Array 1 1068616-1072502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEGM010000003.1 Clostridium perfringens strain NCTC8678, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1068616 29 100.0 36 ............................. AAGTTTCTATTGCTTTACATACTGAATTATCTTCTG 1068681 29 100.0 36 ............................. TCTTTCGGCTTTTCGTTTCCAAAATAAACCGATTTA 1068746 29 100.0 36 ............................. AATTTTAAAAAAATTAGCTTTAGCATCATCATCTAT 1068811 29 100.0 36 ............................. TTTTCACTTGAAATTACATTTGTTATAGGTAATTCA 1068876 29 100.0 35 ............................. AAAAAAGCTGAAAACTATAGAAAAAATGCAGTTAG 1068940 29 100.0 36 ............................. GGCACTAACATAAAGGAACATTTAAGGGTTTATACA 1069005 29 100.0 36 ............................. TGTTAATCTATTTTCTGATATAGGAAGTTTATTAAG 1069070 29 100.0 37 ............................. TCATTCGTTTCATTTGATTCTAGTCCAAAGTTATTGG 1069136 29 100.0 36 ............................. AGGAGTTTTGGATTAATCAACAAAGGATAGCAGATG 1069201 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 1069267 29 100.0 37 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTAC 1069333 29 100.0 36 ............................. AATGGTATATATGAAAGTTTTAATCAAGATGACCAA 1069398 29 100.0 36 ............................. TACTTTAAAGTTTCTTCTCTATAAGGTATCTTTTTC 1069463 29 100.0 36 ............................. TTAGGAAAAGGACAAAAAGAAGAATTAGAAAGATAC 1069528 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 1069594 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 1069660 29 100.0 37 ............................. TCAATCAAATTTTTACTTTCACAAACTTTTTCATGAG 1069726 29 100.0 36 ............................. CAAAGTAATAATTTTGATTAAAAAAGTTAAAAAAAG 1069791 29 100.0 37 ............................. GATTATGTGGTTAATAAAATTACTAATATTACAGATC 1069857 29 100.0 37 ............................. TGTTGTGATAGATATAAACAATGTGAAGAAATAGAAT 1069923 29 100.0 36 ............................. TCTTTACCTTGTTTAACTTCACTTATTATAGTTCCA 1069988 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 1070054 29 100.0 36 ............................. GTTCAAACTTTTTACCTTCATTAAGCATTACCAACC 1070119 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 1070184 29 100.0 37 ............................. TACAATTCTTGCAACAATCCATAGAACTCAGAATTAG 1070250 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 1070316 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 1070381 29 100.0 37 ............................. GTGTTTCCTTGCTATGCAATAGGAGAACACAAAGGAG 1070447 29 100.0 37 ............................. TTCCTATAGCTGCCTCTTCAAAATAATTTGTCATATC 1070513 29 100.0 37 ............................. TATGAAGAAAACATTAGATTTTTAGAAAAACAATTAA 1070579 29 100.0 36 ............................. TGGTAAAGTGAAGATATAATATATTCTTTTCCTTCT 1070644 29 100.0 35 ............................. CTTATTAATTACTATTCTTCTTCAATTCCAAACTT 1070708 29 100.0 36 ............................. AGCTGTATTTTTAGAGTTAAAGACTTTTATATTACT 1070773 29 100.0 36 ............................. AGGTAAAGCTCCAACATCAGGAGTACTAACAATATC 1070838 29 100.0 37 ............................. TGCAAAAACACATGGTTTATCATAAGTTTTCAAAAGC 1070904 29 100.0 37 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTATG 1070970 29 100.0 36 ............................. AGCATTATTTTAACTTCATCCTCAACTGCAAGTTGA 1071035 29 100.0 37 ............................. TTAACAATAGAAGGACTAACAGCACCAACACTACTAA 1071101 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 1071166 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 1071232 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 1071298 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 1071364 29 100.0 36 ............................. TAAGTAATAATTGAAAAACTACAACTTCATGGAACT 1071429 29 100.0 37 ............................. AGCTTAAATTGTTTTTCTATTATTACTCTATGTGCTC 1071495 29 96.6 37 ............A................ ATTATTAGTTTTTCTCATTCTTCTTATTTGATTTTCG 1071561 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 1071626 29 100.0 36 ............................. TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 1071691 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 1071757 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 1071822 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 1071887 29 100.0 36 ............................. AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 1071952 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 1072018 29 100.0 35 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGA 1072082 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 1072147 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 1072212 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 1072277 29 100.0 36 ............................. GGATCAGGAAAGAGTTTGCACGTGGCACAAGAAATT 1072342 29 100.0 36 ............................. GTAAAATGATCCTTAACGGAACAAGGCACTTTTTCT 1072407 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 1072473 29 86.2 0 .................GAA....C.... | T [1072500] ========== ====== ====== ====== ============================= ===================================== ================== 60 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //