Array 1 4227580-4224259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJKGI010000004.1 Klebsiella pneumoniae strain MS1 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4227579 29 100.0 32 ............................. AAACCCCACTAGTCTTACCGTACTTGATTGCC 4227518 29 100.0 32 ............................. GGGTTGCTGAAAATCTCGCATCACAGGCAAGC 4227457 29 100.0 32 ............................. AACGTAACCTGATTCCAGTCTGCATTATAAAT 4227396 29 100.0 32 ............................. GCCCGAACGCCGATACGAATTTATCCCGAGGA 4227335 29 100.0 32 ............................. CCTAGCAGCTCTACGGCGTCTTTTTTGCCGCC 4227274 29 100.0 33 ............................. CGCATAGTGACAATTGAGCACATTAGCGGCCAG 4227212 29 100.0 32 ............................. ATAGCCGACAGTACGCCAATGCTGGTGGAGCC 4227151 29 100.0 32 ............................. TTTTATGCTACTAAGAAATATATGACAAAATC 4227090 29 100.0 32 ............................. GCGATTGGTGGACCAGTTTCCGCGGCGTTCCG 4227029 29 100.0 32 ............................. TCAAAAAATGTTTACAGATTTAGCACCAGAAC 4226968 29 100.0 32 ............................. GTTACTGACTATTCTGGTGGCACACCAAACTC 4226907 29 100.0 32 ............................. TAATGCGGCGTCTCCGCATCGTTGAAAAAGTC 4226846 29 100.0 32 ............................. CAGCCATTCAGCAGATCCCCACTCTCCGAAAG 4226785 29 100.0 32 ............................. CCGATCGGCTTCCGTGCGCGCGGGCGGGATAT 4226724 29 100.0 32 ............................. CGTTCCGGCGTGTAGGGCGGGTCGAGTTCCTT 4226663 29 100.0 32 ............................. GGTTCTGGCTGATTTGACCTTCGACATTACAC 4226602 29 100.0 32 ............................. TCAGGGATTTGCTAGGCTCTAATCCCGTGCGG 4226541 29 100.0 32 ............................. CCTGCTTTTTTCATTTTTCGGTCAGGTTAAAT 4226480 29 100.0 32 ............................. TTCGCCGGCGCATCGCCCAGGTGAGGGCGCGG 4226419 29 100.0 32 ............................. ATAATCCCGGTTCAGTGAATAACGGGGATTTT 4226358 29 100.0 32 ............................. GCGGACTTTACTGGAGATATACCGCGCCAGTA 4226297 29 100.0 32 ............................. ACGGGTCTGACTCCAGAATCGCCGTAAATATC 4226236 29 100.0 32 ............................. CAACCCACGGGGATCCGAAATCGCCTGCGGTG 4226175 29 100.0 32 ............................. GCAGGCCTTGCATGAACTGATGACAGGCAAGC 4226114 29 100.0 32 ............................. CGTGAGTTTATGGTTTCGGTTAGGGGAAATAA 4226053 29 100.0 32 ............................. ACATTTTGGTGATCCGCATATGCGTTTCCCGG 4225992 29 100.0 32 ............................. GCAACGTTCTCAGTCAACGATCGGTTGCTGCG 4225931 29 100.0 32 ............................. TCCTGGGGTATCGTCGATGTACAGCATGTCGA 4225870 29 100.0 32 ............................. ACCCATGGCATTGGCCACATTGGTCGTCCCCT 4225809 29 100.0 32 ............................. TACGCTTTAAAAAATGGGCTGAGGGTTGTAGC 4225748 29 100.0 32 ............................. GTCATTCAGTGCTACAACCCGTCCAGTCTGTC 4225687 29 100.0 32 ............................. CAATTCCTGCCGGTGATTCCGCGGTCGGCAAC 4225626 29 100.0 32 ............................. CCCGACAAAAGTCATTGAGCTTGTAAAGGCTG 4225565 29 100.0 32 ............................. GCGTGCAGTTCTATAAGGATGGCGACGCGTTC 4225504 29 100.0 32 ............................. AAAATGTGCGAGCTGTGGGATGACCTGAATGA 4225443 29 100.0 32 ............................. AGACGCGGCAGAACCTGATCCCTCTCAGCCGG 4225382 29 100.0 32 ............................. CTTTGCCCGGTGATAACAAAATCAGCAACTGC 4225321 29 100.0 32 ............................. GAGATACCGTTTTAATTCAATACGGCGGCGGC 4225260 29 100.0 32 ............................. GGCAAAAAACGGATCCGCCACGTGGAGTGGGA 4225199 29 100.0 32 ............................. CACCAGGCCGCCGTCTTTGATGACGCGCATGT 4225138 29 100.0 32 ............................. AGGATCGGGATTTTCCCGGCGTTCCATCGCTT 4225077 29 100.0 32 ............................. CATCGGAGGTGATAAATGCAGACAATTATCCA 4225016 29 100.0 32 ............................. TTCTGGCAGGTCGACGACGACAACAATCAGGT 4224955 29 100.0 32 ............................. CGGCTGATCTGCGGCCGCCTGGATGTGTCCAA 4224894 29 100.0 32 ............................. CGCACTTTCACGATGATCATGCGTGAGGCGGT 4224833 29 100.0 32 ............................. GCGTTATATTTGTGAGTCGGTGCTGAGTCCAG 4224772 29 100.0 32 ............................. CCAGAAGAGGAGGCAACGCTGGATCTTATAGC 4224711 29 100.0 32 ............................. TGGTCAGGGCTGATTGCAATGGACCGGGCAAA 4224650 29 100.0 32 ............................. CCGAGCCTGAGTTTTGTGAACGGCCCAGCCAG 4224589 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 4224528 29 96.6 32 ..........A.................. ACGGTAATTATTTATGCCCTGGATAATATTGG 4224467 29 96.6 32 .......T..................... TCTGACTGTCGAGGCATTATGTGCCCTCCGAT 4224406 29 96.6 32 A............................ ACGGTCCGACAGAACGGCGCTGGAATCTCTCG 4224345 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 4224287 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCTTGCGGCAGGCGAAATTCAGCCACCCCCGCCACCTGAAGGCGCACATCCTGTAGCTATCCCATTCCCTGTCTCTTTAGGTGATGCAGGCCATCGGAGTCGTTAACGATGAGTATGTTGGTTGTGGTGACAGAGAATGTTCCTCCGCGACTCCGTGGACGGTTAGCCGTCTGGTTGCTGGAGATTCGCGCTGGTGTGTATGTTGGGGACATCTCAACAAAGACACGAGAAATGATATGGCAACAGGTTTCCGTTCTGGCAGAAGAGGGGAATGTTGTTATGGCTTGGGCGACGAATACCGAATCCGGATTTGAGTTTCAGACATATGGTGTGAATAGACGTATTCCGGTGGATTTGGATGGACTGCGGTTAGTATCTTTCCTTCCTTTTTTAAAACAATGAGTTATATGCTCTTTAATAATGTAAAATTGTTTCTTAATTGTTGGTGAATTGTTTTTCAGTTAAAAGCTATTGATATTGAAGTCTATTTTTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //