Array 1 49790-48020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LODR01000031.1 Megasphaera sp. DJF_B143 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49789 28 100.0 32 ............................ ACCAAGGATTTCCTGGAATGTGTGCAATGGCT 49729 28 100.0 32 ............................ TATCAAAACGGGCCTGAAAGAGAAAATCGAGC 49669 28 100.0 32 ............................ TGATCGCGGCGGAAACGTTGAAGTCATGGCGG 49609 28 100.0 32 ............................ TAAATCAATTTAGCATTCCGCAGTGTGTACCA 49549 28 100.0 32 ............................ TGTCAGTGAGACGGCAGAGCCTATCATAGTAG 49489 28 100.0 33 ............................ GCTAAGGCCGGTGCAAGCACTGTAAAGTATCAC 49428 28 100.0 32 ............................ TTTAGCGACCATAATATCGTGTAAATGCTTTA 49368 28 100.0 32 ............................ ACTCTCAGAGAGTTATAGAAATACCTTGTTTA 49308 28 100.0 32 ............................ TGATCCGACGTATTGAGCTGAATCATGTCCAG 49248 28 100.0 32 ............................ TAGATATTTCATTATGTGTTTTTTAGTAGTCG 49188 28 100.0 32 ............................ TATACCGTGCAGGGAAGTCGGAACATACTACA 49128 28 100.0 32 ............................ ATTTCGTATGCGTACCATGCAAGCTTATTTTT 49068 28 100.0 32 ............................ ATTTATCGGCTATTGTTAACCACTATTTCTAC 49008 28 100.0 32 ............................ ATGTTTTCACACTTCCTTGCATAAAAATATAT 48948 28 100.0 32 ............................ AGACGGTATAGTGTATAGTGCTAAAACTGATA 48888 28 100.0 32 ............................ AAAAATGGACGGCATCATGAACTGGTTCGGCA 48828 28 100.0 32 ............................ AACTCCCCGACAGCTATGCTTTACGTCTCCAT 48768 28 100.0 32 ............................ TGATCCGACGTATTGAGCTGAATCATGTCCAG 48708 28 100.0 32 ............................ TAGATATTTCATTATGTGTTTTTTAGTAGTCG 48648 28 100.0 32 ............................ TATACCGTGCAGGGAAGTCGGAACATACTACA 48588 28 100.0 32 ............................ AATGGATGATGACTTTCAACTAATGCTGGTAT 48528 28 100.0 33 ............................ TAAATTCAGACATTTTCCATGGCACGTCATTTT 48467 28 100.0 32 ............................ AGAAACATTTAAGGGGCAGAGTACAAATAAGT 48407 28 100.0 32 ............................ GCTGTACGATGCCATTTATTTTCTCTTCATCG 48347 28 100.0 32 ............................ TCCGGCATCGGGGCTATTTTGTCCGCCACTGG 48287 28 100.0 32 ............................ AAAAGGGTATCACATGAAGTTGTTCATGCGGT 48227 28 96.4 32 ...........T................ TTACACTCATCCCCTTTAACGCGGCCAGTCCC 48167 28 92.9 32 .........T.T................ AGAACCGGGGATGCACTTCATCGACCTTTATG 48107 28 92.9 32 ...........T...A............ ACATTAGGGGATGCCGCTCCAGGAAATTGCTA 48047 28 92.9 0 ...........T........T....... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.2 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATCTGCAGCGTTTGAATCTGACCGATGCACTGATGCGTTTTGTCCCAGATTACGTGAAGATTACGACAATCCGTCAGGTCCCTATCAGAAAATGTAAGGGATACGTGACATACAGCCGATATCAGCCGGAAGCTACAGTTATGCAGAAAGCTAGACGCTATGCAAAGCGACACGGTATTTCAATAGAAGAAGCGCAAAAACTTTTTCCCACGGCTGTCAGTAAGAATCGCTACCCGTATATCCAGCTGGAGAGCATGACCAATCACCATCGTTTCAGCCTGTTCATCCAGAAGCAGGAAGCTGTAGAGCAGCCATGCAACGGTTTTTCTGCCTATGGATTCAGCAAGAAATCGTCTGTTCCTGATTTCTGACCAAAGTTTTTACTATGTACCGGAAAGCCTTGTAAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGCATCAGGATATTCGCATAAAAGCCTAC # Right flank : GTAGACAGCTCCTTTACCAGTGACAGCGATTCGTTAGCCGTTCTTATCGCCTTTTGTGCTCGGAGATTTTGCCGTTGGTAGAAATCCCTTAGTGTAACATAGTTCTAAGTGAGACTTGCCAGAAAGAAGACCCTGATAATAATGATAGGTCATTGCAACGATTTCATTATTATCAGAGTCTTCTATGAAAACTATTGTAGCAGAAATCACCAGAACAATAAAAAATTCAGGTATAGTGATAGTGTCAGGAAGGTGTAGGCATTTTTGGAGATGAGAAAAAGGATTTTGGTATAAAGCTGCATAATATGCTGATGGCCACCGTTTTCTACTAGTCGCATCCATCCGCCCATCAAGGTGGATTCACGGTCTGGCATATGATTTGCTTTTTCAGGAATGTAGGTGCAGTCCTTTAATTTCCGAAAATTCCATTCTTTTTTCAAGACTTTTCGATTGATGTTCACGGGAGTTTGACACCTGCAACCGGAAAAAAGTGCCACGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58762-58434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LODR01000031.1 Megasphaera sp. DJF_B143 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58761 28 100.0 32 ............................ ACAAAGACGCATCAAAATCTACAGTAACCGTA 58701 28 100.0 32 ............................ TAGTAAGGTAAACAAGGTGTTTCCATAACTCT 58641 28 100.0 32 ............................ TATCAGGGCGCATTTGGCGTAGTCAATGCCAA 58581 28 100.0 32 ............................ TAGATTTTCTGCTGGGACAAATTCAGTATTGA 58521 28 100.0 32 ............................ TTAGTCATCTAAGGTATTCGCTTAAGTCCACT 58461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAGCAAGGAACCGGTCAGATTTTTCTATCGATTTCTGGGATAGTGCAAAATAGTTCTTGGTAAGACTTGCCAGAAAGAAGGCCCTGATAATAATGATAGGTCATTGCACCGATTTCATTATTATCAGGGCCTTCTATGAAAACTATTGTAGCAGAAATCACCAGAACAATAAAAAATTCAGGTATAGTTATTGAACGGGATATGGCTATGAGGCATTTCAGGAACTGGCAGCAGGGGGCAAATGGCATGAGCACCAGCGGGATGTATATCATGCACACCGCAAGGTGAAAGAACGGCTGCATTTTACCGCACCAAAGGTAAAGTGATGAAGCGAGTCCCTATATAGCTTCATAAAGGCGTGCATTAAAGGAAAGACTGAAAACTTCTTGACACTAACCTTGTAAATCAAGGCTTTTGACAAGCGTATAAAATTTTGGTTAAATAAGAGTAACTTGATGCAAGCTTAGATAGAATCAGGATATTCGCACAAAAGAATACT # Right flank : GTTATCGATGGCAATTAATTTTGTGCTATTGCGAACCAAGTTTTGTATGGTAGGGACGTGCCTGCTATGGTCATGTGGAAATACCCTAGGATGTGTTATCTGGGACAGTTCCTATGCACAAGGATACTGGCTGTGTGTGATTTTTATGGCACTTTTGAAATGTAATGAACGAATTATTATACGAAATAATGAAGGTGATGTCATGACAAAAGCAGAAATTGAAGCATCGAGTTTAAAAGTTATTCTACATTCCAAAAGGGCCAATATCTATTACCTGGAAAAGTGCCGAGTCATGCAGAAAGATGGACGTATACTTTATCTGACAGAAGGGAAGCGGGAAAATCAGTACTGGAATATACCGATTGCTAATACGACGGTGCTGCTGTTGGGAACAGGTACATCCATCACGCAGGCCGCTATGCGGATGTTAGCTATGGCGGGCGTCATGGTCGGGTTTTGCGGCAATGGGGGAACGCCGTTGCTTTCCGGTGTGGAAATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //