCCTACTGAAAGCAAGGAAAGA 64145 32 100.0 32 ................................ TAAAAAACGAGATGCCAACGGGTCGCCCGGAT 64209 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 100.0 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTACAAGAACAAGGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAAAGCCATTAATTTTCTAGTGCGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTAATTTTGAATGTTTCTCTCAATTTTCGC # Right flank : TTTTTGCGTAGACTACGAGGTCACTCCCGCAGGTTGTAAAGGAAGCTCTGGAAACCAGAAACAAAGCAGCCGTGGCAGACGTTACGAGCTTGCCTCCAATATGCTACATCGATGGGTAAAAGACTATGAGTCAGGAAAATGAGGAGTGATTTCGGTAGAGGGGATTTGCCCTCTGGAAACAAAGAAGTTGTCCCAAGAAAATGACCACTTAAAACGGCTGCTAGGGGAAAAAGATCTTGAGATCGCTATTCTGCGTGACCTGGCAAAAAAGAAAAACCCTCACTTGCTGACAAAGTTGAAGTAGCCGAAATCTACATTCAACAGGGATACGCTATAACGCTCGTGCTACGTTTGGTGAAAGTCCCACGTTCGACTTATTATTACATGAAAAATAAAAAAGTCATGAAGAAAACAGTTAGTGAGGGACGTCCAGCGCCAGGGTATTCCTATCAAGCGAATGGAACAAAAGTACCTGATGAACATCAAGAATGGCTCATGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 77184-78097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 77184 32 100.0 35 ................................ AAGATCTTTTTGTTTTAATTCTTTTTGTATATCTT 77251 32 100.0 36 ................................ AAAAAAGTCATACCAATCAATACCTTGTGCAACAAG 77319 32 100.0 36 ................................ TGGAATTCTATTAGCGAAATCCAGTCAACGAGCATT 77387 32 100.0 37 ................................ AACTCTACTGCATTGTCCGCGTTAATCTTAATCTCAA 77456 32 100.0 40 ................................ TCATACCTTTGGCAATCATGTATTCACGGAAGCTTATAGA 77528 32 100.0 38 ................................ TATTATTTGCGTCAAAGCAGCATGTAACTCTTCGGCCC 77598 32 100.0 34 ................................ GTCATAAAGGAGCTGATCTAATTGGATGTTTTCG 77664 32 100.0 38 ................................ ACCAGCTTCCGTATCCCAATCACAGCCATTATAGGCTA 77734 32 100.0 36 ................................ TTTGATTTTTGTTGAATTGATCATTTTTTATCCCTC 77802 32 100.0 33 ................................ GAAAAACAAATACAAAAATAATTACACCAAGAA 77867 32 100.0 34 ................................ AGATTTCGGGACCAGCGATGACAAAACGTATGAA 77933 32 100.0 37 ................................ CCTTGAAACTCCCAAATTGGTTAATTAAAAAGATCAC 78002 32 93.8 31 .............................T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 78065 32 78.1 0 ..TA...........A..AGT..A........ | C [78093] ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAAGCGAAAGACAGAGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATATCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATTAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1637592-1637168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1637591 30 93.3 36 ......T........G.............. TGTCGGATATCCGTCTGATTTTGATTTAATCGTCAA 1637525 30 96.7 35 ................T............. ACTGGAAATGGGATCTTGCAGATATTCTTTTGCGA 1637460 30 96.7 36 ................T............. CTATGGACCGCCGCCCGGTACTGGTCGGTTTTACTG 1637394 30 100.0 35 .............................. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 1637329 30 100.0 37 .............................. GGCTGTGGGTGAGCCTGTCAATCACATACTTTTTAGC 1637262 30 100.0 35 .............................. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 1637197 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTGACAGTAACACAAGGTGTATTGAAAC # Left flank : GTTCCCACCCGCGTATGCAGCCCATGTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTTCCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGGCTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGTTAATCTGGTATTGAGCCATTTCATAACACCTCATATATTTAGAATTTTGTGTCCCAACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTTTGGAACCTAGCTTTTTACACAATTATACGGACTCAACTGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 4 3997147-3998998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3997147 32 100.0 35 ................................ AATATGGAGCATCTGATGGAACTGGTTTAATGCGG 3997214 32 100.0 33 ................................ CCATATACCACAAATGACGCGACCCAGTTGATA 3997279 32 100.0 33 ................................ ATGAGTCTCTGTTTTGCAGTAATAGCCCGGGCT 3997344 32 100.0 36 ................................ GAGAGATTCTACCCGTTTTACTTCCGACAGCTTTTC 3997412 32 100.0 35 ................................ TTTTTCCACATCCTTAAACCGGGCAAAATATTCCG 3997479 32 100.0 38 ................................ ACATACGTTGAGCTATTCGCGGCATCGGAGGATTTCGA 3997549 32 100.0 33 ................................ ATTTTCTCAAAAGTTTTCCCGTCAACATGGACC 3997614 32 100.0 34 ................................ TTCTTAGCCATGTAAATAATCCCCTTTCGCTAAC 3997680 32 100.0 37 ................................ TTCTCTTACATCAACAATCCCTTTATAAATAAAGAGT 3997749 32 100.0 37 ................................ CCAAAGCGTTAGTTCTCTTCGGTTTACTTTGTTTTTA 3997818 32 100.0 36 ................................ TTTTAATATCGCATTGCCTAATCGCGTTTTAAGATC 3997886 32 100.0 34 ................................ TCAAGCTCGGCGACCTCGGCTCTGCGTTGGTCTA 3997952 32 100.0 35 ................................ CCTTGGGCGTCGAAAAATTCAATACCCGTTTGCTT 3998019 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 3998086 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 3998153 32 100.0 38 ................................ TACAACGTCCCTTTTAGCTCCGTTTAGTTTCTCGTACA 3998223 32 100.0 33 ................................ GCTAATGGAAAACAAAGAGAATCATATATCAAA 3998288 32 100.0 34 ................................ CTTGAAAACTCCTGTTTTATTGTTCATCATGGAA 3998354 32 100.0 37 ................................ TCGAAGTAATCACTTCCAGCCCGGGATATCTTTAGGC 3998423 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 3998489 32 100.0 35 ................................ TGGCCGCCCCTTGGATATTCGTACAACGCACTTTC 3998556 32 100.0 36 ................................ TAATTCAAGTGATACGACCATAGCCGCATTGATGTA 3998624 32 100.0 36 ................................ ATGTTTGCGTCAACGACGGCCTGTTGCTGCTTGCTC 3998692 32 100.0 38 ................................ ATTAAAAATTTACCAAGTCAAGCCATTGACTGGGGAGC 3998762 32 100.0 37 ................................ ATCCGGTGCATCAGAGATTGGCTCAACTGTATTTCAA 3998831 32 100.0 35 ................................ CATCACCGGGGTGCAGATTTATTGTCAGCGATTTT 3998898 32 100.0 38 ................................ ACCATGAGTTTGCAAAATACATTCAGCGAGAAAATCAC 3998968 31 78.1 0 ..............-.T.C...CTT...G... | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 99.2 35 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTGTTAATTACTTACGATGTGTGTACGACCAATAGTGATGGGCAAAGAAGGTTGCGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGAGTCCAGGACTCTGTCTTTGAATGCAATGTAGATGCAGCCCAATTTGCCAGTTAAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGTTTTATCAATTAGGCAATAATTACAAGAACAAGGTTGATCACATTGGTATGAAAGAATCCATTGATTTGGAAAAGCCATTGATTTTCTAATGCGGATGCATGGTGCGAATGTGAAGTGCACATGAATTTCCTGGGACATTCGCACCATGCATTTACCATATAAATCCATTTTATTGTCTATAGGCATTTTGGGATTCATTCAAACTGAACAGAAAGATCATTTTTTTGAATGGTGTGATCAAAATATGTTTAGTTTTGAATATTTCTCTCAATTTTCGCT # Right flank : TGGAAATATTATTTCCACCCATACTTCCAGGTTAGACTACAAATTGATTTACAAGATAGTAATCGGGATACCTAATAACTCCAACATTTACAAGATGTTTACTGCTTGAGCTACTATCGAACCAATATTGAATATCAGTACCTCTTGTCAAATATAATGCCTCTGATTGGGCATCGTGATCAGAAAAATTCATGATTACTTGTTTGCAAGATGAACCGATTTCTGATGAACAATCTTGCTGGGTAGCTGCAGATGATGGAATTGGAATTATGAGTAAGGCTGCAAGAATAGAAAAAATAATTGCCATTTTGGATTTTACATGTTTCATCATATTCATATTAGCTTCCTTTGGTTTGAATTTTTACACCCTCCACACAATTGCAATCCTTCAAGCTTGATATATTGATAGAGGGTTCCATCCCTTCCTGCCACAAAACCACATTCACTCCTTTATTAGTCTATTATTGTAAATCGTTCTCCTTAAGATCTATTAACCTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 4402526-4404168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 4402526 32 100.0 38 ................................ ATTTCTGTTGTACGTAGTGCTTTCAAACGTCCGGATAA 4402596 32 100.0 34 ................................ AGTCTCTGAACTTGTAGTGGCTGGAATCACTACA 4402662 32 100.0 36 ................................ CTTGATCTCAAGCTGAACAACGGTGATGAACGTCTG 4402730 32 100.0 35 ................................ TCAACATAATTTTGTTTTCTAATTAAAAGTAAATC 4402797 32 100.0 33 ................................ AAAAAACAGTGAGCGGAATCAGAAAGCAAGCCG 4402862 32 100.0 35 ................................ AATGATGGAGCAATATAAACACGCAACCAATTATA 4402929 32 100.0 33 ................................ ACTTCTTTTTCTTCAAAGGTGACCGTTTTGAAA 4402994 32 100.0 35 ................................ AATATCCACGAATTAGGTTATACTTGACGTATCTG 4403061 32 100.0 38 ................................ TCGCAATCCGTGGAATCCAGTGGGAATCAGAAGAAGCC 4403131 32 100.0 36 ................................ AATATTAAGACCATGTAATTGATTAACATGTTTGAT 4403199 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 4403268 32 100.0 33 ................................ ATCTTGATTAAGATACAAACTATCAATTGTGTA 4403333 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 4403402 32 100.0 33 ................................ CTCACCGGCCCCTAGCGTCAGTTCGTTCCAGCG 4403467 32 100.0 34 ................................ ACAACATATCCTGATCAAGCGCGTTTAGTAACCT 4403533 32 100.0 35 ................................ ATTTTAATTTTCCGTTCCCCTCGTGTTGTTATCGT 4403600 32 100.0 39 ................................ AGATGCGGTGATCGTTACGCGAGTACGTAATTTGGTCAC 4403671 32 100.0 34 ................................ ATACGGCAATGAATATGGGCCTCAACAAGTTCTA 4403737 32 100.0 35 ................................ GCTGAACTCGATATCCATATCTGGAGATAACTCTT 4403804 32 100.0 33 ................................ GGCGATCAAATGGAACCCGGGGAAACAATTAGA 4403869 32 100.0 34 ................................ AACCATGTAAACGACGACTTTGCCGTGTATTCTT 4403935 32 100.0 37 ................................ CTCAACGCTTCCAGCAAAAATAAACCCGGTATTGCCA 4404004 32 100.0 36 ................................ ATCTCTCTATCATGGAAAAAAATAGACGAATAAAGG 4404072 32 100.0 33 ................................ ACACTGTCCGTCAGAAAAAACCGACTGTTCCAC 4404137 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 25 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATCTCCCTAAAGTTTCCAAAATGCTGGCTGCACATGTAAATTGTGAAGATTTCACGGAAGAAGTTATTGCCAAAGGGCTTGATGAGAGGACATTTGGATTGTGGAATTTTCCTTTCCCTTAAAGGTAAATATGCCATGACGTCTCGCGCTAGTAATGGAAGACGATATAGGGTATTATGGAAGTGAAAAAGAGTAGGTACTTTTATAATTGAACGTTACTGATACATCATAAAAAGTGATAGGGAAGATATATGTTTATCAAACATTATCCAGGTAACGAGTATATAAAGAAGCAATGATTTGGAAAGGTTTATTTTTTTCTGGTGCGAATGTATAGTTCACATGAATATCCCGGGAGATTCGCACCATTATTTTACCAAAAATATGCATGCATTTGGGTTAAGTATATTTGATTGCAATAAATTTGAATAAAAAAGTCATTAAATTGAATGATTTAATCAAAATACGTTCAATTTTGATTGTTTTATTCAAATTTCGCT # Right flank : TTTAGAACGGCCATTTCTGTTTTTAAATGGGCCAACATAGGACAGATGAGGGAAAACCTGCTAGGAGTGAAAATTAGTTAGCAAAAAATCGTGGAAGGAAACTCAATGTTGAACCAGTGACCGGATTAGCCCGTATGCTTCATGACATGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 4404815-4405384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019794.1 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4404815 32 100.0 35 ................................ CAGAAGTACCCCTTGGGACATATGATGTGAAGATT 4404882 32 100.0 35 ................................ GTGAACAGACCTCATGATGACCAATAAATGATTAC 4404949 32 100.0 34 ................................ CATTTTAGTAACAAAACTGGAATAGCTTTCGATA 4405015 32 100.0 33 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTT 4405080 32 100.0 34 ................................ TTTCGTAATGTAAGTTTCATGTTTTCCAGACAAA 4405146 32 100.0 38 ................................ GTCAATATGGGATCGATAAATTTGGAGCGAATTGATAA 4405216 32 100.0 35 ................................ GAATTTGTAAAAGTTCTACAAGATGAAGATATTAC 4405283 32 100.0 38 ................................ ACCACAATATTTTTTAGGCCATTCCAAATGCCCTTGAC 4405353 32 90.6 0 ........A.........A............C | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.0 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : TGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGG # Right flank : CCTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGATCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTGTAAAAATTACTCCCTATTAATTGATCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //