Array 1 58-1225 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFX01000013.1 Geothermobacter hydrogeniphilus strain HR-1 NODE_13_length_87277_cov_185.526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58 28 100.0 32 ............................ TTTGACGGGCTGGTCGGTGGCGTGGTGGACTT 118 28 100.0 32 ............................ GAAGAGGGCGCGCGGGGTCCATATCAGCCCCC 178 28 100.0 32 ............................ GGTAAAGCGGCCCTCGTAGTCCTGCACGTCCA 238 28 100.0 32 ............................ TCCACCTACTGCCCAAGATGCGGAGTGTCGCC 298 28 100.0 32 ............................ TTTGACGCCGCCGGTGGCGTCGAGTTTGAATC 358 28 100.0 32 ............................ ATCCAGGCCTACACCCAGCTCGCCGCCTCGGC 418 28 100.0 32 ............................ TCGGCAGCCTCGCTGAAATCACCGACCGAGTC 478 28 100.0 32 ............................ TTTTTCGGGCGGCCCGATCGGGATCGGGTGGT 538 28 100.0 32 ............................ TATAAGGGAGCCCATTATATAGCGGACTACGC 598 28 100.0 32 ............................ CTGATCCGCTCCTGCTCGGCGCGGCGCTCGGC 658 28 100.0 32 ............................ TCCAGCGCAAGCAGGCCCACGCCATCATCGAC 718 28 100.0 32 ............................ TGCGAGTGTGAGACAGGACCACGCTTGCCATG 778 28 100.0 32 ............................ CAGAGTCTCTACCGCCGAGCGCTCGGCTACTC 838 28 100.0 32 ............................ TGACGGATGAGCCCAAGCAGGCAGGTCGATGT 898 28 100.0 32 ............................ AGGGCGGTGATCTCTTTCTTGAGCATCTCAAG 958 28 100.0 32 ............................ TATAAGGGAGCCCATTATATAGCGGACTACGC 1018 28 100.0 32 ............................ ATCAAGGCCCACGACGACGGTTTCATGCCGCA 1078 28 100.0 32 ............................ GTCGAGGGCCAGGAGCAGGCAGACGAACGCAT 1138 28 100.0 32 ............................ GTAAGCGGCGGAGAACAACAGCGCCGGTCCTG 1198 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTTCGGTTAGCACAACCCCTGTTTGCTGGTCAATTTTAGGTTAGCATTACTAGGTG # Right flank : AATAGCTCCAGGAGAAGGACGATATTCCGCAACAGGTCTATGCTGCCCAACCCCGCAGCGCGTTTTCTGCTATCCTTGAAACTCCATATCATCACCGTTGCCAACCCGGGATAACGGTTTTTTTGAGGTTGTATGCACTTTCACCATCTCTTCTCCGCCCTCGCCATTGTGCTGCTCGGCTCCCTGGTCGGCGGCCGCCTGGCGGCCCTGCTGCGCCTGCCGCGGGTCACCGGCTACCTGCTGGCTGGCCTGCTGCTCGGCCCCTCCTGCGCCCAACTGCTCGGCCTGCCGCCGCTGCTGGCCGAGGACGCGCTGCGGGAACTCGACGTTCTCGGCAATCTCGCCCTGGCTCTGATCATGGTCAACATCGGCGGCCAGTTCCGTACCGACCATCTGCGCCGCTACCGTCACCGGATCGCCATCTTCTCTCTGGGAGAAACCGGGCTGACCTTCATCCTGGTGGCGGTCTGTTGCTTCCTCGTCAACCAGCTGCTGATGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60255-57893 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFX01000006.1 Geothermobacter hydrogeniphilus strain HR-1 NODE_6_length_128042_cov_176.796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 60254 32 100.0 34 ................................ AAGTGATCGAGGAATGTCGGGCTGCAGCCGGTTG 60188 32 100.0 35 ................................ AGATTGCGACAGGCAGGCCCGCCAGAAACGCGGCC 60121 32 100.0 34 ................................ TCCCCCAGCTGTCGGGGTCGGTGAGGTGGTAGGC 60055 32 100.0 36 ................................ GACGATGAGGGTCCCGCGCTTGACGCCTCTGAAGGG 59987 32 100.0 35 ................................ GCCGGCCACCGTGTCGATCGCCCGATACAGGTCGC 59920 32 100.0 34 ................................ CCGGTGGTGGTGTCGATTTTGACGATATTGTCGG 59854 32 100.0 35 ................................ GTCCAAGGTGATGCCGGTGACGTTGCCGCTGCCGT 59787 32 100.0 34 ................................ GTCCCGCCCGACAATCGGCAGCCCCAACTGGGGC 59721 32 100.0 34 ................................ TTGTCCGCCGAACTGAACACGTAAAGCAGGGCCG 59655 32 100.0 34 ................................ GCATTCGGTTGCGACGGTGATATGGGCCTGTATC 59589 32 100.0 36 ................................ TGGCCCTGGTTGGTCTCGGCGCCGACGATGAGGCGT 59521 32 100.0 34 ................................ AGCCGCGATAACCATCCTGATATCCCTGACCGCG 59455 32 100.0 35 ................................ AACCGTTTCTCGCTGGCTGTCTGGGAAAACCGTAC 59388 32 100.0 33 ................................ AGCGCGGCGGCCATCTGTCGCACGTCATACCCC 59323 32 100.0 34 ................................ CACGCTCGGCAAAAAGTCGTGGCGTCGCCGGTTC 59257 32 100.0 33 ................................ TCGATGGTCACCTGGCCCTTGTCCTCACGCTGC 59192 32 100.0 34 ................................ ATATCTAACCTGAAAGGATTTAAAACAATGACCA 59126 32 100.0 35 ................................ CAAAAGATCGCCAAGGAAGCAGGCCTCACCCAGGC 59059 32 100.0 34 ................................ ATCTTCGACAACCTGCGCGATCAGGACCTTGCAG 58993 32 100.0 34 ................................ ATTTTAAGTGCGCGGAAGTCGTCGAAAATGCTTA 58927 32 100.0 34 ................................ GCTATTGCTGTAGGCGTGTCCCCTTCAACCGTCT 58861 32 100.0 35 ................................ TTATTGACGAAGGCCGTAGTAGCATGAGGAGATCT 58794 32 100.0 33 ................................ ACACTCGACCGGCATTAATCGTCTCACCGCAGA 58729 32 100.0 35 ................................ ATGGCTGTTCCGGCTGACACTCACCCGGTCAGAGC 58662 32 100.0 35 ................................ ACTGAGCAAACCATTTGAAGAACACAACCAAAAAT 58595 32 100.0 34 ................................ TTGGTCGTTGTAGATCATTTCTCAATGTCCTTTC 58529 32 100.0 34 ................................ CACGCTGTCGGCAAATCCTGCGGGCCTGCGCCCT 58463 32 100.0 35 ................................ GTGGCAAACAGTCCTGACCATGTCACTGAAGAACG 58396 32 100.0 35 ................................ TAGTGGTCACACCTGCCAGCGTGGCAAGGTCCTGC 58329 32 100.0 34 ................................ AGCAATAGTGTTCCTTAATAGTTCACGGATTGTG 58263 32 100.0 33 ................................ GTGCTGCGGGCTTCAATGACCGCCAGGTTTTCA 58198 32 100.0 38 ................................ GAGGCGACACAAAACTATTTTGCTACACAGATAATCGT 58128 32 100.0 35 ................................ ACGCGATCACCTCCCCGTTGATCTTGCCGTGGTTG 58061 32 100.0 37 ................................ CCTAAATCGGCCGGCAGTGGTCGTCTCCAGGGAGGTC 57992 32 100.0 36 ................................ CTTGCTTGGCCATACTTTGACGTTGGAGCAGGGGCT 57924 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 36 32 100.0 35 GTCGCCCCCCTCGCGGGGGCGTGGATTGAAAC # Left flank : CGACGCCTATCCACCTTTTCTCTGGAGGTAGACCGATGATGGTTCTGGTCAGTTACGATGTCGCGACTTCGGACCGGGCTGGGGCGAGACGATTGCGTCGGGTAGCAAAGATATGCGTGAATCACGGGCAACGTGTTCAGTTCTCGGTTTTTGAATGCCTGGTTGATCCGGCCCAATGGGTTAAATTCAGACAGCAGCTGATTCAGGAAATTGACGAAGAACGGGACAGTCTGCGTTTTTATTTCCTCGGCTCCAACTGGAGGAAGCGGGTAGAACATGTCGGCGCCAAGCCCGGCATCGATCAGGAAGGGCCGCTCATCGTGTAGCGAACCCCAAGTGAGGGCGGTTTGACCGGGAGGTTCGCAAATAATCCAAGGCCTTAATTCTCAGATCTTTTTTAAAAATTCCGGACAAGGCAGTGAACAAATCACCTACCTACTCGGAAGGTTCGCAAAAGCAAGCTTAAAAAGCACCCGATTTTAGCAAGTTAAAGCAACACT # Right flank : AAGCCGACAACCTGATCATCACCCCCAGCGCGCCGGACGATCACCAGAATCGCCCCGACATCAACAGCCACCGTTGAAAGCTTGATTTCTCCCTCAAAACAGCGCACATTCTGCGGATGAATTCTCCCGCGACCACTGCAGCAGACAACCGCTCCCGGCAGGGCGTCATCCTCGGTCTCGCCGCCTACACCGTCTGGGGCTCCTTCCCGATCTTCTTCAAGGCTCTGACCGGCGCCGCGCCGCTGGAGATCGTCTGTCACCGGATCTTCTGGTCGGCGGTTTTCCTCAGCCTGCTGGTTCTCCTCCGCAGTCGGCTCGGCGCCATCCGCCGGGTCTTTGCCGACCGGACGCTGCTGCTGACACTGTGTGGTTCGACGCTGCTGATCGCCTGCAACTGGCTGGTCTTCATCTACGCGGTGCAGGTCGGCGAGGTGCTGCAATCAAGCCTGGGCTATTTCATCACCCCGCTGCTGAGCGTGCTGCTCGGCTTCCTCTTTCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.00,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //