Array 1 12828-11866 **** Predicted by CRISPRDetect 2.4 *** >NZ_AECM01000019.1 Finegoldia magna ACS-171-V-Col3 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12827 36 100.0 30 .................................... GTATAAATCAGCTAACATTTGCATAGTTGG 12761 36 100.0 30 .................................... AATTAGAAAATTCATACCATTACATTTTAA 12695 36 100.0 30 .................................... AGGACAAAGAACCTGCGGTGCTTGAACTTA 12629 36 100.0 30 .................................... AAGAACGTGTTTCTAACGAACAAACTAGAG 12563 36 100.0 30 .................................... TGCTATATAATCTGAAATCTCTTTTTCAGT 12497 36 100.0 30 .................................... AATTAGAACAGAATATTTTCAGAAATCAAT 12431 36 100.0 31 .................................... TGTGAACATTGAGGATTTGCAACTATGATGA 12364 36 100.0 30 .................................... CACTCTCTGTAGTTGTATTCAAATGTTTTA 12298 36 100.0 30 .................................... CACGGGGGTATTTTTTTATTATCTTTTTGC 12232 36 100.0 30 .................................... TGGTACTGAGAGATAAGTTCGGATTTGGGA 12166 36 100.0 30 .................................... TGTCGATAAAGAAACAATCAAACATCAAAT 12100 36 100.0 31 .................................... TTTATAGAAGATTTTAACAGGTACTATTATG 12033 36 100.0 30 .................................... TGTTACGTTTAGTAGAAACAACATGCCGCC 11967 36 100.0 30 .................................... CTTTTGTCTCTTTCGTTATTTGCTCAATCA 11901 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.8 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : ACAAGAAAATCACTACAAAAATTATAAAAGATTTAATAGAAATTATCTCAGATGAAAAACATTACGAACAAAAAATAAATTTAAACTCATCAATTGTTAATTTTATTAACGACATTACACTAGATTATCCGTATATGTTAGAAATCGGTGATGAAATAAATTTTGAATCATTATTAAAAGTAGTTCCAATTAAACCAAGTGTAGATTACACAGATTTCCTGGATAAATTTGTTTCTTTTTTAGACATTTACCAAAATGTTTTGAAGATAGATGTATTCTACACAATAAACTTATTGCAGTATTTTACAGAAGAAGAGCTCAAAGAATTATCTGATTACATTAAAATTAAGAACATTTGCATAATAAATTATGATAATATATTAGTAGATAGCAATTACATTTCCAAAAAATTGCTGTTTGATAATGATTTATGCAGAGTTTTATAATTATCTATATAAAATTACCACTTTGATGGAGTGATTCTACCTCATGGATTTGAG # Right flank : GGAAATTGAGGAAAATAATTTATTGGAATTATTCGTGAAATCAACAAGATCAGGGGTAAAGAAAGATGTTTTAATCATAATATATGAATTAAAAGAAGAAAAGAAAGAACTCATGGACTAATAACAAGAGACACAATCTTGAGAGTTGATATAAAAAATCATTTAACAATATTTATGATATAATTATAGCGATTAAGAGGTCAAAGAGGTGTTTTGTATGAATAACAAAAACAACATAGATAGAGTTCATGATGATGTTTTTAATAGCATCAAAATATTGATGGATAAGGCAAGAAATGAAGTTGCAAGAGAAGTCAATAATATTTTGGTGCAAACTTACTGGGAGATTGGACGTATCATTGTAGAAGATGAGCAAGGTCATTCAGAAAGAGCAGAGTATGGTAAAGAATTGCTTAAAGATTTATCTAAGAGATTAACTAAAGAATATGGGCGAGGATTTTCAGTATCAAACTTGCAATTTATGAGGAGATTTTTTCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 29992-28319 **** Predicted by CRISPRDetect 2.4 *** >NZ_AECM01000022.1 Finegoldia magna ACS-171-V-Col3 contig00024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29991 30 100.0 37 .............................. AATAGCTCATCAAACGACTTTGAAAAAGATATGAACG 29924 30 100.0 35 .............................. ACGGTTAGGTCATTGAAGTCTGACAAGGTCAATCC 29859 30 100.0 35 .............................. CTTACAAGGTCATTCACTTACTTTTCATGGCCGTT 29794 30 100.0 36 .............................. ATCGGAGCATACTTGACTGTGTCTACTGCGAAAGCA 29728 30 100.0 36 .............................. GTGAGCTATCCAAATATCGTATTTCTTGATACGTTC 29662 30 100.0 35 .............................. TATTTAGCTTTGTTATAAGGAATCGCTCCTTGAAG 29597 30 100.0 36 .............................. TAAGTTGTAAACTTAGTTTCTTTATTTTCAACTCTG 29531 30 100.0 37 .............................. AAAAAAGTTTTATCAAGCGTATTATTTAAATTTTTAA 29464 30 100.0 36 .............................. GGGGAAGTTACTTCAATTGCAAGTAAGTTAATCCAA 29398 30 100.0 36 .............................. TTGGTAGTGTGTCAATATCCACAACATAATCATTAT 29332 30 100.0 34 .............................. AAATTTGATTTAGCTATAAAAGGTTATCATATGA 29268 30 96.7 38 ...........A.................. ATTGGAGCGACACTCACTGTGGATACTGCGAAAGCAAA 29200 30 83.3 38 ...........AC..G.G..G......... TCTTGAAAACCTAGTTTCTATCATGAGATAACCACCTC 29132 30 83.3 36 ...........AC..G.G..G......... ATGTTCTTAGTTAAGTATCTTCTTGTAGTATCTTTA 29066 30 80.0 34 ...........AC..G.G..G....A.... GTCTCATCCTTAATCGTCTCGATTATGTCTTCAA 29002 30 83.3 37 ...........AC..G.G..G......... TATTGGTTTGCAGAAATGTGTCCGAATTCAAGTAAGT 28935 30 76.7 35 ........A..AC.GG.G..G......... ACATCTATCTTTGTAATTCGATACTTTGTGTTTAT 28870 30 90.0 37 ............C....G..G......... GTTGAACGTAGAAAACTAATTGCTGCAAATATGGAAC 28803 29 90.0 34 ............-....G..G......... AGCCTAAATGTTATATTTCTATGATTATCTTCAA 28740 30 100.0 35 .............................. CCTTTTGCCATAGTTTTCCAACAGTGAGCATGTAC 28675 30 80.0 36 G..........AC..G.G..G......... TTTCTTGAAAAGCTGGTTCCTTTATCTGAAACTATC 28609 30 83.3 37 ...........AC..G.G..G......... GCGTACGCTAATACGGGTGTAGAAGCAAGGGAAAAGC 28542 29 86.7 35 .............-.G.G..G......... ATTCAAAAGACTGAATCATACAAGGACAAGGTCGT A [28532] 28477 30 86.7 35 ...........AC....G..G......... ATTCATACGATTTTTACAATCTTGCCAGTCACGTG 28412 30 100.0 34 .............................. ATTATATTAACTCAGAAGTTAAACACGATATTAT 28348 29 80.0 0 .............-.G.G..G....A...G | A [28337] ========== ====== ====== ====== ============================== ====================================== ================== 26 30 92.3 36 ATTAAAATCTACTCATACTGAAATGTAAAT # Left flank : TAATTGGAGAAAAAGAATACGAACCGTTTATAATTTGGTGGTAAAATGTATATAATTTTAGTGTATGATATTTCAAATGAAAATAATGGACAACGAAGGTGGAACAGAGTATTTAAGATATGCAAACAATACTTAAACCATATACAAAACTCCGTGTTCGAAGGAGAAATTTTAGAATCAGACTTGTTTAAATTGAAAAAGAAAATTCAAAAAGAACTCGATGAGACAATAGATTCAGTAATAATATTTAAAAGTCGAAACGAAAGATGGCTTGAAAAAGATATACTGGGAACAGAAATTGAAGATCCACAATTCATATAATACAATTGTCGAACTGGTATAAATGTAAATTACAAGGACATCGACAACGGCTAAAATCACACATTTTTTGTGTTAGATTGAATTATTTTCAAAAAAATCGTAAATTTGATATACTTAAAAAGAACATAGACAGAAACAAGGTCTGTAAGTGTTGAAAATACTCTTGCAGACAGATACCT # Right flank : AATGTTTGATGATAATCAAGTTACTAAAGGCTCATTTACCATAAAAAATAAAACACTTGTTGATTTTCTCTAAGTTAACACCATTAAAAAAGGCTATGAGTTCACACTCACAGCCTTTATTTTTCGTGTTGTTTGATTATATTTTCTAATCTATTGTATTCTTTTTTAAATCTCGGGTTTGTGGATTTGCTTTTCAAATCGTTTAAGTTTTTTCTTGCTGACACAAAATCATCGTCGAATATGTTTTTCATTATATACAATTGTTTGATGTTTTCGCCGTAATTTGGACTATTTTCAAATTGTTTTAAAAGATTTTCGTGTGTTGTGAATAGTTCATTAAACTTATTTCGCTCGTTCAATTTGAAGTGGGCGATCATTGTATTGAGCCAATATATCAATTGAAGGTCTTGGTTTTTTAACTGGTCTGCTTCAATTGTTTCATAAGTTGACAATGTTTTATTTGGTTCATTAAGTTCCAAATATCCCGCTCCCAAATTCAT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCTACTCATACTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //