Array 1 1547968-1544543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018839.1 Thauera chlorobenzoica strain 3CB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1547967 30 100.0 36 .............................. AAGTGCACCGGCGATGCCGTTCAGTGCGCGATTGGT 1547901 30 100.0 37 .............................. ATACGTGGCGGGCTGCGGTGAAACAGGCTGGACAAGT 1547834 30 100.0 36 .............................. AGACGCTGAACACCGATCGCATTTACTCGCATGAGT 1547768 30 100.0 38 .............................. GGTACTCGCTGGCGTGAAGGCACGGTTGCTGAGTGGGT 1547700 30 100.0 35 .............................. ACCGTCATGGAGTGCATCGAGCGCTGGGCGAAGGT 1547635 30 100.0 36 .............................. TTTGAATATCAGCAGGATTGGTTGCGGTGCTGAGGT 1547569 30 100.0 38 .............................. GCCGATGTCGGCGCGGCCGGCGCCAGCGCCCTGCAGGT 1547501 30 100.0 37 .............................. GATCAGCACGACCACCGCCGAGTCGATCCGCGAGAGT 1547434 30 100.0 36 .............................. ACGTACACGGGCAACGGGTGCGGCCCCGAGGGGAGT 1547368 30 100.0 35 .............................. CATGCGCCTCGGCGATCTTCCGCGCCAGGGTGGGT 1547303 30 100.0 36 .............................. ACGCGGGCGGCGCCACATGGTGACTGTCGAACCCGT 1547237 30 100.0 37 .............................. TGGAGATACGAAATGCCCTCTCTTCCGAAAGGCAGGT 1547170 30 100.0 38 .............................. TTCAAGAAGTGGCAAACGCTCGGGGCGGCGTACAAGGT 1547102 30 100.0 37 .............................. GATAGATCCTCTTCGGGGATAGCCGTAGGCGGCTGGT 1547035 30 100.0 36 .............................. TCTCCCCCTGCTGCGACTGGCTCACGATCCGCCAGT 1546969 30 100.0 38 .............................. AAGAATCGGATTGAGCTGGCTAAACGGCAGCACAATGT 1546901 30 100.0 38 .............................. TCTCGTTAATGCCTCAAAGGCCACTCCGACTAAATGGT 1546833 30 100.0 36 .............................. ATCACGCTGTCGGCACTAACGATGACCATCCCGCGT 1546767 30 100.0 35 .............................. TTGAGCGTCAGCGCGGCAATATCGAGCCCAATCGT 1546702 30 100.0 37 .............................. CCCACGTCTCGGTCGTATTGACCGGGCCGACCATCGT 1546635 30 100.0 37 .............................. GTGCTGAACAATGCCGCCCCGAAGCAGCCCGCATCGT 1546568 30 100.0 36 .............................. CTCGCCCGGCCACTACGAAGAGGTCATCGACTACGT 1546502 30 100.0 36 .............................. ACGAAGACGCCTTCGACCGCCTCGCCGACCTCTAGT 1546436 30 100.0 35 .............................. ACGCACGAACTGATGCCGTTCACGGAGACAGTCGT 1546371 30 100.0 37 .............................. CCCACGTCTCGGTCGTATTGACCGGGCCGACCATCGT 1546304 30 100.0 37 .............................. GTGCTGAACAATGCCGCCCCGAAGCAGCCCGCATCGT 1546237 30 100.0 36 .............................. CTCGCCCGGCCACTACGAAGAGGTCATCGACTACGT 1546171 30 100.0 36 .............................. ACGAAGACGCCTTCGACCGCCTCGCCGACCTCTAGT 1546105 30 100.0 35 .............................. ACGCACGAACTGATGCCGTTCACGGAGACAGTCGT 1546040 30 100.0 37 .............................. ACCATCGTCTGCGGCCTCGTTACGTTGCTCGACGGGT 1545973 30 100.0 36 .............................. AGCCCCGTGCTGCGCCTGTCGACGCGCGGGGATGGT 1545907 30 100.0 37 .............................. AGCCGGCTGAGTTTCACCAACGCGGTGGCCGATCCGT 1545840 30 100.0 36 .............................. ACCGTCATGGAGTGCATCGAGCGCTGGGCGAAGGGT 1545774 30 100.0 38 .............................. TCGAATCCGCCCTGTGCGGCGCCATTGCGCTGGCCGGT 1545706 30 100.0 36 .............................. GTCATCGTCCCGCCCGGCTTTCGCACCGATCTGGGT 1545640 30 100.0 35 .............................. GGTTTCGTAGGACAGCACCGGGGTGACGCCCTGGT 1545575 30 100.0 35 .............................. CCCATCAGGCTTTTGGGCACCCAGTCGTGCCGCGT 1545510 30 100.0 35 .............................. AAGAAGGGCCAGATGTCGCACACCTGGCGGCCGGT 1545445 30 100.0 37 .............................. CACCTCACCCCCCCGACCGACAACCCCCTGCCGGAGT 1545378 30 100.0 36 .............................. ATGCGCGGTCATGGGCGGCACTGGTGCATGTGCGGT 1545312 30 100.0 38 .............................. ATGCCTCACCCCGCAGAATCGCCCGGGCATCGTCGGGT 1545244 30 100.0 37 .............................. ACCAATGTTACGCGATGGTCCGGACGGCATACCGTGT 1545177 30 100.0 35 .............................. TTCGACACCCTGCGCGAGATCCGCCGCGGCCAGGT 1545112 30 100.0 38 .............................. TCGAAGGAGATGCCCGGCCGGTACGACCGCTTTGAGGT 1545044 30 100.0 36 .............................. ATGCGCGGTCATGGGCGGCACTGGTGCATGTGCGGT 1544978 30 100.0 38 .............................. ATGCCTCACCCCGCAGAATCGCCCGGGCATCGTCGGGT 1544910 30 100.0 37 .............................. ACCAATGTTACGCGATGGTCCGGACGGCATACCGTGT 1544843 30 100.0 39 .............................. GATGATGGTGGTCAGCAGGTCTCCGCAGACGCGGATGGT 1544774 30 100.0 38 .............................. GATCCGAGCGCGGAGACCGGCGGCCCGTTCCAGGTCGT 1544706 30 100.0 38 .............................. ACGCCCTGGGCGTCTCCGAAACCGATCGTTTGCCGGGT 1544638 30 100.0 36 .............................. GAGCCCACCGACCCGCAGTACCAGTGCACCGTGAGT 1544572 30 83.3 0 .C........G........C...C.A.... | ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.7 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : TAGGGCACCCACATGATGGTGCTGGTAAGTTACGACGTCAGCACCCGGGAGACGGGTGGAGACCGGCGCCTACGCCGGGTGGCCAAAGCATGCCGAGACTATGGCCAGCGGGTGCAATACTCGGTGTTTGAGATCGAGGTCGATCCAGCTCAGTGGGTCATGCTCAAGCAAAGGCTGATCGACCTGATCGATCCTGTCCAGGACAGCCTGCGTTTTTACTATCTCGGCAAGCACTGGCAAGCTCGGATCGAGCACATCGGCGCCAAGGCTGTACTGGATCTCAACAGCCCACTGATCTTATGACCGATCCAAGATGCCAAGTGCGAACCTGAAGCTCCCTGCAAATTTCCGGTCCATTCGCGCTTGTCTTATGAGTTTGATCTAGAACGGTTTCGACTGTGATGTCGAGATTGCAGAAGATGTGCTGAGACCCATTTATGGGCAGCTCGCCGAAATAGCCAGAATTACGCTATAAATTCAGCATGTTACATTGACGCGGT # Right flank : TTGCTCGGGTGCACGACATCACCACCGTCGTTGCTGTCAGCCACCTTGTTGTCGCCTCTGCCAACCTATCCCATCTGCACGCTGGGACCGCTTTTCATCCCCCGCCAATGCACGACTTCGAGGCGGCCGTCGAAGTGTTCGACGACCGCGCTGCACGAGTCGACCCAGTCGCCACAGTTCAGATAGCGGACCTTGCCGATCCGGCGGTCGGAGGCCCAGTGGATGTGGCCGCAGATCACCCCATCCACGCCACGCAACTGAGCGGCGTGCGCCATGCTGTCCTCGAAGTCGAAGATGAAGCCCACCGCCTTCTTCACTTTCTGCTTCGCGTACCCGGCCAGCGACCAGTAGCCCGGCATGTGCAGCAGCCGACGTGCCCGCGACAGCAGATGGTTGAGCCGGACCAGGGCGTTGTAGGCGACATCGCCGAGCACCGCCACCCAGCGGTGGTGACGCGTGACCTGGTCGTATTCGTCACCGTGGATCAGCCAGTAGCGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1933401-1935563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018839.1 Thauera chlorobenzoica strain 3CB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1933401 28 100.0 33 ............................ TCGAAGCTGCGGCGACTCCGATCGCTGCCATCG 1933462 28 100.0 33 ............................ CGATTGATCCGCTCGGCGCTGTGGTTTGCGGTC 1933523 28 100.0 33 ............................ CGTCTTGTCGCCGCCGACCGGTAGCGCCCAGGT 1933584 28 100.0 33 ............................ CTTGAGATCCTGCTTCAGCTGGCGGATGCGCTC 1933645 28 100.0 33 ............................ TCCCGATTGACCGCCAGCACGTCGGCGAAGAGA 1933706 28 100.0 33 ............................ CGAAGTCATGTATCCATTCGGCTTGCGGTGCAG 1933767 28 100.0 33 ............................ TACCTCTCCAGCGTCAGCGGTGCCGCTCTTCAG 1933828 28 100.0 33 ............................ CACATCACGAAGCCGAGCAAGCAGTGACTTGGC 1933889 28 100.0 33 ............................ TGGACTACATCGTGCCCGGACTGGGCGGATCGG 1933950 28 100.0 33 ............................ CTACACGCTCAACGCCAAGGGCGGCTCGATCGA 1934011 28 100.0 33 ............................ CTTTTTCGACACAAGTAGGTTACTGTTCCGGCG 1934072 28 100.0 33 ............................ CATCGGATGCTGGGTGATCAGGTAGATATCGAA 1934133 28 100.0 33 ............................ CGCCTACGGGCGGTGCATCGTATGTACCCGGCG 1934194 28 100.0 33 ............................ CTTCACGTCGACGCCGTCGCCGAGCTTGCCAGG 1934255 28 100.0 33 ............................ CACGACAAGCGGCGTTTGCATGATGGGCTGCTG 1934316 28 100.0 33 ............................ GAGGTCACGAACCGGGGGACGCTCTCGAAGTCC 1934377 28 100.0 33 ............................ CCCGTCAGTCAAGCGGACGCGATGGAGCCGCGC 1934438 28 100.0 33 ............................ CTGCGCCGCCTGGCCGGGCTGGGCCAGATCGAG 1934499 28 100.0 33 ............................ CGACACGCCGCTCCCAATCAACGCGACGGTGAC 1934560 28 100.0 33 ............................ CAAGCACCACAGTACAGCGCCGGAATTCGGCAC 1934621 28 100.0 33 ............................ CGGGTTGAGTGCGGTGACGTTGCTCATGGTGTC 1934682 28 100.0 33 ............................ CGCGCCCTCTTCGCCCTGCCAGTCGGCGGCAAG 1934743 28 100.0 33 ............................ CGTCTGGCGCCGATCGGGCGGCCCGGAGATGCC 1934804 28 100.0 33 ............................ TGACCAGCCGTGCGATACGGCGAAAGAGACCGA 1934865 28 100.0 33 ............................ CGCATGGTCGGCGTAGGCGATGAGACGGAACTG 1934926 28 100.0 33 ............................ CATCCCCGCCGGGCATATCGACGAATTCCCCCG 1934987 28 100.0 33 ............................ TCCAGCATTGCGCTGCCAGGCATTCAGAGCAAG 1935048 28 100.0 33 ............................ CGGATGTGTTCGTTCGCGCAGGGCCGCCATCCG 1935109 28 100.0 33 ............................ TCAAACATGCCGCCGAGCAGGTCGCGCTCTGTG 1935170 28 100.0 33 ............................ TCCACCGAGGGGACGAGGTTCATCTTGATCACC 1935231 28 100.0 33 ............................ CGACCTTAGTCACTTCGTCGTAAACCTCAGCAG 1935292 28 100.0 33 ............................ TAAGGCTTGGTGTCGGTGCTAGATTGCTCGGAC 1935353 28 100.0 33 ............................ CGACCACGAAGGATCAGGCCGGGAACACGATTT 1935414 28 100.0 33 ............................ TGTGCCGCGCTTTTCCAAGCGATGCAGCAGGAA 1935475 28 100.0 33 ............................ CCCATAAAGTGCTTTACACACGCGCCAAATGAG 1935536 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : TGTACAAGGAGACATTGTGTATCGATCTGGCCTTTTCGCTCACCCGGGACCTGGCCGGCCGCTACGACAAGCACAAAGTATCGGCAGCGTTCCGTCAGCGGGTGATCGAAACGGAGCTGCTGGCCAGGGTCGGAGAAGACATCCAGGACATGTTCGGAGTGAGCCATGCTTGTCGTCGTCGCAAATGACCTGCCGCCCGCCGTGCGAGGAAGGATGAAGCTTTGGTTCATCGAGCCGCGGCCCAATGTGTTCGTCTCCGGAGTCAAGGACTCGGTGGCCACCACGGTCATCGAGTACCTGTACAAGCATTGCCCGCCCGAGTCGGGGCTGGTGATGTTCCGCTCCCTGCCACGGCCTCCCGGCTACGAGATCAGAACCATAGGCCCGCCCCGAAAGCCGATGACGAGTATCTCGGGTCTGCAACTGGTTATGGAAACCCTTGCATCGGCGTAATTGGCATATCTTGTATCTGCAGCCGGGCTCATTAACAATCTGTTGGT # Right flank : CCAAGGTAAGCGGTAACTGCCCGGCGTCCTTGCCTACTTCGAGATTTCGAAGAGATCGGATCGCAGCGGATTGGCCGCGAAGTGTTGCTTCCACAGCCTTGGGGTGAGCTGCGCCACGTTGGCGGCCGGATGCTGGCCGATGCGCTGGAGCACATCGACCAGGTACGTATAGGGGTCGATGTCGTGCAGGCGGCAGGTGGCGATCAGACTCTGCGCGATGCCCACGTACTTTGCCCCGACCTCGGTCCAGCAGAAGAGCCAGTTGCGACGGCCCATCGGCACCACGCGTAGCGCCCGCTCCAGATGGTTGGTGTCGATCGGCACCTCGGGATCGGAGAGGTACACCTCGAGGGCGGCCCGGCGCTCGCGCACGTACGCCATGGCGGTGGTGAGCGGTGAGCTGGGCAACAGGCCCTGGGATTCGAACTGGGCGTCGACCCAGGCGAAGAACTGCTGGAGCACGGGCTTGGCCTGCGCGAGCCGATGCGCGCGGCGTGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1938038-1939164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018839.1 Thauera chlorobenzoica strain 3CB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1938038 28 100.0 33 ............................ CCCCCAGTCGTTACCTGCCGGTTCGCTCTTCAT 1938099 28 100.0 33 ............................ GTTACCTGGGCGCACTATGTCAAATAAGAATCG 1938160 28 100.0 33 ............................ CGAGGCGACTATCGTGGCCCTTGCCCTTCCGGG 1938221 28 100.0 33 ............................ CGGGATGCTGGATCGTGATCGAGCCACAAGGCG 1938282 28 100.0 33 ............................ CCCTAGCCCCGCTCTTTCGCCAGCAATGGCGCT 1938343 28 100.0 33 ............................ CGACATGCGCACGCCACGGCACCATGCGCCGTA 1938404 28 100.0 33 ............................ CGACATGCGCACGCCACGGCACCATGCGCCGTA 1938465 28 100.0 33 ............................ CGCGTTCTGATCGTGTGACGTTGAATAGCGGTC 1938526 28 100.0 33 ............................ TACCGAGTTCTGGGTGCGCTTCGAGGGCCTCAA 1938587 28 100.0 33 ............................ CCATGACGCCCGCCGACCCTATCGCGGAACTGG 1938648 28 100.0 33 ............................ TTCCCATCTCGTGCTGAAGAGCTGCCGTGATGA 1938709 28 100.0 34 ............................ CGCGCTTCGCCGGCAAGGCTACTCGGTCGATTGG 1938771 28 100.0 33 ............................ CAAAAGCGCCTCGCCACCGACTTCATCGACCGC 1938832 28 100.0 33 ............................ CGAAGTTATCGACCTCCCCGCCCAAACCGGCAC 1938893 28 100.0 33 ............................ CGCCGCCTGCGCCGCCTGTACGAATCCGTTGAA 1938954 28 100.0 33 ............................ GCCGGTGGTGGCGGATGGGGCGGCCTTCCCTGT 1939015 28 100.0 33 ............................ CGGTAAGTAGCTGGGCTGTTTGCATCGGCGGAA 1939076 28 100.0 33 ............................ CCTCGTCCCAGTCCCAGGTCAGGTGCTCTTCGA 1939137 28 71.4 0 ..................T.TCACCGA. | ========== ====== ====== ====== ============================ ================================== ================== 19 28 98.5 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : ACTTGCGCATGTCAACCGGGCGGCCATAGACATGCACCCGCACCGCCCCTTCGGGGAAGAACATCAGCCGCGCACCAGATGCAGCACGACACCGCCACCCAGATCGAGCTTGAGCTCGAGCCGGCCTGCACCGCCGCCAACGTCGACCAGGCCCGCATCGACAAAGCCCGCACGAGCGCACGCATCGCCGCGATCGGCGACGCTCGACGCCTCACCGGCCAGCAGGCCGCGCCAGCGCTCGAAACTCGACTTGCTCAAGCCCTCGCTGTCGCAGAACTGCCGGATGCTCAGACCGCTTGCCGCAAAGCGATCGAACACCGCCCGCCATTCCTCGTGGCCGCGTCGCCGCCATTTGCTCCTCACCGTCGATGCCATCACTGCCAATCCCGTCGTCGTTGAACATGGCGAGAATTATTCAACGATCGCTACGCCGCGAGAAGGACGCCGCTCAGTTACCGGTTACTTTCCAAGGGCGCGAATCCGGCGAAAAGCTGCGATCC # Right flank : CCGGCACATTGGAGCCAGTTGGTGATCGGCACAATAGGGCCACCGTGTGATCGGCACATTGAGGCCACCTCCGGATCGGCACATTGGAGCCAGCGCCGGATCGGCATAATGAGGCCAGTTTTGTTCTGACGGACGTCTCGAACTTGAGCGCGCCATGGCTACCCTTCAGCCTTTTTGTTCGGCAGGAGGGAGGCGATGGCCCGCAGGAGCATCGAGATGTACGAGTACCGCCAGGCCCTGATGCGCATGCGCCAGGGCGACTCCGAGCGCGAGATCGCGCGCTCGAAACTGATGGGTCGCACCAAGGCGGCCCGGTTCCGGGCGTTGGCCCAGCTTCAGGGCTGGCTCGACCCCGAGCGCCCCCTGCCCGAGGACGCCGAGATCGCCGCTGCGCTCGGGCAACCGAAGCTGCCGGCGACGGCCCGGTCTTCGATTGCCGTGTACCGGCCGCTGGTCGAGCAGTGGCACGCGCAGGGGGTGTCCGGCGTGGTGATCCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1941873-1942822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018839.1 Thauera chlorobenzoica strain 3CB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 1941873 28 100.0 42 ............................ CATCATGACCACCACCACCACCACCACCACCACCACCACCAC 1941943 28 100.0 33 ............................ CGATGACGCTCATCGCCACGGTCCCCGGATGTC 1942004 28 100.0 33 ............................ TGCTTACGTCAGCTACATCCCGTTTGACATCCG 1942065 28 100.0 33 ............................ GAACAAGCGCGGGCTGGCTGTGCTCGTCATCGA 1942126 28 100.0 33 ............................ TGAACGTCACGAACCGCATCACGCACGACTGCC 1942187 28 100.0 33 ............................ TCTCCTGCGTGGTGATCGTGCTGACCAGCTGGC 1942248 28 100.0 33 ............................ CACTGGCAAACGCGCCATTGTGGCGCGGTGAAG 1942309 28 100.0 33 ............................ TCCTTCCGCCCGAAGGCAGCGCTGGCATCCGCC 1942370 28 100.0 33 ............................ TCATCAAAACCGCCGCACCCCAAAAGACCGCAT 1942431 28 100.0 33 ............................ TGTCGTAGCCCTGCCCTTCCATGTCATCGGCGG 1942492 28 100.0 33 ............................ CCGCCCACGACAGATTCACGGTTATACCAGCAG 1942553 28 100.0 33 ............................ CGATGCGTTGCGGCATCGGCCAGGACAGATAGA 1942614 28 100.0 33 ............................ CGACCGGCTCGGCGCCACCTCGCGCAGCGCCTA 1942675 28 100.0 33 ............................ TAGGCCCGCGCTTGTCGGCTTGCTCTGGTGAAT 1942736 28 100.0 33 ............................ CAAGCGCGCGATTGCCAATCTGTGCGGGTGCTC 1942797 26 85.7 0 ..........-A....-..T........ | ========== ====== ====== ====== ============================ ========================================== ================== 16 28 99.1 34 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : CAGCCTGAACGCCGCGCGGGCGGTCGGCACCTACGACCGAAAGCTGCAGCAACTGGCCCGCGTTCCGGTGCTCATCATCGACGACTTCGGCCTCAAGCCCCTGCGCGCGCCCGCCGACGAGGATCTGCACGATCTCATCGCCGAGCGCTACGAGCGCGCCGCCACCATCGTCACCAGCAACCTCGACTTCACCGAGTGGGACCAGGCGTTCCCGGGCAACCGGCTGCTGGCTTCGGCCACCGTCGATCGACTGCGCCACAACGCCTACTGCCTCACCCTCGACGGCGCCTCCTACCGCGCGCCGCGGCAGGGGCCAGGCCGGGCGAAAAACGCTCTTGCCGGCACCCCGAAGAACATCCATTCTTGACCCCCCCAACGACGTCCGTCAGAGCCCCATTCACGTGGCTTCTATATGCCGATCATCGGTGGCCCTATTGTGCCGGTCAGTGACACCGTGGGGGTGTTTCTACTTACCCGATGCGCTACCAGATGTTTAGCTC # Right flank : CTACGGCGGAGTTCGAGCTTACCTCGGAGGACGGTTCCGATGCGAGCTAGGGGTTGGCGTTTTTCAACTTCAGCGCCCGAAATTCGGCACTTTGTGAATGAATTTCGAGTGTCGTGAAGATTTTTCGAGTCCAGCGGGCGAGGGGGCGGATACGAACATCGGGTTGCCAGGATCGGTCTTGTCCGCACGGATGAGATTGAGCACAGCCTTCTTGAGCAGCGAGAGGTTCTGCGGTGCGTTGTCCTTGCGGATCATGCAGTCGTTGTCAATGTCGATTTAAAGCTGCACGACGCCGCTCGCCTGCGCCTTCTCGTCGCTATAGGCCCGTACCCGCCCCGCGCGGCTTGCCGTACCAGCGGAAGCGCTCGGTCACCTCGGCCATTTCCGCCGCCGACAGCAGTACCGGGCTGCCGAGCTGGAGGGTGCGCCAGTACTGCTCGCACAGGGTTTCGAATTCGATCGCCAGCGCCAGCGCATGGGTCAGGTCGCGGCCGAACACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //