Array 1 180746-181459 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLQ01000002.1 Faecalibacillus intestinalis strain SNUG30099 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 180746 31 100.0 38 ............................... TCATCATATATAAGTTGTTCGTTAATTACCTTGTTTTC 180815 31 100.0 38 ............................... CATATAAAGCCCCTGCAAATCCTATACTTGCTAAAATT 180884 31 100.0 37 ............................... TTATGCCCCTTTCTCAATTCTTTCTTGATTTGTTCTA 180952 31 100.0 36 ............................... TGTTGCTAATAATATTTCCTTATTTAAGTTTGCTTC 181019 31 100.0 38 ............................... ATTATCGGCGCTTGATTGTACTTTTCTTAATTTCTTTT 181088 31 100.0 37 ............................... TATTTTTACTTTTCATATATTCATACTCTTTTTCTTT 181156 31 96.8 37 ..........................G.... AATTTCTATTGAGCCGTCGAATTCATCAATAACTTCA 181224 31 100.0 37 ............................... ACTGGTTCAAGAGCTTGTTTTAATTTACTTATTGTTC 181292 31 100.0 38 ............................... CAATTTTATTTTCATCTCAGATGTTTCTCCTTACATTC 181361 31 100.0 37 ............................... TCACCATCATTGACTAGCTGCTTTACTTCTTCTAGCG 181429 31 83.9 0 .......................C...TTTT | ========== ====== ====== ====== =============================== ====================================== ================== 11 31 98.2 37 GTTAGATATCATACTTATTAAGGATTAACGC # Left flank : CGTGAAGTTCACTTGCTTTCTAATTACATCGCTAATGAATCAAATGATTATAAATCATATATTATGAAGTGGTAAAATGTATATTATTTGTACTTATGATGTAAAAAGCAAGAACTGTCCGAAGTTTATGAAGTTATTAAGAAGATATCTTTTTCATGTTCAAGAATCTGTATTTGAAGGTGAACTTACACCAGCAGCATATAAAAAATTAACTAAAGAATTAGAAAAAATTATTACAGATGATGATCATGTAGCAATCTATTATTCATATAATTCTAAAATGATTAAGAAACAAGAAATCGGTAATTCTATTGATAAAACACGTTTCATAATAGATTAATATCGACTATCCCCTAATTACTATAAGAATTTCATTACAAAAAACTTATATTTTTGATAGATAGTCGATATTTTTAATCATTTTTCTTCTTATTTTTACATATTTTTAGTATATTAACAAATCAATTTATATTATTCATTAAATATGTTAATATTTCATT # Right flank : TTATTTCTATCTAATAATGAAAAAACTATATTTTATGTTCTTCTTTTAGTACAATGAAGTTATAAGAAAAAGGAGAAAAGTATGAGTAAAATTGTATTTTTAGATGTTGATGGAACTTTAATTGACTATGAAACAAAGTTACCTGATTCAGCAAGAAAAGCTGTTGATCAAGCCAGAGCTCATGGACATAAAGTCTATATTTGTACAGGTTGTTCTAAAGATGAAATCTTACAAAGAAATCTATGCGAGCTAGATGGGATGATTTTAGGAAATGGAACATACGTGGAAGATCATGATCATGTTATTATGCATCAAGCGATGCCTTTAGAAGAAGTAAAAAAGGTGGTTCATTGGTGTCAAGAAAGAAATCTTGCTTTTTACTTAGAAACAAATAGTGGGGTTTATTGTAATGATCAAATGATTAAAGATGGACCAGCTGTCATGATTAAATACGGTCAAGGTAAAGGTGCAGATCTTTCAAATGCAACAGAAAAGGCAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGATATCATACTTATTAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [90.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 56633-57726 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLQ01000009.1 Faecalibacillus intestinalis strain SNUG30099 scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56633 36 100.0 30 .................................... AACAACTGCTTATCAGTCGGCTTTCTTGCC 56699 36 100.0 30 .................................... TAAATAAACAAATCAGGAGGACACTATTTT 56765 36 100.0 30 .................................... GGGAATTAAAAAGGAGATTAAGAAATGGCT 56831 36 97.2 30 ..............................G..... TAGCTGTTGACGGTATTTCTTATTTACATG 56897 36 100.0 30 .................................... TATTTAAAAATGTAGACGTCCAACGGAACA 56963 36 100.0 30 .................................... TTGGGGACTTTTTACAGTTTAGGGTTTACA 57029 36 100.0 30 .................................... TCATGGGTTCAATATTCTATGCTATTTTCT 57095 36 100.0 30 .................................... GTGGAAAAGGAAGAACTGACGATTGTTTGT 57161 36 100.0 30 .................................... TCTTGATAATATGGTATTGGGCTGAAGGAC 57227 36 100.0 30 .................................... AAAGATACACACCAGTATTTTATGGCGACG 57293 36 100.0 30 .................................... TAGGCGGTCGCAAGTCCGCGTAAATAGTGA 57359 36 100.0 30 .................................... ATGACGATGCAAGGTTCGAAAAATCGTTCA 57425 36 100.0 30 .................................... TGTCATATTGATATTAATACTTGATTTACC 57491 36 100.0 30 .................................... AAGAAAAGAATGCTTCTCAACAGGCAGTAA 57557 36 100.0 30 .................................... GAAGTAGTGCCCAAGAAGAATCGTTATGTC 57623 36 100.0 30 .................................... TAAATATTAAAGATGAAACTTGTTCCATCT 57689 36 83.3 0 ................G.......A....T...TTT | T,T [57705,57719] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.9 30 GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC # Left flank : TGAATTAATATATCCAAAATTTATAACATATACACCTAAACAATTCTTAAAAATATTGTTACCAATATTTTTAAAAGAAGAAGATCAAGCAAATGAATATGATCTATCCTATGATGAAATCATTTTATTTCAACTTAAAATGATAGATTATATATCTAAACATCAAGCAACTAAAATAATTTGTCTTATAGAATTACCATATCTATCAAAAGAAATAAATGACTATCTCATAAATATGAAAAATTGCTTTATTGTTGTTATGTTTTATAAAACAAACAGTGTTTTAAATATAAAAGATACTTATATATTTGATGATTTAATAGTAGATTTAAATAATGATGAACAAATATATAATATCTATTTAAATAAAGGTGTATGCACACTACAGGAGGCAAAAGAAATGATAATAAATAATATAAAAGCTAAACTTGATATATCTATAACTCTATAAAATATTCAATATTTTATTATTTTTAAATATATGGTAACATGTATTTGAG # Right flank : TAAATGTAAAAAAAGAGATTTCTCAAGGATGCTATTTTGAAATCTCTTTTTGCTTATAAAAATATTTACATAAAATAAAAAAACAACCCGAAGGTTGTTGCTTATTAAATGGCGTCCACGAAGGGATTCGAACCCCTGACCGCACGCTTAGAAGGCGTGTGCTCTATCCAGCTGAGCTACGTAGACACTGCTTACTTTCAACTGCTCATATATATTAGCATGAATATGAAATGATTGCAATAAAAAATTACAATTTTTTTTAAAATTTATATTTTGAAGAGATATATATAAAATAAAAAACAACCCGAAGGTTGTTGATTATCAAATGGCGTCCACGAAGGGATTCGAACCCCTGACCGCACGCTTAGAAGGCGTGTGCTCTATCCAGCTGAGCTACGTAGACATTGCTTACTTTCAACTGCTCAACTAGAATAGCATATATTTTTTTAAAAAGCAATACTTTTTTAAAAATCATCTAAATTTTTGAATTCAACCTTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //