Array 1 1032376-1029690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1032375 37 100.0 39 ..................................... AACAGCAAGCAGACGTCACAGTCTGGTGACCAGACTGGA 1032299 37 100.0 39 ..................................... GAGCAATCGAGGAAGGCCGGAGAACCTCCTTTACCTTTC 1032223 37 100.0 37 ..................................... GAATAGCCCCGAAAATCCCCACTGATTAACTCAGTGG 1032149 37 100.0 36 ..................................... ACAAGGATCGCCGATCGCGCCCTCGTCGGAACGCGA 1032076 37 100.0 35 ..................................... TGGCGGGCGATCGCTGCCGACGAGCGCCTCGCCGA 1032004 37 100.0 34 ..................................... AGTCCTTAGGTCTTACCCAGAGACAGCTATCGGA 1031933 37 100.0 36 ..................................... ATGCCCTCAAGGCTGCGAGAAATGCGACCTGTAGAA 1031860 37 100.0 37 ..................................... TATTACTAATAAGGGTACAAACCCCTAGAGGACTAGA 1031786 37 100.0 37 ..................................... ATTCAATTAAATGATTGTACTTGATGACTTCTTAGGA 1031712 37 100.0 36 ..................................... GAGGTCGGCACCCTCTAAATTGGCACCGCTAAGGTT 1031639 37 100.0 35 ..................................... TCACGGCCTGCAAGAATTTTATCGGGGAGCTACAG 1031567 37 100.0 34 ..................................... CATAGAACCCGAACTATCGATTAGAACGTATAGA 1031496 37 100.0 38 ..................................... GCCTCACTTCAAAACCGAGACCTTACGAGTCAAGGTAT 1031421 37 100.0 36 ..................................... AAGAATTTCTTCAAGGTCCCGACCAGTGCGACTCAG 1031348 37 100.0 40 ..................................... TTGTGAGGAAGTAAACCAGCCGAAAAATGCTTTGATTCGT 1031271 37 100.0 36 ..................................... GAACCGCCTATCGCCCCGCGCCGTACATGTCGGGGC 1031198 37 100.0 37 ..................................... CTAAACCCAGGGGAGTATACAGCCATCCGAACGGGGA 1031124 37 100.0 39 ..................................... TCCCCAAAAATCGCCTATTGGGGGCAATGGGAAGACAAG 1031048 37 100.0 36 ..................................... GCCTCCGCCATCTCTAATTTCGCCCCAGGTGTTGCT 1030975 37 100.0 37 ..................................... CTATATCATTTCCGCGTTCCATTATTATTTCTCTCAA 1030901 37 100.0 34 ..................................... CCTCCTTTGCCTTTTCGCCTGCTTACCTTAGGGG 1030830 37 100.0 37 ..................................... GCTTTAGCCTTGGCGGCAGCTCGAAGCTGGCGGATCT 1030756 37 100.0 36 ..................................... CGAGCCTCTAGCTGCTCCCCGAGGCGGCTATCGAAG 1030683 37 100.0 41 ..................................... GTCCACCCCCGTCCCCGGAGGACGGAATTATACCATTCGAT 1030605 37 100.0 39 ..................................... AACCCCGAGCTTTCTTTGCAGCACTCAATAAATGACGAA 1030529 37 100.0 34 ..................................... ATCGACGAAGGGTATACAGGGGAGATAAAGGTCG 1030458 37 100.0 36 ..................................... CAACTACCAGGTAACGGGCTTTACAGCCACGACGGA 1030385 37 100.0 36 ..................................... GGAAATTTCGAGATTTACACCCCGGAGATTGGCCCC 1030312 37 100.0 37 ..................................... TCGGGAAGCATTTGTTTCCTTGGAGAAGATCCGAGGA 1030238 37 100.0 39 ..................................... GTAGAGAGTGGCGCCATTGAGGTTAGCGCCAATTAGGTT 1030162 37 100.0 38 ..................................... AACACCTTTTAAGCTGGATCCACGCAGGTCGGCGCCGT 1030087 37 100.0 35 ..................................... AATAGCTTTAATAGTCCCATTGCTTTTTTCAAAGG 1030015 37 100.0 35 ..................................... AGGCCGGAGACAGTTCCGATTACTTTCCTTAAAGG 1029943 37 100.0 36 ..................................... CCCCCCGGTAGGGATGAGGTAATCCCCATCCGAATC 1029870 37 100.0 34 ..................................... TTTACGGCGATAGATAGTCGCTGCTCCTCTTTGG 1029799 37 100.0 36 ..................................... TCTCGATATGCATTGCCAAACTTGGCGGGGGGCTGC 1029726 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 37 37 100.0 37 CTTTCAATTCAATGAATCCCGGCAACGGGATTGAAAC # Left flank : GAAGATTCGCTATCGGATGAGCGGACCGTTGGCGACGTACAAACCGCGTCGTGTTCAAGAACGGGTCGTCAAGCGCGATCTCGTGCGGAGGTACGTGGAGATTGAAACGGTGGAGGATTATTTGTTTTGGTTCCGACAACGGATTTTCAGGTATGGAGCGAATGCGCGGGTGTTGGATCCCCCGTGGTTGGCGGCAGAAATTGGCGAGGAGTTGCGACGGGCGGCGGCTCAGTATCAGGCGGGGGATTCTCGGGAGAATTCGAGTTAGAATATTTGGGAAAGTTGTGGTAGAGTATTTCCAAGCCAAATTTTGGCGGCGGAAAGCGGGGTCGATTTACCCGGGGGTCCCGCCAAATGGCTAGAACCTTTACAAGTGAATAATTTCAGAGTTTTTGAGTGTCTCGGTTAGCCGAAGGCCAACGGCTGAAACGGGGGTTTGAGTAGACTCCCGCCAAAAACGGCTCACCGAAGCGCTCGGGGTGTACGTTTCAGCACCCGGT # Right flank : AAGAGATGCAAGCGGCGATCGCCCGATCGCCGACCCTAAAAAGATCCGCTACAATGAACCCGATAGCTCACCCTAAAACCGATGGGTTTACGTTTGGAAAAAGTTGTTCCCTGGGGGCGATCCTTCGACGAATATCGCCGGATGTTTGCCCTCTCCGACGACGACCTCGACAGGCGCATTCTCGATTGTGCGGGCGGTCCTGCCGCTTTTAACGCCGCCATGAACCGCCGGGGAACCCCGATCGTTTCGTGCGATCCCGTCTATCAATTTAGCGCCGCAGAAATTGCCCGACGCATTGACGAAACCTATCCTGTCATCGTCCGAGGGGTCGCCGAAGACCGCGATCGCTACGTCTGGGGCGACATCCACTCCCCGGAACATCTGGGAGAAGTGAGACTCGCCGCCATGCAACAGTTTTTAGCCGATTTCGAGCAAGGCTTGCGCGAACGTCGCTATATCGCCGCCGAACTCCCGAACCTCCCCTTTAACCCCGGCCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTCAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1044218-1049480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1044218 37 100.0 35 ..................................... TAGGCGCTTCGTTGCAAGGTACTAGTGTCTCCGGA 1044290 37 100.0 35 ..................................... ATTAAATAAAACTCCTATTGAAAATTTATTAGGAA 1044362 37 100.0 37 ..................................... CTACTCACAAAAAAGAATTGAATAAAAGGAAGAACTA 1044436 37 100.0 35 ..................................... AACGCACCCTATCTCACTAAGTTGGTGTGGGATAT 1044508 37 100.0 35 ..................................... CCAGGGAAGCCGAAGCGATCGCCGACAGATTGACG 1044580 37 100.0 36 ..................................... CGTGACACTTTCGATGAATTCAATTAATTCTTGTTT 1044653 37 100.0 34 ..................................... AGTAAGGCGTCGAAGAACCCATCATACTCTTCAT 1044724 37 100.0 35 ..................................... TCACGGCCTGCAAGAATTTTATCGGGGAGTTACAG 1044796 37 100.0 36 ..................................... AAACAACTCCTCGAACAGGACATACTCATGCGCAAG 1044869 37 100.0 36 ..................................... AAGCGGATGATAAAATAATTACCTCTTCCAGCAATT 1044942 37 100.0 32 ..................................... GCAAAAAGCAATGGGACTATTAAAGCTTCTGG 1045011 37 100.0 39 ..................................... TCGCATCTTCGTAGCGCAATCGAGTATGTGAGACGAGCA 1045087 37 100.0 34 ..................................... TTTTGTATGCTTTTTTGTATACTTTTTTGTCGAG 1045158 37 100.0 32 ..................................... TTCCCTTGTCCCCCTCTAAATTTTCTCGGATG 1045227 37 100.0 36 ..................................... TGCAGCCGCCCTGTTTTGGAGTGTTTATGCTTAAGT 1045300 37 100.0 39 ..................................... CCTCGATCGCCTGAATCGTTTTTCCTAGACCCATATCGT 1045376 37 100.0 34 ..................................... TAATATAACAGAATTTGATATCAACTCGCCTTTA 1045447 37 100.0 34 ..................................... ATCGCGGAACAGATAAGCCAGAACGCTCCTTGGC 1045518 37 100.0 37 ..................................... CCCTCGAGATCGACATTGCAGAGAGTGGCACTCTCGA 1045592 37 100.0 36 ..................................... CTTTCCAGTAATCTGGCCTGTAAGTCTCGTCTACAA 1045665 37 100.0 34 ..................................... TGTCGAGAATTACGTAGGAAGTGAGAAGGACAAG 1045736 37 100.0 36 ..................................... TTCTTGTACGGCAATCCGCCGCGCATCATCTAAAGG 1045809 37 100.0 37 ..................................... TGTCTAACTTAGAGTTAGAAAGGCGGGGTAATTTCCT 1045883 37 100.0 36 ..................................... GAAACGAATCGCCTTCGTCTCAATACCGCGATGTAC 1045956 37 100.0 36 ..................................... AGCTCAATTTGCAGTTGGCGTGATCGCCCCTCCAGA 1046029 37 100.0 41 ..................................... CGCTATTATGGCTAAAATTTCTTCTTCGGAGAACGATAAGG 1046107 37 100.0 37 ..................................... TTCTTTGAAGTATCCCATGGTATTTGGTCTCCGTTTC 1046181 37 100.0 34 ..................................... GCGCCTATCCGCATCCTGACGGAGGGACTTCCGG 1046252 37 100.0 34 ..................................... TAACCAAAGGAAGTCCGCCTTTAGATCGATAAAG 1046323 37 100.0 40 ..................................... GAGGCGCGACTCTGTCATTCCCTCCCCGAAGGAGAGAATG 1046400 37 100.0 38 ..................................... ATGGGAAGCTCGCCATTGCTTAAGTGGCTTCCTTTAAG 1046475 37 100.0 41 ..................................... ACCTCTTCAGGTTTAAGTTTTGTCGAATAGATCCAGCTCTT 1046553 37 100.0 38 ..................................... AACCTCAGTGGCGCATCCCTAGCCGATGCAATCCTTTA 1046628 37 100.0 38 ..................................... ACTCGACCAGGGAATCGGGAACCGATACCCCATCTAGA 1046703 37 100.0 36 ..................................... GACCGTCTCGCACTTCGAGACGAGCATTGTTTTGTA 1046776 37 100.0 37 ..................................... CAAGTCCCTCGAAGAGGTAGCGGGCGAGATGAGATAC 1046850 37 100.0 36 ..................................... GAGTATTCACGCGCTTTAAGCGCGTAGTGGTCCCCT 1046923 37 100.0 37 ..................................... AGGTACTAAAAGAGATACCATCGGGGTAGGCGAGAAT 1046997 37 100.0 35 ..................................... AGCAAATTGGGGAGGTAGAAAAGGAAGGAACTAAA 1047069 37 100.0 37 ..................................... GATATAGACAATAAGTTTCTGAATCGCCACCACCACC 1047143 37 97.3 37 T.................................... AAAGATGAACAGCTCAAATTCACTTCACTCAAGTTCG 1047217 37 100.0 38 ..................................... CGTACTCCTTATACAACCCCAAAAGCTTAGCGCCCATT 1047292 37 100.0 37 ..................................... CGATCTTCCATTTATTGGAGCAGGAGGGGCGTCCCGT 1047366 37 100.0 40 ..................................... AAATAGTTCCTCGAATAGAGCATACTTATGCGCGAGGAAG 1047443 37 100.0 40 ..................................... GAGGCGCGCAACCAAACCCTAGACGCCGAAAGGGAAATAT 1047520 37 100.0 35 ..................................... TTGAATCATCTTATTCGTATCCTCCGCCGATCGCA 1047592 37 100.0 39 ..................................... TTTTCGCCTCGATTTCCTTGTCGATCAGGTCTAGATTTT 1047668 37 100.0 46 ..................................... GGCAAGAAATAGTGAGGGTAGGGATTTCGTGAGAGAGGGTTTCCGA 1047751 37 100.0 35 ..................................... GGATTGAACTAGATATCTTAATCCACAGGTATATC 1047823 37 100.0 40 ..................................... TAGAGACCCAACAAGGAGGTATTACAGGTAAAGGTTTAAT 1047900 37 100.0 36 ..................................... AATGAATTAAAGTTCGACGAGACGATCTCGGCGAGA 1047973 37 100.0 36 ..................................... ACGGCATACTTCGCCGATCCTATCGAGCCATCGTCC 1048046 37 100.0 40 ..................................... GGCTTCGTATGCCTGCTGCATTTCCACAGGACGATCATCT 1048123 37 100.0 36 ..................................... ATATTCCGCTTCAAGCGTTCCCGTCATCGATTCCAA 1048196 37 100.0 36 ..................................... CGCACAGGAGCCAATGCGTCGCATCGCCGTCGTCGC 1048269 37 100.0 36 ..................................... GAAACTTCCGTTGCCGTAGCGCTGGCTGGAGGTTTC 1048342 37 100.0 37 ..................................... TTCGTCTTGGAACGCCGAGGCAAACCCCATTGAGTAA 1048416 37 100.0 37 ..................................... AGAACCCCAGCAACCCAGTAGCCTCCCTCCCTGCTTT 1048490 37 100.0 38 ..................................... GTCAACCGATAATTTGAGGCCAGGAAACACCTTGGCGG 1048565 37 100.0 37 ..................................... CGTATCCTCCGCCCCCTTCGTCCCCTTCCCCTTGTGG 1048639 37 100.0 35 ..................................... CGTTGGGCTTTCCCCGAACCTGCCGGGGTTGGATT 1048711 37 100.0 39 ..................................... CGAAAATCGACCCCATTATGAAACCTAGTTTCCCCTAAG 1048787 37 100.0 36 ..................................... CTTCTCCAACTGCATCATTTGAGCAGGAGAGAAGTT 1048860 37 100.0 35 ..................................... TAGCTCTGCTTAATCAGCAATAGGGTTCACATTAC 1048932 37 100.0 39 ..................................... TTGATACGTTCTTGAACGAAAGAACCTTCGTATGCCAGG 1049008 37 100.0 35 ..................................... AGTCTCACTTTTTGCCCCAGCAGTTCGGCCTTCGT 1049080 37 100.0 35 ..................................... ACCCGACTGGAAAGCTAGAGTCTGCCGATCTTTTT 1049152 37 97.3 35 ...................................G. ATAGGGGTCATTCAAAACGGCGGCAGCTTTTTCCA 1049224 37 100.0 38 ..................................... ATCGAACTGACCCGCTTGAATGAGGCGATCGCACTCGG 1049299 37 100.0 39 ..................................... AAAAAACTTATTCAGTGGACACAAGCGAATTACGATGTA 1049375 37 100.0 32 ..................................... GCGGGTGGCTAGCGAGTGGTTGCCGCGTGCCT 1049444 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================== ================== 72 37 99.9 37 CTTTCAATTCAATGAATCCCGGCAACGGGATTGAAAC # Left flank : GAAAGATTTACTCTATTTAATAGTGTACGATCTTCCGGCGACGGCGGCGGGAAATAAGCGCCGCCAGCGCTTGCACGATCTTCTCTGTGGTTACGGGACGTGGAAGCAGTATAGTTTATTTGAGTGCTTTCTCGATGCGAAGCAATTCGCCAGTTTGCAGATTAAGATCGAAACACTGATTAAGCCTGCGGAAGATGCGGTTTGCATTTACGTGTTGGATGCGATGGCAGTCCGCAAGACGATCGTTTATGGGATGCCACCCCCTAGACAAGAAACGGTGACGATCGTATGATGGGAACCAAGCCAATTTCTGGCGGGGGAAAGCGGGGTCGATTTCCCCGGGGGTCCCGCCAAACGGCCAGAACCTTTACAAGTGAATAGTTTCGGAGTTTTTGGGTGCCTCGGTTAGCCAAAGGCCAACGGCTGAAACGGGGGTTTGAGTAGACTCCCGCCAAAAACGGCTAACCAAGGCTCTCTGGGTGTACGTTTCAGCACCCGGT # Right flank : TTCCTTCTAACTGTCAACAAACTAATCATACCGCCCCTTCAAGGCCATTGCTGCTGGGCGAGGGATTGAAATAATGGCAGAACGATCGCCCACCAAAACGACAAACAAAAAGCACGATCGCACCTCCCCTAAAAGCACGATCGCACCTCCATCAATTCAACAGAACTCAAATTTTAAAATTTGCTAAATCCCGATCGCCCTCCCCTTCACCATTGGCTCGACCATCCCTTAAACACCCATAAAATCGAGAAAAAACTACCGTCAATCCCTCGCCATCAAAACCACTTAACTACAGAACTTTTCAACACAACGCACGAACATTTCCACCCCCATCCCCAACGCCGTCTCGTCAAAATCGAAACGGGGGTGATGGTGGGGATATGCCAAATCCTTCGACTCATTCGCCGACCCTAAAAAGAAATAACATCCCGGCACTTCTTGCAAAAAGAAACTCATATCTTCACCCCCCATGGTCTGACATTTCGGTACGATCCCCGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTCAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1143089-1142532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1143088 37 100.0 34 ..................................... CTGGCTCATTAGCGGATCGGGCGCCAACGGAATT 1143017 37 100.0 34 ..................................... TAATGGCTATTCCAGGGGGAGCGTGCGATTTTTT 1142946 37 100.0 34 ..................................... GCCGAGCTTCGGCAACTATGCCGAGACAGGAGAC 1142875 37 100.0 34 ..................................... AGCAACAGGACTGGCAGTTGGCGCACCACAACCC 1142804 37 100.0 39 ..................................... GGGAACCCCAGAAAAGGATGGGAATAGGTGATTTTTAAG 1142728 37 97.3 40 C.................................... TCTAGATATTTTGAATCACTTTCATTCACAGTAATCATCT 1142651 37 100.0 46 ..................................... GGGCTTGTTCGATCGCCTGCGGTTGCACCGAAAAGTCCGGTTTCGG 1142568 37 89.2 0 .................................TTTT | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 98.3 37 GTTGAAATTCACTCAAATCCCTTTTAGGGATTGAAAC # Left flank : CGTGGTACGTCTCAGGAATGCCCGGATTGTGGGGCTGAGGTACGCAAAGACCTCTCAACCCGGATTCATTACTGCCATAACTGCGGGTCAATCAAACCCCGTGACGTAGCCAGTGGACAAGTTATCTGTACCCGTGGGCAACGGGGAATCAAAAATGCCTGTGGAGTCGAGGCGACGGGGGATCGGGTCACTGATTCTAGTTGGCTGGCTGTGAAGCAGGAAATCTTTGGGGCGACCCAAGGAATCTCCACGCATAATCTTTGATTTGCGTGGAGAGGATGTCAAGGGGAGTGGATGCAGTACAGTGTGTTCGAGTGCGATTTAACGGATACGCAGTACGCCCGTTTGCGGCAACGGTTGCAGAAGTTGATTCGACCGGAGACGGACAATATCCTGTTTTATTTTTTGCGAGGGAAGAATCAAGGTACCGTCGAGCGCATTGGCTGTCCCCCAGGGATTGAAACAAAAAGAAGACGGCGACCATCAATACCGCCAAGCAA # Right flank : ATAATTTAATCATCGATTTCTTTTTCAAATAGCTTTTCCCCGCACCATTTTAGTAAAATTCATAAAATTTTAGCCATGAATCGTGCATCGATCGCCACTTGGGAACGCGCCAACTCCCAATATACAATCGCTGTAGCGGCGCATATTCATCGCCTCTTAGAACAATATGTCGCCCGCAAACAGAATTTAAGTGTCGATCTTCCTCCTCTCGATAACAGTTTATACGAGAACTTAGGACGGGAAATGAACCCGCCGCCACGGTTAGAAACCCTCTGTCAAAAGTTTGGACTGTCCGCCTTCGAGCGCCAAATTGCGATCGCCTGCATGGCGATGGGATTATTTCCGAGTTTTCGCGGGTTGTGCGCGAACGCCCACGGCTCGCCCCAAATGCCCTACCCCACCTTTACCTTAGCCTGGGAAGTCTTTCCAGAGGCGCATTGGAGCGCCTTTACTCCCCAAGGTCCCTTGCGACGGTGGCAACTGTTGCAACTGGGAAGCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCACTCAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 2127509-2129520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2127509 37 100.0 40 ..................................... ACTATGCACATCGGCGACAAGGTGCGCAATCGTCTCCCGG 2127586 37 100.0 33 ..................................... TATTCACCCCATCGCTTTCACTACCGGACTGAC 2127656 37 100.0 36 ..................................... ATTACAGCTCTAGTATAGAATGGTAAAGGATACTTT 2127729 37 100.0 35 ..................................... TTCTGATGGAAAGCTTTGGGATTTCATGATTTCCT 2127801 37 100.0 39 ..................................... CTACCTCAACAATAACTTCGAGAAGAAACTCAACTCCGA 2127877 37 100.0 35 ..................................... TTTATCGAAGGGGGGGCGATCGAGATCGAGGGAGA 2127949 37 100.0 38 ..................................... CCAAGCGGTATCCTACCTGGGCGCATACATATTGCCGG 2128024 37 100.0 35 ..................................... CTAAGTGAGAAAGAGGCGAACGAAAGCATTTTAGA 2128096 37 100.0 37 ..................................... TACTCGTATCTAGACCAATTTTTTCGCTTTCTGCGTT 2128170 37 100.0 37 ..................................... TAGCACTTTTCTGCTTTGAAGTGAGATTATCTCCGCT 2128244 37 100.0 34 ..................................... CCCGATCGATTTCCGACATCTCCTTGATCGTTCG 2128315 37 100.0 36 ..................................... CAATTTGGCCTGAGCATGCGCAGCAGCTCGAAGCTG 2128388 37 100.0 34 ..................................... CAGACTAACTGTCAAAATTGCCGCCGCTCGATTT 2128459 37 100.0 32 ..................................... GAACCTCAAATGAACGATATCGGCATCCATGA 2128528 37 100.0 37 ..................................... CGATCTGTCGCTGAATGATTCATGGTTTGTTTTCTAA 2128602 37 100.0 36 ..................................... CACGCGCATCATGGCATCCTCGCTGGATTCGGGGAT 2128675 37 100.0 37 ..................................... TTTATATATATCTGAGGTACTATCTAATATCTGATTT 2128749 37 100.0 36 ..................................... ATGAGTAACCCTTTAGCTGCCCGACGAATGAAGCCT 2128822 37 100.0 34 ..................................... TTATCGGTAAATAGTAGAGTATGGGCTAATAATA 2128893 37 100.0 35 ..................................... TGAGCTACTGTAGAGGTTGTTGAAGGTGATTGAGT 2128965 37 100.0 38 ..................................... TAAATCGGCATGCACCAATCTTGATTTTTCAAGATTAG 2129040 37 100.0 36 ..................................... CTTCTCTTTGCAGGATATTATTTAGAGCTTTTCGGG 2129113 37 100.0 39 ..................................... TAGGGTTTCTTCCCAGGTGTTCGGAGAGGTGTTCGGAGA 2129189 37 100.0 38 ..................................... GCAACAGACGATGAAATTCGAGCGCATTTAGACAACAA 2129264 37 100.0 33 ..................................... CGGGCGAAGGCAGCGACTTTCGCAACGGCTCAA 2129334 37 100.0 38 ..................................... GAGTCGCTGCTTGCGGAGTACATACGCTGATAAAGTTG 2129409 37 100.0 38 ..................................... GAATTCCTCTGGCAATGAGCGGCCACAGTCGCTCTTGT 2129484 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 28 37 100.0 36 CTTTCAATTAACTGAATCCCGGCAACGGGATTGAAAC # Left flank : GATCGACTCAATCCGCGTTTGGTGATTCCGACTCATTATCTAACGGAAGCGGCGGGGCAAGGGTGCGAGTTGGTAGAGGTGGATCGGTTTTTGAGTTTGGTGGATCCGGCGATCGTCGATCGCGCTGGAGGCGATACGCTGCAACTGACTCGGGAAAGTTTGCCGGAAACGGGGACGAGAGTGAAGGTGTTGAGTTATCGGTTTTAGGCGATCGGATGGGTTAAGGTGGGTGGAGGGGCGATCGGAAAAATTTTTCTGAGGGGGTAGACAGGAGTGACGGGCGATCGTATGATGTCAACTAAGCCAATTTCTGGCGGGGGAAAGCGGGGTCGATTTCCCCGGGGGTCCCGCCAAAAGTCTAGAACCTTTACAAATCAATAGTTTACGAGTTTTTGAGTGCCTCGGTTGGCCGAAGGCCAACGGCTGAAACGGGGGTTTGAGTAGACTCCCGCCAAAAACGGCTCAACGAAGCGCTCTGGGTGTACGTTTCAGCACCCGGT # Right flank : CTTCTTTATCTTCGAGTCCCCATCGCACTCGATCTTGCAAGTGAACCAATCCCCTGAAGGGGATGGCAAGCCCTCGATCGCCATCAAAAAAGACCGCCGGAACGGTCTTTCTCTGTTCGTATTCGCGCACGACTCATCGATTACTCAGACATCGATCGCCCGTTCAAGCAAACACCACGGGACGACTGTTACCGAAAATCTCGTGTAACTTCACCACCGAGCCGATCGCCGCGATCGCCGGGGCCTCAAACCCCGTTTCCTCCACCTGCCGAACGATCGAGCCAATCGTCCCGATCAACTCCTCCTGCTCGATACGAGTTCCCCAACGAATCAGGGCGATCGGCGTTTCTGGAGACAAACCCGCCTTTTGTAACTCCCGAGTAATATAGGGTAAATTGTGGATCCCCATATAAATCACGATCGTTTCCGAACCGTGGGCGATCGCCGACCAATTCACCTCGGGTCGGTACTTCCCCGCCGCCTCGTGCCCCGTCACGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAACTGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 3601080-3603169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================== ================== 3601080 36 100.0 35 .................................... TATCCCATCGGACTAGGTTTAATCTCATGCTTCTC 3601151 36 100.0 34 .................................... TCGGCTTTGGCCTATCATCAAAAGGTGCAGGATT 3601221 36 100.0 42 .................................... CCTCGATGTTTGCACCCTCTAAATTAACGCCTTCGAGATTGG 3601299 36 100.0 40 .................................... CTGACATCAACGTCAATTTTCACCTTATTCTGATCCTGAG 3601375 36 100.0 41 .................................... CTCCCCGATAGAACTCCTTGTTCGACCGCCGCGAGCCGTCG 3601452 36 100.0 35 .................................... AGCTGAGATCGGCACCCTCTAAGCATGCGTCACTC 3601523 36 100.0 72 .................................... GCCTTCCGTAAGTCTACACCACGTAAGAAGGCGCGGTCGAGGATCGCACCGCTCAGGTTGGCTCCCCGGAGA 3601631 36 100.0 37 .................................... GTTAAGGTGTCTTTCAGAGAAAGCAGGACGCTCGCGG 3601704 36 100.0 38 .................................... CCCTGAGAGGTTTACACCTGAAAGATCTGAATTGCTGA 3601778 36 100.0 41 .................................... CATACTACGAATTCGAAGATTTCCTCGCTCTGCCATTCCTG 3601855 36 100.0 37 .................................... ATACCTTCACGGTCTGGCTCCTGAGGGCAGATGTTAA 3601928 36 100.0 38 .................................... AGGCCACCTGGGCCGCTAAGTCCAGCATGTTTGAGGGA 3602002 36 100.0 43 .................................... TTTAATGCTCGGAGGTCTATGCCCCCGTACAGCCGAGCCTCTG 3602081 36 100.0 37 .................................... GGATATGAAACTCTTGATGTTTTATCTCCGAAAGTAT 3602154 36 100.0 47 .................................... TCTGGGAGGCAGGCGAACGCCCGAAGGATCTCCTCCTGAAGGAGGGA 3602237 36 100.0 45 .................................... CTCATTCCAAACTTTCCTTTTTTGTTCGTGTAACTCAAATATAGA 3602318 36 100.0 38 .................................... GAGGTCAGCGCCCCGGAGGTCAGCGCCCCGGAGATCGG 3602392 36 100.0 36 .................................... GAAAGAACCGCAATGTTTGAGAGAGAGATATCTAGA 3602464 36 100.0 41 .................................... TCAGAATCTTTAAAGTAGCCCATTGGTTTTCCTGGTTCAGT 3602541 36 100.0 36 .................................... ATAATATAATCGATCTTCGATTCCGCTATTTCTCGA 3602613 36 100.0 37 .................................... GAAGAAGTGTTAGTAACTCCTGGGCTTTATCATTAGA 3602686 36 100.0 41 .................................... TATTCGACCTAACGTGTGGAACTCATTTATTAGAATTAAAA 3602763 36 100.0 34 .................................... ATTTCTCGGAGGTATTCATCCTGGATTTGATTCA 3602833 36 100.0 32 .................................... AATACTTTCGTATCCGCCAGTTCTGCTTCAGT 3602901 36 100.0 46 .................................... TTGATGAAGTCAGCAACATCTTCATACTCCAGAGGCTTCTCCCCTA 3602983 36 100.0 35 .................................... AATAACTTATCAATATTCCATCCGTATCATTCTAA 3603054 36 100.0 44 .................................... CTCCTCAAAGAGTTTCTCCCGGTTTTGTACTCCGGATTGGATGA 3603134 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================== ================== 28 36 100.0 40 GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GAAACAACCTTATGTTGCCTACCAAATTCGCTAATGTTGTTGTATGTTATCGTTTACGACCTTCCAGACAATAAGCGGCGTCAGAAAATCCACGACTTGTTAGAAGGATACGGACAATGGGTACAGTATTCGACCTTTGAATGTTGGCTCAGTTCTGACAAATACGCAGAACTCCAAAAACGGTTGCGTTGCCAACTTAATTTGGATGAAGACAGTATTCGATTCTATCCTCTTTCGCGGCATACAGTCGCTCAAGTCGAAACCTGGGGCATCGGTCCGCCTTTATGGAAAATGCCCGGTTCTACAATTGTCTGACTCTCCTGCGAGGCTCGTCTCAAATCCCTGAAATGCCCAATCTTCGTTACGAGCCTCGATCCTTTGTCTGTCAAGCCTTTGAGCCTTCTTCCCTCCTCTCTTTTGGGCCGAATGTCATGACAAAATGGCTGAGGCTCGCAAACCGCCTCTGGACATCTGACCGCATAAGGGTTTCAATAGAGGGG # Right flank : CTCTATATCTTTGTCTATTTTTACTAAAAAAAGAAACAGCTTACCCCGGATTGACTGCTGCTGACGCCTCAGAACTCGCCACCTCAAACCAACTTTCCGGGTTGTCTCTTAGGGTTTTTGCTTGTGCTTTCCCCAGTAAAATTTGACCTAAGCGGAAGAAGACTTTCGCCATTGCGCCTCGATCGCTTAAATTACCCACCGGAATTTCGATGACTTCATACCCTTCATAGCGCAGTTGTTCGCGAATATCTCGATCGCGCTTTTGCCGATCTGGGTCGCCATGCAAATGCCGACTCATGCCATCGAGATAAATGCAGATTCCCTCAAATCGTTCTGTTGGGTCTTCATAAAAAAAATCGGGAGTGGTGGTTCCCAAGGGTCTGCCTAAATCAATGGCATACTGTGCTGCTGGAGTGGGAAAACTGGCGCGTTGCAACATATCCCGCAGAATCGTCTCGGGATTGTTGACGGGTTTTTCTCCAGAGGTTTCTTCCACGTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 4026455-4029482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4026455 37 100.0 36 ..................................... GGTTCATTAATTCGGGGTCGAGTTCTATTAATAATT 4026528 37 97.3 37 C.................................... AATATATAAAACATAAAAAAGAAAGGGAATATATTGG 4026602 37 97.3 33 C.................................... CGATCGCGCGCCGACGGCGACAAAGAATAGGGC 4026672 37 97.3 33 C.................................... ACCCTTCAACCCTCCGGTAGCTCTGACGGTAGG 4026742 37 100.0 39 ..................................... GGGAATCCAATCCCGGCAGGCTCGGGGAGAGGCCTACGA 4026818 37 100.0 35 ..................................... TCATCTGGATACTCCGCACTGATTGGATCCCAAAT 4026890 37 100.0 35 ..................................... GGATCCCGACGAGTATTTTCTCTCATTCCAGGGAG 4026962 37 100.0 37 ..................................... AGATTCCGACCTGTCTGGCACCAACCTCTCTGGGCGC 4027036 37 100.0 34 ..................................... CTACCCATTCTCCAATACTAGGGGTTACCGAGTA 4027107 37 100.0 35 ..................................... CCTGTGCCTTACTCGTACTACGTCCACTATGGCTA 4027179 37 100.0 35 ..................................... TGTCGAAAATCAACCTCTCTGGTCGCGACCTGAGC 4027251 37 100.0 35 ..................................... CTTAGGAATGGGCGCCATTTTTCGAGCTTGGCATT 4027323 37 100.0 35 ..................................... CCAAAAAAATCCGAATCGTCGGTCACCGAGTAAGG 4027395 37 100.0 34 ..................................... GGAACGCGGTGTCCGGGACGGGAATCGCCGCACT 4027466 37 100.0 36 ..................................... AGTCATCCTCGGAGCCACCTGTCTGGGCATCCTCGG 4027539 37 100.0 38 ..................................... ATAATCGAAGCATACGAACAAAAAAAAAGGAAGTAGAG 4027614 37 100.0 38 ..................................... CTATCTATCCCCTCCACCTGGATGATCAAAATTGGACC 4027689 37 100.0 35 ..................................... CTGGGATCTGCGATCTCCAGTCCCAAAAAGTTCGC 4027761 37 100.0 34 ..................................... GCTCCCTACGCCCATTGATAATTAGATAGCACCC 4027832 37 100.0 36 ..................................... CCAGGGTGCGATCTATTCTCCCATGAGAATTTCGGC 4027905 37 100.0 35 ..................................... GGTGATGTTTGTCAAGCTTTCGTTCAAAAGTGAGA 4027977 37 100.0 34 ..................................... AGTCGCACTTTCTGCCCTAGCATTTCGGCTTTAG 4028048 37 100.0 36 ..................................... GTTCTGGCGTTTTCGTAAGATTTTAAAAAATTATCG 4028121 37 100.0 37 ..................................... TCGCTCCCGTTCCCGACATTAGCCAACTGCGGAGCTC 4028195 37 100.0 35 ..................................... AGGGCTTGAGATGCCGCATTAGTAGTAGCAGCATA 4028267 37 100.0 40 ..................................... TTGATTAATTGATTAGACATAGTTGATTGTTCCTTTTGAT 4028344 37 100.0 34 ..................................... GCACGAGGAGATTGACCCGGTAGGGGTGGAATCC 4028415 37 100.0 36 ..................................... GCAATAGGGGAGGATGTCAACGGCGGGAGAGTCCGA 4028488 37 100.0 37 ..................................... ATGGTTCCTGATTGGTCGAGTCTTTCGCAATTCCCGT 4028562 37 100.0 38 ..................................... TCATTTGCAACGTATCTTTAAAAGGTAAACACGAAGCC 4028637 37 100.0 37 ..................................... CACTCTCCGGAAGCGCTCGACGGATCCCCCGAACCGT 4028711 37 100.0 35 ..................................... CAGTAGAAGACTAAGCTGCTCGTATTTTGGGATGT 4028783 37 100.0 36 ..................................... CCATCGGCGGCAATGTTGCTCCGGGGTCATGGGGAG 4028856 37 100.0 35 ..................................... AGGACTCTCTCAGCCTCGGCCTTTGATGCAGCATA 4028928 37 100.0 38 ..................................... ATCATTTTTCTCCTGGTTGGGCGATCGTTTTTCGCGAT 4029003 37 100.0 36 ..................................... ATCGGATCTATCCACTCGATGGCCGCCGCTTGCCTC 4029076 37 100.0 39 ..................................... TGAAGGCGTCTGTAGTGGTTTAAGTATAATGGGAAAAGA 4029152 37 100.0 36 ..................................... TGTTGTATACTTTGGAACTTTTCCCAATGGTGGCTC 4029225 37 100.0 36 ..................................... TCGTCCAATCGACCTGAAACTCAACTCCTACCTAGG 4029298 37 100.0 37 ..................................... GCTTGGGACTTTCCGGCCTTCGGACGCGGTCTGGGTA 4029372 37 100.0 37 ..................................... CTGGGGCAGCTTTTCGAGTCGAAGCTCGGAAAGTCAG 4029446 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 42 37 99.8 36 GCTTCAATGGGGCTGTCCCAAAAAGGGACAGTGAAAC # Left flank : CATTGTGAAAAAGATAGTCGGCCAGCCGCCACATTTGGTGAGGTTTGGCACTGAATCCGTGAAACATCATCACCGTGCCGCGAATGGGTTTTCCCGGATCGTGAAAGAGATAATAAGGATAAGCCCACTCGCGGCGATCGCCGTGACGGGCGATCGTTTCTAGATAAGCATTAATCGCTTCTTTGGTACGGCGAAGCTGTTCCTCGGTCGGAGTCACGAAAGAGTCTGTATTGGTCATAACCCGGCGACTTCAAAATTGATAAAAAAGACCACCTACGTTATAGCATTCGAGCAAAGCCGTGTCAGGGGTTCGTAGCCCCTGCACTCGGGTGACTTCTTCGATCGCCTCACCGATCGGGCATCAGTAAGCCATACAATTTTTAAGCCATACAATTTTTATTGAGCAAAACATAAAACATAATAATTTTTTTGCTATTGATAGGTTGGTCAGTTAGATGTACTGAAACTCCAACTGACAATCGTAGAGAGTCCAGGATTGT # Right flank : CTGCTACCCTCTGAAACCCTGATGGAATAGAGTTTTCAAGGTGCAGTTTGGCGGGGGACTGAAAAAACTTCATTTCAGCGATCGCCGTCCTGAGAGATTGTAGCACATCGATGGCCAAAAACCTTATCCCATAAAGAATACAGCAATTTGGCGGGGGATTTTTGGAGACCGATCGCCGTATTCCTTGCTCATTCAAGGTTTCAGAGGAATTACAGCTCATTGCCAATTCTCCCGCTTTCCCCCGCCAAAAAATTAGAGATCGGGCACGAACAACCCCAGTCCGAAATGCGCGCCGTAGCCGATCGCGATCGGTCCGCATTGTTCCTTCTCAAACTCTAACTCAATCCAATACCCTCGGTCTGAGGATTGATGACCTTTCCCCGAAGAGCGGCGGCGGCGGAAAGCGTGCCAGGGATAGGGACAATCGATATCGGAGTCGCTCAAAACACGAACGTCTGCCAGAGGGGCGATCGCCCATACCGATCGCAAATGGTCGATCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCTGTCCCAAAAAGGGACAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 7 4260425-4262673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================== ================== 4260425 35 100.0 35 ................................... CAGAGATCATTTGCAGGAAAAAAGATCTTTCCGTC 4260495 35 100.0 38 ................................... AAAGATTTTTCCGTATTTGCTTGGGTTGGAAACAACTC 4260568 35 100.0 39 ................................... GATTTAAAGTCTGTAAAAAGTGGGGGGAGCCGGTCCAGT 4260642 35 100.0 37 ................................... TTGAATTACAACATCAAGCTTTATCGCGGCGATGAAA 4260714 35 100.0 37 ................................... AACCGTGGAAAATCGCGAAGACCTTTTAACGATCTTT 4260786 35 100.0 38 ................................... AAATGGTCTTTCTGCTATTCAAGGCTTAGGTGGCACTC 4260859 35 100.0 37 ................................... GTTTTTCTTTTTGTTTTTTTCTTTTCTTTTTTCCTTC 4260931 35 100.0 34 ................................... TTGTTTCTTCTTCTTCTTTTTATCCCCACCCCTG 4261000 35 100.0 34 ................................... TATGTAGGCGGAATTCATTACGCTTTTTATGAGG 4261069 35 100.0 33 ................................... CTAGTTTGCGAGGAAGAGAGCGCAAAGATTCTA 4261137 35 100.0 56 ................................... CCGAACCTAGACAACACAAGAGTTTGACAGTCGGATTGCAGAAAGATACCGGATTT 4261228 35 100.0 43 ................................... GCGATACCGCACGATATGTGCGGTACCGTATCCAAGACAATAA 4261306 35 100.0 45 ................................... GTGGGGCGAACCCCTGGAACCGGGCTGGCCCCCGAACTGCGAACA 4261386 35 100.0 38 ................................... GTCTGCACTGAGTGGGAACTCCGTGACACAGACGGAGT 4261459 35 100.0 40 ................................... CCGTCGCAGCCTTAGATTTGATTATCCGGGGGACTCCCCC 4261534 35 100.0 37 ................................... GGGGTCCAAGTCGGCCCCTTCACAGGGCGAGGAGGGG 4261606 35 100.0 37 ................................... AAGTGGCTCGACTTTACGGTACACGGGTCCGCAAAAT 4261678 35 100.0 36 ................................... TTTTTGTTAGGGCCCGGCATGTCCGGGAACCCGCAA 4261749 35 100.0 40 ................................... ATTCCTAAAGAGGTTATCTGGTCCCAAATGGACCGCACCA 4261824 35 100.0 43 ................................... AGTTTCGAGCCAGCTGTCTGAGTTAGTTGGTCTTCCCAAAAAA 4261902 35 100.0 40 ................................... GTGGCTCCAGCTACGTATACGTAGGAGTGTACAATGTGCG 4261977 35 100.0 36 ................................... CCCTTGTCACTTTTGTCACTTGTTTTGTTTCTGCTT 4262048 35 100.0 40 ................................... GATCGTAATGGGGTGCAAAATGCACTCCAGGTAATCAGCT 4262123 35 100.0 39 ................................... TTTTCTTTTTTGTCCTTTCTGTTGCAGCCACTACTGCTG 4262197 35 100.0 39 ................................... AACCTGTTCTCGTACAGGTCGAAGTGTGTGTTAAGTGGG 4262271 35 100.0 41 ................................... GGGGTGTATAAGGGGGGGGGCTCCCCATACCTCCGTCTATT 4262347 35 100.0 40 ................................... AACTATACTACAAAGTATTTTTTACTCAAACTTGGGGAGA 4262422 35 100.0 37 ................................... TATCTCCGAGTATTCGGAAACAACAACATAGACTGTT 4262494 35 100.0 37 ................................... AAAAGTTTTATGTTTGGGGGGGCGACTACGTCTCCCT 4262566 35 100.0 38 ................................... TACGGCATGGCCGGACCCCACCCCTACGTGGGGGTATA 4262639 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================================== ================== 31 35 100.0 39 GTTTCAGCACCTTTTCCCTTCAAAGAGGGTCAAAC # Left flank : AAAAAGCGCCCATCGCACGGCTCAGTAGCTCAGTGGTTAGAGCAGGGGACTCATAAGCCCAAGGTCGCAGGTTCAAATCCCGCCTGAGCCATCCACTCCATAAGGCTTTCAGCCCTTCATCCTCTAAGGAACCCGTCATTCAAAGGGTAAAGCCTACTGTCGGGATGTAAGACCGAACCGTAGAGGACACAAGAAATCTAGGATTGGGTAATCTGTTGGGTAGGAAGCCGCTATTGCAATCTCCGATTCAATAGCTGTAGTTCACGTCAATGAGTGAAGTACCCGACGCTCATTGCTACGCAATAGAGCGCGGGCTTCTCTCTTCACCGGGAACCGCCTCTAGGAGGGTAGACTTTCGCCTGCCTCCCTTTGGTCTTACATTCCCTCCGAGAGCAGTAGACCCACTGACTTCAGTCCAATATCCGCAAGCCTTCATTTCTGATATTGATTGCTGCATTGATGTCCCTGTCGTGCCTCTGTTGTTAACACAGGTAGAAATA # Right flank : CCCTTGAGGTTTTAAACTCAAGCAGTAAGCTGATTTTACACCCATAGATCTGAGGGGGTCAAGTTTTTGTAGCAACAACTGGCTCCTTATCGGGTGAAATCACGAAAAATCGTCAGCGCAATGCTTCTGGTAGAGGACGATCTGAGGGGGTCAACCAAAGAATCAACGTTTCCACGATCGCCCAACCCCCTCAGATGCTTATCGATCGCCATAAATAAATAAGTAGAACTAATTTAGAGATCGCGGATTTGGTAAATACGATGTTTGACTTCTAGGGGAATGTGGGGATCGTCAATGACGCGATCGAGTAATGGCGAAAACTTCCCTTGATTGTGGGCGATCGCTACGACCAACGCCTGCCAATTAGCTAGGGGTAAGGAGTTGCCTTCTTCGCCGATCGCTTCAAGTACCAAACCTTCGAGAAACTGCGGATCGTACTTCCCCAACTGATTGAGTAATCCCGTCACCATCGTCTTGTCTATTTTACCACGAACATCGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCACCTTTTCCCTTCAAAGAGGGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 8 4269452-4271389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 4269452 35 100.0 38 ................................... GGGATACATTCCAACGTACAAGTTCGGAGGGTTGGAAA 4269525 35 100.0 38 ................................... ATCAATACCGACTTCATAGTCGGTTATGAATTGACGAT 4269598 35 100.0 37 ................................... GTCTATGTTGTTGTTGTTGACTGCTCCGAATACCCGG 4269670 35 100.0 41 ................................... TTGTATAGGGGTTACCGTCCAGCCGAGGGGCTGCGATAACT 4269746 35 100.0 37 ................................... ATCAGCTTCAGACTGTACCTGCATCTGAAACCCATCT 4269818 35 100.0 37 ................................... ATGGCCGACATCCGTCTCCCGTAATACACCAATAGTT 4269890 35 100.0 39 ................................... TCTGCCCATTCCTCACAGACCGTCACTTGGACGAGAATG 4269964 35 100.0 37 ................................... ATTACCTCGAACTCGAGGCTTACCGTGCTAGTCCCGT 4270036 35 100.0 39 ................................... TTAATTAGCCCCGATGAACACTCCAAGCGGAGTGCTCGG 4270110 35 100.0 41 ................................... TGGTGCGGTCCATTTGGGACCAGATAACCTCTTTAGGAATG 4270186 35 100.0 37 ................................... CTCAGCAGTCGGCCAGCGAAGGGTTTCTTCGCCAGTT 4270258 35 100.0 36 ................................... ACCCAAACCCATTCTGTCGTTTCCTCTTCGCAGTTG 4270329 35 100.0 38 ................................... TCTGGTGCAATTACTGCACTGAATGACGTGAGGTTCAT 4270402 35 100.0 37 ................................... GAATTAAAATTTCTTGAGCAGAAACACTAGAAACACC 4270474 35 100.0 38 ................................... GTTTATCACCTTTGGATCCGTCAGGTCGACGGTACCAG 4270547 35 100.0 42 ................................... GATTTGGGTTAAACGGAACGCCGTTAAAAGTTGTCATGTCGA 4270624 35 100.0 38 ................................... TCTTGAGTTTCATAACGAACTCCGTTGTTGTACATGCA 4270697 35 100.0 33 ................................... TAGACTGTATCCAAGGTCGAGGCTGTACTGCTG 4270765 35 100.0 38 ................................... ATTGGAAAAACTTTCCTTGTTCATTTCATGTGGAAATC 4270838 35 100.0 39 ................................... TGCCCAGGGCAAAAGGCTTGCCCATGGAGAGTGGAGAAG 4270912 35 100.0 39 ................................... GGGACCCCAGGGTACTGCCCTTGGAGCAATTCCCACAAC 4270986 35 100.0 40 ................................... AATTGCGAGAGCTTGGTTTAGCATGACACCGCCAGAAGGT 4271061 35 100.0 40 ................................... GAGCTCCACCCTTCCGGGTCGGAGCGAAAAGGTTGTTCGA 4271136 35 100.0 39 ................................... GGGCCCCTCCGGGCCCTCGACCCACTCCACACAAACTGG 4271210 35 100.0 38 ................................... GGATCGTCGACTGGGGACGGTTGGGATCAGCAGTAGTG 4271283 35 100.0 37 ................................... AGTGCAGTAACCGCATCGGACCCTTCAGAAGCCATCT 4271355 35 97.1 0 ..................................G | ========== ====== ====== ====== =================================== ========================================== ================== 27 35 99.9 38 GTTTGACCCTCTTTGAAGGGAAAAAGTGCTGAAAC # Left flank : GCAAAGCACTGTTTTTGGAGATCGCACGACAACCGGGAATCACTACAGCGCAACTGTGTGCTTATAGTTGTGCTAGAGGAGGTTCACTCCAGCGCATCAATCATCACTTAGCAGGCTTGATTGATGAGGGGTTTATTTGTACCTCTTTTCGCGATCGACGCGGTAAGTCCCATTATCAAATTACCAAAAGTAAGGGGAAACGAATGCTAAAATATTTGCAGGCCGCGAGGCCAATCAACTCCCACCTAATTGATAACCCGGTTCAATGATTAGTTAGGTTTATCTCTAAAATCTAATCGATAAGCATCTGAGGGGGTTAGGCGATCGTGGAAACGCTGATTCTTTGGTTGACCCCCTCAGATCCTCCTCTACCACAAGCATTGAGCTGACGATTTTTCGTGATTTCACCCGATAAGGAGCCAGTTGTTGCTACAAAAACTTGACCCCCTCAGATCCATGGGTGTAAAATCAGCTTACTGCTTGAGTTTCAAATCTCAAGG # Right flank : GAACAGTGGGAAGAAGAACTCATATCCATCTCCCTTAAAACCATATACGAACGCAGATCCTCGGTTGCAATGCTGGAACTGTTGCATTTAACCGAGTCTATGACGGCCATTTATTTGACTCAACCCGGTTCCCTACTCGACGCCAAACGTGGAGTGTTTGAACTGTGGCACGACGATCGCCGCCAACGGCGTATCCCCGCCAAACTGACCAGCCAGATCCTGGTGTTTGAAGACAGTCAACTGTCTAAAACAGCGATCGCCCTAGCGATTTCCTTTCGCTTACCTGTCTTATTTCTCGATCGCCACCATCGCCACCTCGGGCGCCTTCACCTCAACCCTAATAGTGGCTCCCAACACCGATCGCGACCTGGAACGCCCGATCCCGACGATCGTCGCGATCTCGCCGAACGCCTTGTCAGTGCTATCTTAAACAGTCGCCAAAGCTTATTAAATACCCTCGATGGTGCTATTTGTCCCACCGTCGAACTGACCCGAGGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCCTCTTTGAAGGGAAAAAGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 9 4274885-4276240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4274885 37 100.0 36 ..................................... CTTGTGGCTGGAATGTAGAATACCTTCTTCTCTGAA 4274958 37 100.0 36 ..................................... CCACATTTGGTCTACATCCGGGGGGATGTAGTTTTT 4275031 37 100.0 34 ..................................... TACAACGTTGAAGTCAGTTTCCAACTGACGGAAG 4275102 37 100.0 37 ..................................... AATCAAAGCTTGGTTCGAGACCAATCGATAATTCCTA 4275176 37 100.0 35 ..................................... TTCAACCCAAGATCCTCGTCGATTTCCAATCGAAC 4275248 37 100.0 39 ..................................... TCAACCCCATAGCAATCCGCCAGCACGGTTAATTGGTCT 4275324 37 100.0 34 ..................................... GGGTTCTTGCCCGACAAACTAGAGGTAATCTCTA 4275395 37 100.0 37 ..................................... AGATAGATACTCTCTTGGGCTAGTAATCTCAACCCTT 4275469 37 100.0 36 ..................................... TTTCTCAAGGATTATTTGATTTAATTATTTGGGTAG 4275542 37 100.0 36 ..................................... ACTCGCAATCGCTTCGAGCGATAGATCTTCTTGGCA 4275615 37 100.0 38 ..................................... AAGTATATGAACCTAGTCGATCTTCTAATGATTGATTC 4275690 37 100.0 36 ..................................... GAATCCCATATTCTAGGTCTCTTCTTCCAATAATCT 4275763 37 100.0 40 ..................................... CTTGTGTCGGGACAACACCTCCTCTAGTTGCTGCGGGGGA 4275840 37 100.0 37 ..................................... TTCAGGAAAGTTGCGAACCTTTGGCCGCTAAGTTTAC 4275914 37 100.0 36 ..................................... CTTATATACTTTCTTATCAACTGAGGCGGCGCTCAA 4275987 37 100.0 37 ..................................... AATCCACTCTAGAGGGAGAGTGCAGAAGTAACCATGT 4276061 37 100.0 33 ..................................... AGCAGTTCGACGCTATGTGGCGCTGGAGAAACA 4276131 37 100.0 35 ..................................... ATCTTTGATATCTGCCCTTTCCCATCCTTTAAGGT 4276203 37 86.5 0 T...G...T....G............T.......... | T [4276205] ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.3 36 GCGATCGACCTTCATTAGAAGGAAAAGGTGCTGAAAC # Left flank : CTGCGGAGTATGATTTGCGGACTTTTCAGCAACCGAGAAGCGTACTCGGTGGGATTGTCAGCATTTGGCAAGGAAAACCCGACGCATGGGAGGCGATCGTGCATGGGGTATGCAGCACCCAGAATAATTCTAAACCGGACTGGTGCGGCAATTCCAAAACGCGCCCATCGGGTTATGCGGTACGGAAGTATGAGGATTGCTGCTGGATTACGGTATTCGATGCGGGTGTCGAAAACACTTTAGAGGATCGAGGATTTCGTAAAATTTGGCCGCGATCGCCTCAATGATGGCAGTTATGCAAAGACGCTGTATCTCGGGAATCTGGCGGCGGATTGACGATCGCTGAAATGACGTAAATTCGTAAAGCCCCGCGCACCTTATTCCATAAGGATTACAGCCATTTTTGAGGAAATCGTTCAATTAGATTGTCATGACATTTTTGCTCCCCCGCCAAAATCTCCTCTGGAACCCTCACCAGCTCGGCGGTTTAGACGGGTAGA # Right flank : CTTTCTGTTTATGAGTAAAATAGAAGAAGGTGACAAAAAACAGAAACTTTTTTGATTTTCCAGACAATACAGTATGTCCATCACCTTCAGGCAGTCTAAAATTGAAATTCCCGAAGCGGCGATCGCTCAAATTTGCCAGGATTACCATATCCGCAAACTCGCCCTTTTTGGTTCGATTCTGCGTGATGACTTTCGTCCGGATAGCGATATCGATATTCTGGTTGAATTCCAACCGGGAAAAACACCCGGTTTTGGTTTCATCGACATCCAAGACTGTCTCAGCAACTTACTGGGACGGACTGTGGATTTGAATACTCCCCAAGACCTCAGTCGCTATTTTCGCGATCGCGTGGTTTCAGAAGCTGAGGTGATTTATGGTGAACGCTGATGCAGTACGACTACAACATCCAATTGATGCTGTCTAAAAAGTGACTTGCAATACAACCTCATACCAAATCCGGTTGTAAAAAATCGGTTTTCGCTCTCTCTTTAGCCTGCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATCGACCTTCATTAGAAGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 10 4380496-4379530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4380495 37 100.0 41 ..................................... TCTCAGCAGGTACACGAATGACCGGAGCTTGAGCAGAGGAA 4380417 37 100.0 39 ..................................... CCGTCCACCGTCGGAATAACGTTATCCCATTGGTCTCCA 4380341 37 100.0 37 ..................................... CCGTTACTGAGGACGACTAAATCTTCCATCTCTACCA 4380267 37 100.0 39 ..................................... TAAATATCTCTCCAGTCCGCCGCGCGAACCCTTTCACTG 4380191 37 100.0 40 ..................................... TGTTCTCGCCTTTACTAGAGAGAATCCTTCGGATATACGG 4380114 37 100.0 48 ..................................... AGCCAAACTGTAGCCACCACAAGGGGTGGGGTACAACTTGACCTCAAG 4380029 37 100.0 41 ..................................... AACCCGTGCTTGGGTCGCACTCTCAGCTTTACCGATAAGGC 4379951 37 100.0 44 ..................................... CCTCACGGTTACGATAGTCAGCCCGGTTCTTACCACGCCGACTT 4379870 37 100.0 37 ..................................... GACGCGCACAGGGGTTACTTGTCGAGAAGTACAAGCC 4379796 37 100.0 44 ..................................... AATTCATCGTAACCTTTTGCCACTTCCTTAGCTTTAAGCTTCCA 4379715 37 100.0 38 ..................................... TCCGCGTAGAGGTTCAGTTGACCACCTCCTCCATCACC 4379640 37 100.0 37 ..................................... TCAAGACACAAGGTAGACAGTTTATCGTCGAAGAGGG 4379566 37 73.0 0 ..........................TTTCGGT.GGG | ========== ====== ====== ====== ===================================== ================================================ ================== 13 37 97.9 40 GTCACTTATGCCCAACTCCCCGCAAGGGGATTGAAAC # Left flank : CGTGGAAGGGGAAATTCTCTGCGAACTGATCGAACGGCGTTGGTTGAAGGTCCTGAAGCTGTCGGAAGACAGTTTGCGCGCCTATCCGCTCTCCGGTACCGCGAAAAAGCAAGCCAAGATCTACGGCAGTCCGCCCCTGTACGAACCGCCGGATTATTTGATTTTGTAACGTCCCGCTAGGGGCGTAGCGCGATCGTGCCTACCTGGAATCTCCATTTGACGCGGGATTCCAGGTGTTGTTTCTAAATGTAACAATTGCCGAAACTGCGACGGAACGAGTAAAATAGAGAAAAATAGAGATTGACGTTTTCAGAGAGAGTAAAAATAGTATTTTCCGCCTTTTTCTTTCTGAGGATTTCGGTTATAGTGGTTTCGTGGTTAAAAAACAACCGCAATTTCAGCGCCCCAACAGCAGTTTAACTTTTGTAAAGCTGCTCCTCCGTACTCCGGCGCAAACGCACCTTGAAAGCCAAATACAGCGAGAGTTTCAATGGCATAGG # Right flank : TGCGTTAGCGGGCAAAAACATCCGGCGAAAGTCCAGTAACCCACCAATTCTTAGAATTAGAAAATGGTGCGTTATGGCGGACAGATAAATTAACCCTGGGAAATCACAAATCATCGCCGCCTAACACACCCTACCAGACTAAAGAGGGTATCCATGAAGTTTCGGTAGGGTGCGTTAGTGGGCAAAAACATCCGGGGAAAGTCCAGTAAATTACATTCCCGCGTAACGCACCAATTCTTAGAATTAGCGAAAGAATTAAAAAATGGTGCGTTATGGCGGACAGATAAATTAACCCTGGGAAATCACAAATCATCGCCGCCTAACACACCCTACCAGACTAAAGAGGGTATCCATGAAGTTTTGGTAGGGTGCGTTAGCGGGCAAAAACATCCGGGGAAAGTCCAGTAAATTACATTCCCGCGTAACGCACCAATTCTTAGAATTAGCGAAAGAATTAAAAAATGGTGCGTTATGGCGGACAGATAAATTAACCCTGGGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTATGCCCAACTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 11 4667793-4669506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================== ================== 4667793 37 100.0 46 ..................................... CATCAGCTGGTACTTGAATATCATGAGGTATACGATAGTCAGGAGT 4667876 37 100.0 37 ..................................... GTCTGTGCCTGAAGAAGAAGCTCACGTTCCTTCAACA 4667950 37 100.0 41 ..................................... TGAGGGAATACTTTCCGGCGACTAATAACCCCTTAGCGGCA 4668028 37 100.0 43 ..................................... CTCCAGTTTTTCGAGCGAACCCTTTCACTGGTTTACCTCGAAG 4668108 37 100.0 42 ..................................... ACTTCCAGTGGGCTTTTCGCCCACTCAAGGACTTTTGCCGCT 4668187 37 100.0 38 ..................................... TTCTGCTACAATGTGTGGAGATTTATTGAGGGAACATG 4668262 37 100.0 42 ..................................... CATGGCCCACGTCAAGGCCATTTGCACTGATATATGCTGTAT 4668341 37 100.0 43 ..................................... GCCAGCTTCATCGAGCTTAACCCCTTCTTTCGTGTATCCTTCC 4668421 37 100.0 43 ..................................... GAGTCTAGTGTTGCTCCAAGAGCTACGAGGTTATAAGCTTGAA 4668501 37 100.0 63 ..................................... GGGGTGAATGTCAAGTACTCCCGCATCAAACAGGTCGAGCTTCCGTAACTCGACACCATATAC 4668601 37 100.0 44 ..................................... CCACTGGGGCGAAGGCGTCCGTATCACTCCACAATTGAGGGAGC 4668682 37 100.0 41 ..................................... TCCTGCTCCCATGCGGTCTTAGGACCAACCGTTACAACCTC 4668760 37 100.0 48 ..................................... TCGTACTCCTCTTGTAACTGCTCCAGGTATTCCACATACCTGAGAATG 4668845 37 100.0 41 ..................................... ACTTGTTCCATATAGCCACCTCAGCCTCATCAGCTTCCCAG 4668923 37 100.0 48 ..................................... TCGTACTCCTCTTGTAACTGCTCCAGGTATTCCACATACCTGAGAATG 4669008 37 100.0 41 ..................................... ACTTGTTCCATATAGCCACCTCAGCCTCATCAGCTTCCCAG 4669086 37 100.0 35 ..................................... CTATTTTCATATCATTCAATAATTAACAAGAACGC 4669158 37 100.0 35 ..................................... CCTGGGATAATTCCCATTGCCATATCGAACAGCTT 4669230 37 100.0 43 ..................................... AGTGCGAAGTCCTCATTCTCAAAGTTCATCGGCCCGTAATGCT 4669310 37 100.0 42 ..................................... AGCGGTGCGACCTCCTCTGGGGGCAAGTTGTCGATACAAACC 4669389 37 100.0 44 ..................................... CAGATTGCCTCAGCTTGCGGGGACATCGGATCAACTGGGAACAA 4669470 37 97.3 0 ......................C.............. | ========== ====== ====== ====== ===================================== =============================================================== ================== 22 37 99.9 43 GTCACTTATGCCCAACTCCCCGTAAGGGGATTGAAAC # Left flank : TGCCTTATATCGATCGCTGCGTGGGCGCCGGGGTGCGCTTGCACAAAATTAGCCGTCACCTGTTGCAACTGTTTGCGGGACAGCCCGGGTCGCGCGCCTGGAAGCGCCACATCAGCGAACACGCCTGTCGTCCCGGGGCCGGATCGACGGTGATTTGTGAAGCGCTCGCTCGGGTTCCTCGGGGATAAGGGGGTCGGCAGTCGGCGCGATCGGCTTCAGGTCGGGCGATCGGCGTTTTTGTAACGATTGTTTGCGCGAGGGTTGACCGATGACGGAAAGAGCTTTATGGTTGGATACAGCGATCGAGGGATTGGCAGCGAGCCTTATCTGTTTTTTCTGCAGTTACGGTGTCGTGATTACCTTCTTCCTCGTTTTTGCCCGATTTTGGGCAAATCCTCAGTCGCCAAAACAAAGCGTTAAGTTTTGTAACGGACGGCCTCCGTACTCTGGCGCAAACGCACCTTGAAAACCAGATACAGCAAGGGTTTCAATGGCATAGG # Right flank : CAATGGTGCGAAGCAGTAGGGTGTGTTATGCGGCCAGAAAATGCGAATGCTTACAAATCAATGATATTTCCGCATAACGCACCATTCCAAATCGCGCGATCGTCATAAGCCGCACATTTCCACCATCACGATCGTTTCTGACACGATCGTTGCACCCTCCACGGAACCCCGTATTCGATTTTTTGGCAACACCATCATTCATCAATGGGGTTTGTCGGTGGTGCGTTGCGGCCAGGTTAATATTTTCGTGAAAACCCATAATTTATCGATGCCGCAACACACCCTACCGGGATTTTGGGAAACACCGCCTCCACATTTCCACCGCTACGGTCATTTATAACATGATCATCGCATCATCCAAATTTCACAAAAACCCAGAAATGATCCGTTTTTTTGGGTCGGTTTTGTCTGTGTAAAACCAATATTTATTAATGGGATTTGTCGGTGGGGGCGGTGCGTTACGGCGATTTCAATATTTGGGTGAAAATTATGATTTATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTATGCCCAACTCCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //