Array 1 5334-6826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUIT01000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST221_31B contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5334 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5395 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5456 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5517 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5578 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5639 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5700 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5761 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5822 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5883 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5944 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6005 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6066 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6127 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6188 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6249 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6311 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6372 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6433 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6494 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6555 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6616 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6677 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6738 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6799 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22959-24740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUIT01000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST221_31B contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22959 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23020 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23081 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23142 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23203 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23265 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23326 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23387 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23448 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23509 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23570 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23631 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23692 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23753 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23814 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23875 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23936 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 23997 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24059 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24162 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24223 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24284 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24345 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24406 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24467 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24528 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24589 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24650 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24711 29 96.6 0 A............................ | A [24737] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //