Array 1 1517186-1516060 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483487.1 Fusobacterium ulcerans strain NCTC12112 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1517185 29 100.0 37 ............................. ATAATATTTTTAAAATGTGAAGTAAGATTATTTTCTA 1517119 29 100.0 36 ............................. TTGGCATTTAAAAACTACTCAGTTAATATTCTACTA 1517054 29 100.0 36 ............................. ATTTTTCAGATATTTTAATTTCCACCTCTTCTGCTT 1516989 29 100.0 35 ............................. CAGAAATAATAAACTATATAAATTTAACTGTAAGG 1516925 29 100.0 35 ............................. CTTCTTGGAGCTTCTGCTTTAAAAAGCAGTGTAAA 1516861 29 100.0 37 ............................. AAGCATTTTCTTCAAGTTCTTTTTTACAAGTAACTAT 1516795 29 100.0 36 ............................. CTTTTTTGGGGGAAAGAGGTTGGAAAATAAGACTTT 1516730 29 100.0 36 ............................. TTATCATTTTCAACTTCCCTTGAATTCTCTTCTCCA 1516665 29 100.0 37 ............................. TTATTTCTCCTTTCTATGCACTATGCAGCAAAATATC 1516599 29 100.0 35 ............................. TAATCATCTATTGGAAGATATCCTTTGTGAAAATT 1516535 29 100.0 37 ............................. CTTCTGCTTCAGGATTCAGCATTATATCTATTCCTAA 1516469 29 100.0 35 ............................. GACCGACAAAAAGGTAGGTATAGAGCTATGGTAAA 1516405 29 100.0 36 ............................. CTGTTGTTACCTCAGGACATTCAACTGGAAAGACTG 1516340 29 100.0 35 ............................. ATCATCTAGCTCATTTACATCTGTTTCTACTCCAA 1516276 29 100.0 36 ............................. CTTAAACATTTTAAAGTTACAGGTTTTTGAGATATA 1516211 29 100.0 35 ............................. GCAGCAGGAGCTGGGTCATCAGCACTTCTAATTTT 1516147 29 100.0 28 ............................. CCATTTGATCCACAAGAGTATATGCAGA Deletion [1516091] 1516090 29 96.6 0 .........................C... | TT [1516063] ========== ====== ====== ====== ============================= ===================================== ================== 18 29 99.8 35 GTATAACAGTAACTTTGAAGTTTTTAAAT # Left flank : GAGGGAAAAGAGTTTGTTCCGTTCTCTATAAAGGAAAAGATGTAGATGAAAGGTAAAAACTATAACTATATATTTCTTTTCTATGATATAAATGAAAAGAGAGTAAATAAGGTTTTCAAAATATGTAAAAAATATTTGAGTCACCATCAAAGATCTGTATTTCGTGGAGAGATTACACCTAGTAATTTAATAAAACTACGTTTAGAATTGAAGGATATAATTGATAAAAAGGAAGATTTTATAAGCATTGTGAAACTGGTAAGTGAACATTATTTTGATGAGGAAATAATAGGAACACCTTGGAAAGATGATGAAAATATGTTTATATGATTTCCAAGTTAAAAAACAGATGAATTTATGAAGTGATGATTTTAAAGGAGAATGAGAAGAAAAAAATTAATTGCTGAATTTTTTCTCTCTCTTGGAAAAAAAGTGGTAAAAAATTCTTAAATTCTTTGTTAAGAATGGAAAAGAATAAATAAAATGCTTATTTGATGAAG # Right flank : AATGTTTATTATTTTTATCTACCCATATTAGCCTTATTATAATAATTATAGCAACTACTATTATTATTTGTAATGCTGGTGGGGCATTAAAAAAGAACAGGAGTTCTCCTAATCTTTGCAATAGGAATACCCATGCAAACCATAAGATTGCTAAACCTATCAATATATTTTTTAATAGTTTCATAATTTCACCTCTTTAAGGTATATTACCATAGTTTCAATAAATATGCTATTTTAAATCAACTAAAAAACTGCACTCTTTATCTTAGCCATCTAAGATTTTAGGTGCAGTATATTTTTATCCAGCTGAAATATTAGCAGTTCCTAAGAATTGATTTCTAAAAAACAAATACAAAATCTCAGTATCAAGAGGGCTGTATTTAACAATAACCTTTTTTCCTTCTAAAGTATTTAAAGAATTGTTAGTGTAGATAAAATTATTAAATCTCAAAGAAGATTTACTTATTTTTCTACTAGCTTCCTGAAGAAAAATATCAAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAACAGTAACTTTGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1526150-1527665 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483487.1 Fusobacterium ulcerans strain NCTC12112 chromosome 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1526150 29 100.0 35 ............................. TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA 1526214 29 100.0 36 ............................. TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA 1526279 29 100.0 34 ............................. TGGCTACATATTTACTAGAATAATCTATAAGCGA 1526342 29 100.0 36 ............................. CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT 1526407 29 100.0 36 ............................. AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA 1526472 29 100.0 36 ............................. TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA 1526537 29 100.0 36 ............................. GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT 1526602 29 100.0 35 ............................. GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA 1526666 29 100.0 36 ............................. AGAGAAATAATCATGGACACTCTACCCTAAATACAT 1526731 29 100.0 36 ............................. TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC 1526796 29 100.0 34 ............................. GAACTGATATAAACGAAATTTTAAAGGTATCTAC 1526859 29 100.0 36 ............................. GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC 1526924 29 100.0 36 ............................. AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT 1526989 29 100.0 36 ............................. TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA 1527054 29 100.0 36 ............................. ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT 1527119 29 100.0 36 ............................. AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC 1527184 29 100.0 36 ............................. TATGAAAGAGATTAAACATGATGATGAATGGCTTTG 1527249 29 100.0 36 ............................. ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG 1527314 29 100.0 35 ............................. TAATAATATAAAATAATTATTTAAGAGACTAAAAA 1527378 29 100.0 36 ............................. GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA 1527443 29 100.0 36 ............................. TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT 1527508 29 100.0 36 ............................. TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA 1527573 29 100.0 35 ............................. TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC 1527637 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 24 29 100.0 36 ATTTAAAAACTACTCAGTTAATATTCTAC # Left flank : ATTCCTTCGTTATATTATCTTTTAAATATTTCATAAAATGCTCTTTTAATTTTTCAGAAATAGTTCTTATCTGTATTGTATATATTTCTCCAGCATTATACTTTTTAGTATTAACTTTTACTGGATAAAAAGAATTAAAACAATACTCTTTCACTTTTCTATCTTTATGATACTCTTTCCAGTACTCATCCTTATCAAAAGTAGAATCTATAAAAGCAGCTATTTTTTCTATGGTTTTATATGGTTCTATATCTTCTAATAAAAAGACTTTCAATTCTAGAATCCAACTTTTCATTTAATCCCTCCCTTTTAGTCCTCAATAATAATTATACCTCATTTTTTGATAAATAATAGACTTTAATTCGAAAATTTTAATTTTTTTTATTTGGTTTATCCTCTCCTTTGATTTTAAATTTTTTAATGTGAAAAAGATTGTTTCACACTTTTTCTTTACTATTCTATTTGGCTGTTTTTTACAAATAAGTTTTTGCTTAAAGTAT # Right flank : CGCTCATAAAATCAAACTTCACAATATTTATCAATCTCTCTATTCATGATTTTATCAAGCTTTTCCTTCTTTTTTTCCAAGTGCAGTAAAATTTTTATAAAATAATTTTTTCCTTCCAAATTGCTCTTAAAATATACCTTAGAAAAAATATTCAATTTTCCAGCTTGGAAACTTCTTTATTTTTAATCTACTAAATTCACTCCATACATAATTCCTAGTGACCCTTTTTTTATCTTAATATTCATAGTCTTTTTCCCTAAATATTTATCATAAAAATCCTTTTCAATAAGGAATTTTACTTCCTCGCCATTTACATCTGCTATCATATAGTAAAAATTTATATAATATTTACTTCCTGGTTTTTTAAAATATTTTTTCTGCTCTATAATCATTTTTATAATTTTATAGTCTTTTTGCTCTCCCTTGCTCCCTATTCTATTGATAAAAAACTTTATTCTCATATAGATATATTTAGCAATAAAGCTTCCCAGCCATAATCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACTACTCAGTTAATATTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 2206927-2206572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483487.1 Fusobacterium ulcerans strain NCTC12112 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2206926 29 100.0 35 ............................. TAAGTGGTGCTGAAAAGATAAAAGCAGTAGATAAA 2206862 29 100.0 38 ............................. CAAATGCTGCTCTTCCCCATCTGTTAGCTAATACAAAA 2206795 29 100.0 36 ............................. ACAGGTTTATTTAATGGTATTTTATAAATTTTAAGA 2206730 28 93.1 37 ..............-.............A AGAAAAGAAGGTTGAAATATACCTTCTTTTTTATTTT T [2206705] 2206664 28 82.8 37 ....A..T...-..A.A............ CTTCTTTTCATTTCCTCTTTATTCAAAGTTTTCCAGG 2206599 28 86.2 0 .C..A..T......-.............. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 93.7 37 TTGACTAGTAACTTGATAAGTTTTTAAAT # Left flank : ATACCTGCTCCAGTAATGGGAGGGGTTTCAATAATATTGTTTGGAATGATTTCATCAGTAGGAGCAAGAACATTAGTAGATGCAGGATTGGATTTTTCTAACTCAAGAAATCTTATCATAGCATCATTAATATTTGTATTTGGAATAGCAGTAGATAATATTGTTATCTGGAAAACAGTTTCTCTTTCTGGACTTGCACTTGCAGCTCTTGCAGGAGTAGTTTTAAATAAGGTTCTTCCTTTAGATAGAGAAGTAGCAATAAATAAAAAAATAGATTAATTTGAAAATCCATTGATCATGCAAAATTTATGATTGATGGATTTTTTATTTTCCAAGGGAAAAGATACCAATGGAAATTAAGTTAAGAAATAAAGATATAAATAGAAGAGAAAAATAAAAATGAAAAAAATCTTTGTTTAGGTTGGAAAAATAAATATAAAGTGGTATAATTAGAGCAATGGAGAAGCTAAAGGAAAAAAGAAGTTGTGAATTGCTGAATA # Right flank : GTATTCTTTAAATATATTTTTTTGATTGAATAAATAAATTTTTAATAATGTTCTCATTATTTTTTTATAATTTTCAACATAATTATCACATTTTTTTAACATACAAAAATATTAAATTTAATGTATGTTAATTTAATTGTCGAATTTACACGAATAAATATTTTGTTTTAAGAATGTTTTAGAAAAAATAAATGTCATTAAAAAAAGAATTTTAAAAAGAAAAATAAAGATTAGTTATAAATTATAATACTTAAAATTTTTTAAAATAAAAAATCACAGATATTAAAAACATCTTTGGATAATGCAGCAATAGAAAGTATATATGAATAGTCATGGATAAATTTCTTTGGGGAAAAATACTCCTGTGATAACAATTAGGAGGGATAAAAATATAAATATTATTTAGTAGAAAGCATAATTGCTGTTGATGTAAAGTATACATGATATTTCAAGGGTACTTTAATGGAGAATTTTATTTTTTATTTTAATATAATTAGGAG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGACTAGTAACTTGATAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //