Array 1 97300-94650 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHF01000038.1 Klebsiella pneumoniae strain K68-73 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97299 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 97238 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 97177 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 97116 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 97054 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 96993 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 96932 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 96871 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 96810 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 96749 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 96688 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 96627 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 96566 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 96505 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 96444 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 96383 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 96322 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 96261 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 96200 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 96139 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 96078 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 96017 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95956 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95895 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95834 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95773 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 95712 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95651 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95590 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95529 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95468 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 95407 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95346 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95285 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95224 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95163 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 95102 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 95041 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94980 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94919 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94858 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94797 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94736 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 94678 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119581-120095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHF01000009.1 Klebsiella pneumoniae strain K68-73 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119581 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 119642 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 119703 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 119764 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 119825 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 119886 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 119946 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 120007 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 120068 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //