Array 1 55091-55599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIL01000065.1 Enterobacter cloacae strain 405_ECLO 610_56010_837753_457+,...,82+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55091 28 100.0 32 ............................ AGCAAAAGCGGAAGTTGATGCCACTTCCCCTG 55151 28 100.0 32 ............................ GCCGCAGGTAAACAATAGCGGCCCGGTAAATA 55211 28 100.0 32 ............................ TGTAGAAGTCGTGCGCAAACCAACTGAGTACG 55271 28 100.0 32 ............................ AGCGCGGATAGATGAGGAAACAATCGCCTGAC 55331 28 100.0 32 ............................ GTCACCGTGACGGACCACCACGCGCTTGTGAC 55391 28 100.0 32 ............................ TACGCCTTGTCAATTCGCTCCTGATTCTGAGC 55451 28 100.0 33 ............................ CCATGCAGCTAATAGCAAGTGCGGTTGAGGAAT 55512 28 100.0 32 ............................ AGTCGACGCGTTCTGACGTTGCCAGGGTGAAC 55572 28 82.1 0 .....................AACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGTGCACAAGCTTTTTGGCGGCGTGGGCTTTATCAGCGGCATGCTGGTGGAAAAAGGATTGCCTGGATTTATCGCCTACGGCGTGTTGGTTGGCGAAGTGCTGGTGCCAGTCCTGATTATTATCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATTGTGGCGTGGCTGATGGTGGGAATGGGCGAAACGTTCGCCCTCGATAAGGTTGGTGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGTTACGCGGTGGGGAAAGACCCAGCGTGGCGTTGAGGTTTGGGCTCGGGTATGAAGGAAGGGGTCTACGGACCCTTTTTTATTGGCTATTTGTAACTCATTGATTTTATTGTGCTGAAATGTATGCAAAGAAAAAAAGGGGTTGAGACGATTTTTTTAGGTAATTTCTTTATCTGACAAGATGATAGGTGTAGATTGTTCCA # Right flank : TCTAGTTCGGTCAAACACTGTGCTGCCTGTTTATAAGCCCGGTGGCGCTAGCGCTTACCGGGCCTACGAAGAGCCTGCATGGATAAAGTAGGTCGGGTAAACGCAGTGCCATCCGACAAAAAGCCTGCATGTAAAAAGTAGGCCGGGTAAACGCAGTGCCACCCGACAAAAAGCCTGAATGGATAAAGTAGGTCGGGTAAACGCAGTGCCACCCGGCAAAAAGCCTGAATGGATAAGGTAGGTCGGTTAAACGCAGTGCCACCCGACAAAAAGCCTGAATGGATAAGGTAGGTCGGGTAAACGCCGTGCCACCCGGCAAAAAGCCTGAATGGATAAGGTAGGTCGGGTAAACGCAGTGCCATCCGACAAAAAGCCTGAATGGATGAGGTAGGTCGGGTAAACGCAGTGCCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63026-62340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIL01000064.1 Enterobacter cloacae strain 405_ECLO 609_76060_1106262_456+,...,506_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63025 28 100.0 32 ............................ AGGAGCGAGGCCTTGACCTCTGGAGTCAGGTG 62965 28 100.0 32 ............................ ACCCGCTTCTTTAAAGAGCAGTTCTTCACGCC 62905 28 100.0 32 ............................ TAGAAGAACACCGCTCTCACCCATCAATAAAT 62845 28 100.0 32 ............................ ATCGCGTCAGGGCAGTTTAAGGCTGCCGCCGC 62785 28 100.0 32 ............................ CATCCACGTTGCTTGCATGCCTTAAACAGCCC 62725 28 100.0 32 ............................ AGCCGCGCTTCACCAGTAGCGGTTCAAGCGTC 62665 28 100.0 32 ............................ AAATGAAAGTTCTTTGCCAGAGAAATGGCTGG 62605 28 100.0 32 ............................ AGGGCGAAGGGATGCAGCTGGACTGGAAGGGC 62545 28 100.0 32 ............................ AGCAGGTATACAGACGGGCGACCGGATGCGGG 62485 28 96.4 32 .......A.................... AAAGGGATGGATGCCGGACAGCCTGGCGGTAA 62425 28 92.9 30 ..............CC............ ATAGAAAATAAGGTCTCTCCCCCTTACTTT C [62400] 62366 27 78.6 0 C.......T..A....A....C.-.... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGTTCGCTTTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATTCCGGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGAATGTTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAACTCAATCAGCCGCATCCCCCTGTTTGCAGGTAAACCGGCGTAGCGCCAAAGCGCGTTATCAGCAGGTTGCTGGGCGGGGATCCATGTTCTCATGTTACCTCCGGATTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCAGGTAGAGTGGAATGGCGTTTTTTTATACTGGGTGGTTTGAGAGAAGAAGGGCGTTTGACCCTAATTTTTGGAGTGTTTGTAATGCATTGATATTAAATGGATATTTTGAGAGGGTAAAAAAGAGGGTTAAAGTAGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGGAGATATTATTTCA # Right flank : CGAACCGCCAAATAATTGCTCAAATAATCAACTGCACCACAAAAAAATAAGGCCGGGAAAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACGACAGGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73777-72968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIL01000064.1 Enterobacter cloacae strain 405_ECLO 609_76060_1106262_456+,...,506_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73776 28 100.0 32 ............................ GCGCAGGCTGGCTTTGATGAACGTGAAATCGA 73716 28 100.0 32 ............................ GCTGGAAAGTGGCTTATTCAGTTCATTTCGTT 73656 28 100.0 32 ............................ TCTCTCGCACCGCGTGGTGTATGGCCGACATT 73596 28 100.0 32 ............................ ACGAGCCAAATCCAAGGATGTCATATGGGTTG 73536 28 100.0 32 ............................ AGAATTGCCGCCAGGCGCTTAGAGTTGACGAA 73476 28 100.0 32 ............................ TTCAAAATGCAGAGCCGTTGTGCAGCAGCCAC 73416 28 100.0 33 ............................ GTCCGGCGCAGTGTGGATTATGTCATCTTCTAA 73355 28 100.0 32 ............................ TTCAGGGTTGTCCGGCGTAGGTCGCCCGGTCA 73295 28 100.0 32 ............................ GATCCCTAAACGTTCGATCGCTTTCTCGACGG 73235 28 100.0 32 ............................ GGTCTTAACGCGCTGCCGTCCTCATCGCAACT 73175 28 100.0 32 ............................ CGCCCGCATCGAGAGGAGGTAAAAGCCCTAAC 73115 28 100.0 32 ............................ TGAATACCCCTGAGAACGAACGCAGCAATGCC 73055 28 100.0 32 ............................ TGGTCGATGGTAGATTTGCGGTTACGAGCCAT 72995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTCCTCAAACTCAGCCCGTATGCCGTTGCCTTGGAGCTTACCTGGAAGAAGTAAAATCCGGCCTTACAGAATCCATGCGTGATTTTCAGGTGGTGGAATTTGAGGATGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACCGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGGCGAATTTTGACGGCGATATGTTGCCGCACATCACCGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGACGTCGTTGCGCCTCGAAATGCAGAACCGGTAATTCACATTATTTCCTGAGTTCGGGCCCAGGCGTCGGGGGCATTTCTCTGACGCCGTTGGCGTGACCCTTTTTTTTGGTCTATACGTAACGTATTGATTTGTCTGGTGCGGATTTACGTGCCAGAAAAAAGGGTTTTATGCGTATAAGTTGATTATTTTGTTTGCTAACAATAAGATGGCGTGGTTTCTTTCCA # Right flank : ACGCGCGGCACTCCGACGTTAACTGCCCCACACCACCCTTCTCAAACCAACCCACTCTAAAATATTCACCAACCCAATTTAAAACCTCATCCTATCAAGCCCGCACTCTCTATTTTTCATAAAAAATAAAAAACTCATTCACAAACAAATTATATTCTAACGAATATATTATTCGCAAAAATAATACTTCAGCTAAAAACCTGATTTTTCATCGTATTCTCACGGTGATTATTATTCATTTGATACCCGTCACATTTGTTTTTATCCGTTATTCGCTAACATACTGCGCATTCAACACCCTGAAATAAAAGCCCTTGCCATGCCCGTAAACAGCATCACTCCTACAGAATTAAAAACCATTCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAGAAATGTCGTGTTCAGGTGAATGGTGGACGTGTTGAATATGTGACTCAGGAAGGGAAAGAATCATTTTACTGGAATATTCCCATCGCGAATACGACTGCGGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //