Array 1 24124-23758 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKH01000158.1 Helicobacter cinaedi strain PAGU628 entry158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 24123 37 100.0 29 ..................................... AATTACTCGGAGTCCTCGCTTCACGCGGA 24057 37 100.0 29 ..................................... AAATGTGAAGTGTGTGGGAATAATATTAA 23991 37 100.0 29 ..................................... CTTGCGGACGAGATTTCATAGAATCTTTG 23925 37 97.3 29 ....................................T TTTAAAATTTTAAGCCCTTGAGATACGCG 23859 37 100.0 29 ..................................... GCTCCTCTTTTGAAGCATTCTCATTTTTA 23793 35 86.5 0 ....................A--.........T.T.. | T [23764] ========== ====== ====== ====== ===================================== ============================= ================== 6 37 97.3 29 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Left flank : | # Right flank : CTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 15256-18339 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKH01000169.1 Helicobacter cinaedi strain PAGU628 entry169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 15256 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 15322 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 15388 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 15454 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 15520 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 15586 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 15652 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 15718 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 15784 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 15850 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 15916 36 100.0 30 .................................... GCAGAAAACGTCGATTTTTTATTCGCAGAC 15982 36 100.0 30 .................................... CTTGGACACTCACATGCATACATCATATTT 16048 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 16114 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 16180 36 100.0 30 .................................... ATATTTCCTTTTATGCTTGTGTATTCAATA 16246 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 16312 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 16379 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 16445 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 16511 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 16577 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 16643 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 16709 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [16723] 16776 36 100.0 30 .................................... GTCCGCATTGCTTTTCTTTTGAAATAAGTG 16842 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 16909 36 100.0 30 .................................... AGTTTCATTTTGCGGATTTACCTTATAAAA 16975 36 100.0 30 .................................... ACCCCTATTTCACACATCTCGGCGTTTCTC 17041 36 100.0 30 .................................... TCATTTGCCCTAATTAATTCTACGCTGTCG 17107 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 17174 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 17240 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 17306 36 100.0 33 .................................... AAAGACTTCTAGCAGATTCTAATTTTGAGATAA 17375 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 17442 36 100.0 30 .................................... TTGATGTCGGTGCTTCCTTATAATATGTAT 17508 36 100.0 30 .................................... TGCTACTGCTTTGCAAAGAATGCAAGAAGC 17574 36 100.0 30 .................................... CATTCGGAAACCGACACGTCGACTGCCGCG 17640 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 17706 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 17772 36 100.0 30 .................................... GGTCTCGGCCAAGCGCTAGAATCTCAAATG 17838 36 100.0 30 .................................... ATCTCTAAAATCTCTAAAACAATCGCAAGG 17904 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 17971 36 100.0 31 .................................... GCGGTGATAATTTTGGCGGTTCTCAAGCTTC 18038 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 18104 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 18170 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 18237 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 18304 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 47 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 34-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKH01000026.1 Helicobacter cinaedi strain PAGU628 entry26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 34 30 100.0 36 .............................. TCCGCGTGAAGCGAGGACTCCGAGTAATTTGTTGCA 100 30 100.0 36 .............................. TAAAGCATAGTAGATTCCAAGTTTGCAGTTGTTGCA 166 30 100.0 36 .............................. TCCGCGTGAAGCGAGGACTCCGAGTAATTTGTTGCA 232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 ATCCCCTCACAAATCGGGTCCCACTAAAAC # Left flank : ATATTATTCCCACACACTTCACATTTTGTTGCAA # Right flank : | # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCTCACAAATCGGGTCCCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 159-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKH01000053.1 Helicobacter cinaedi strain PAGU628 entry53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 158 37 100.0 29 ..................................... GCAAGAGTTTCTTTTAAATAAAGATAGTA 92 37 100.0 29 ..................................... AAATTACTCGGAGTCCTCGCTTCACGCGG 26 26 70.3 0 ..........................----------- | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 90.1 30 AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : AATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGT # Right flank : G # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //