Array 1 64909-63904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDS010000027.1 Escherichia fergusonii strain EF90 90-1-p_(paired)_contig_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64908 29 96.6 32 ............................A GATGGTTCGCCATACTGACTCTGAAACACTGC 64847 29 100.0 32 ............................. AGAAGTGGTCGAATTAATTGATGGACTCACCC 64786 29 100.0 32 ............................. GGATTGCGATTCCCTTTATAAATTCATAAAAA 64725 29 100.0 32 ............................. GATGGGGAATGGCCTATTGATAATGGGATTAT 64664 29 100.0 32 ............................. CGCTGGTTTTAATAGCTGCTCACCCCAGCCCA 64603 29 100.0 32 ............................. GAGTTCGGCCCCGGACGGTCCGGCATAAACTT 64542 29 100.0 32 ............................. CGGATATAGCAAGAGAAGTTGTTAAAACACGA 64481 29 100.0 32 ............................. CGATTACCGTAACCAGATGAGCGCCTTTTTCA 64420 29 100.0 32 ............................. AATGTAACCCGGATAACTGGCAGTGCGCCAAT 64359 29 100.0 32 ............................. CGATTATTTTGGAGTAACTATTTTTCGTGAAA 64298 29 100.0 32 ............................. TATTGAAAAAATTTCCGTTCGCAGCCATTCGG 64237 29 100.0 32 ............................. GAGAAATGATTGCTCCTGTGGACACTTCACTG 64176 29 100.0 32 ............................. CCGCGATTATCGAATGGCAGGGAACTGGCGAC 64115 29 100.0 32 ............................. GTAACAGGGCGATTTCCCGAACGTACCGCCTC 64054 29 100.0 32 ............................. AAATATATCGACAACAGTATGATAGTTAGACG 63993 29 89.7 32 .T...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 63932 28 82.8 0 ............T.........-.CT..C | C [63923] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15856-13570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDS010000004.1 Escherichia fergusonii strain EF90 90-1-p_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15855 29 96.6 32 .....................G....... TTAGTTCAGGAATCTGGTGCGGCGGGCTTTGT 15794 29 96.6 32 .....................G....... CGAGCGATCTGCCATGCAAATTCAGCTAGAAT 15733 29 96.6 32 .....................G....... GCTGATTTTTCCAATTTAACCAGAACGGATGT 15672 29 96.6 32 .....................G....... CGCATGTGGGGCATTTCCACAGTAAACGGGAA 15611 29 96.6 32 .....................G....... CGCTTTCACTGGCGGCAGGTCAGGCAAGAATA 15550 29 96.6 32 .....................G....... CATCAGAAAACACATATAGCCGGTCTGTTAAT 15489 29 96.6 32 .....................G....... CTTACTGTCTGCGTCGATTTATTAAATGGGCT 15428 29 96.6 32 .....................G....... CGTCCTAATCCCCAAAATTGGCCTCATTTGAG 15367 29 96.6 32 .....................G....... CCGGCGCAGATGCAGCCAGTGCCAGCGCAGGT 15306 29 96.6 32 .....................G....... TAGTCTTCACCACGGCGTGGGTGAATCATGTT 15245 29 96.6 32 .....................G....... ATTGGCAAACCCACTCTCATCATCAAATAAGG 15184 29 96.6 32 .....................G....... GCACGGATCGCCGGATAATGCCCGCAGCATCG 15123 29 96.6 32 .....................G....... CCAGGAACGCTGGAGGAATATTTATTAATTGA 15062 29 100.0 32 ............................. AGTCAAACTACGTTAAACAAATTGCCGCTCTT 15001 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 14940 29 100.0 32 ............................. TCGGCGACCAGTGGCGCACTCCTGATCTGCTG 14879 29 100.0 32 ............................. ATTTGCAGGTCCGAATTGTTGACGCAGCGAAA 14818 29 100.0 32 ............................. ATCTGAACGCAATCAAACATGCCGTGGATCCA 14757 29 100.0 32 ............................. TGTATTGCGGCGCGACCACGGAAAAGCAGGCG 14696 29 100.0 32 ............................. CAACTGCACTCGGTCACGTAATTTTCCAGCCT 14635 29 100.0 32 ............................. CATCATTTGTAAAAACAAGCGAGTCATTTGAT 14574 29 100.0 32 ............................. GCGGTATCGGATACATATCTGCCGAACTTGGC 14513 29 100.0 32 ............................. CGCCCCTTCACAAACCAGGATCTCGCTCACTC 14452 29 100.0 32 ............................. AATGGCGACCCCTGGATTTTTACCGGACTTCA 14391 29 100.0 32 ............................. TGACGATGTAATAATTAGAGCAGAATCTAGTT 14330 29 96.6 32 ............................A GAATAACAACAAATCCAGATGCTTTGATAGTG 14269 29 100.0 32 ............................. GTACGAACCGGCAGACTCAAACCGAGTTGATT 14208 29 100.0 32 ............................. CCATTTAACAGAATCAGCAGATGCCTCTTGTT 14147 29 100.0 32 ............................. GGGTTATTGAGGTTTCCACGCGGAAAGTGAAT 14086 29 100.0 32 ............................. TTCTCCCAGTTCGTATTCCTGGTCATGCATCT 14025 29 100.0 32 ............................. CGGGGCTGGTGGTTTTAATTATGCGGCGTTGT 13964 29 100.0 32 ............................. GTGTTATCGCTCGCTCATCTCATATGCGGATT 13903 29 100.0 32 ............................. CGCCGGTTTTAATAGCTGTTCACCCCAGCCCA 13842 29 100.0 32 ............................. ATGGCGCAGGGGTTCGTTCAGTCCAGTGTGCC 13781 29 100.0 32 ............................. CGTGTAGTAACCGTCTGAAGTACGTGGCGCAT 13720 29 96.6 32 .................T........... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 13659 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 13598 29 75.9 0 ........A..T...A.AC.C....T... | ========== ====== ====== ====== ============================= ================================ ================== 38 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGGTTTTAGTGGGTATAGAGTTATCTAAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //