Array 1 93674-89963 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHJ01000011.1 Flavobacterium columnare strain CC1803 NODE_11_length_98454_cov_250.767812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 93673 35 86.1 86 AA.A.-C............................. AATTCCATCTTCTAAATCAATATCTTACTAAAATGGTTTACAAACACCTAGTTACTATTTGTTAGAGGTGTGTTTGTGAATCTCCC 93552 36 97.2 30 .....C.............................. TGATTATAAAAAACTCGGAAACTCTTGCCC A,G [93544,93548] 93484 36 100.0 30 .................................... AATACATCTAAATAATCTTTTAGACGCCAG 93418 36 100.0 30 .................................... TTCTATTTCTAAAACCCCATCTTCTATTAT 93352 36 100.0 29 .................................... CGCGAGACCTAGTTCTATTGCCTGCACGC 93287 36 100.0 29 .................................... TCGGCGGTAAGAAGAAAGAGGGCTTGAAT 93222 36 100.0 30 .................................... GTCTACAAATCGTTCTACTAGTGTTTCAGT 93156 36 100.0 29 .................................... ACGCTTCTAATTCTGAACCATATGTCCCC 93091 36 100.0 30 .................................... ATTTCGCTTAATAATATCTTTGCAAAATTA 93025 36 100.0 29 .................................... CCGTCCGTACAAGTAGTTCCAGAAACATC 92960 36 100.0 29 .................................... TTTTTCTGAAAACTAGCAAACCACAAATA 92895 36 100.0 30 .................................... CATAAAAAGATAAGACATGAAATTTCCATC 92829 36 100.0 30 .................................... CTTTTCCGTAAACAATAGGAGTTTCATTGA 92763 36 100.0 30 .................................... CTATTTGCAATAAGGCAGGAATAATAGTCG 92697 36 100.0 30 .................................... TTATTACTATTAACGTAGAAGGTACCACGA 92631 36 100.0 30 .................................... TCAGGAAGAAGTTTCCGCATCCATCTGGTT 92565 36 100.0 29 .................................... CTCAAGAACTTTTGGTGACTCACCAGTTT 92500 36 100.0 30 .................................... TTGTATTTTGTTTTTAGCTTGAATCTTTTT 92434 36 100.0 30 .................................... TAAGGCCCTTACATTAGCTCGAAAGGCTGA 92368 36 100.0 30 .................................... GTTTTGGTTAAACGAAGTTTAACACGTTGA 92302 36 100.0 30 .................................... TGTTGGAACAAATGTATTAGCGGGAACCGT 92236 36 100.0 30 .................................... TCTCTATTTTATCAACTACTTGCATAAGAT 92170 36 100.0 30 .................................... GGCTTTTCTTACATACAACACCTCTTTATT 92104 36 100.0 30 .................................... ATTAGCATGTTCTAAAGCTAAATTTAACAT 92038 36 100.0 30 .................................... GAAGGATGATCCAAAAATGAAAAAATACAT 91972 36 100.0 30 .................................... AAATTTGTACGAGGTTGATGAGTTTAAATT 91906 36 100.0 30 .................................... AATATAATCACACGGCGCAGCTATATAGTA 91840 36 100.0 30 .................................... TTGCGCCTTCTAAATCCCCCAAAACCAAAG 91774 36 100.0 30 .................................... GGTCCGTGCCAGCAATTGTGTGAAGTGTCT 91708 36 100.0 30 .................................... TTGCTTTCAGGATTTTCTCATTCAGGTAAT 91642 36 100.0 30 .................................... AAATCCCCTGAAGGGAAAGTAAATTTACTA 91576 36 100.0 30 .................................... TTCATTTTGTCCCCTATTGAAGCCGAGGAG 91510 36 100.0 30 .................................... CATGCTCCCAGCGTATACGGCAGTGGAACA 91444 36 100.0 30 .................................... TTGTTAGGGTTGCCGGATAAATATGCTATT 91378 36 100.0 30 .................................... CATAGCTGAAGGAGTAAACTAACTCTTGTC 91312 36 100.0 30 .................................... AAGCAGGAATTTATCGTAATAGGAGTTAAT 91246 36 100.0 30 .................................... CAACCACTTGTATATTTTACGACCATTCCA 91180 36 100.0 29 .................................... TAGGCATTCAACGTGATTTCAGTAGAATA 91115 36 100.0 29 .................................... AAACTTTGGATCGAAGAAGTTGCACTGAA 91050 36 100.0 29 .................................... CAGAATTAAGTATCTTTTCATCTGATCTA 90985 36 100.0 30 .................................... TAATCATCTGTATTGTCAGTTCTTACGATA 90919 36 100.0 30 .................................... TTAACATCAATAACAAGCGGGTCGATATAC 90853 36 100.0 30 .................................... TCAATTACCCAAGGAATAATCTCGTTCACT 90787 36 100.0 29 .................................... TTTTGCTGTCCACGTCATCGACTACAATG 90722 36 100.0 30 .................................... ACCGTATGAAATGCTTTTCACCTCGATAGG 90656 36 100.0 30 .................................... CGAACTGCGTAAGCATCTTGCTACTGCGCC 90590 36 100.0 29 .................................... ACGCTAGCTGATGCTAATGCTCCAAGAAC 90525 36 100.0 30 .................................... CTTTTGGTGTTTTTATTTGCTAATACTTCT 90459 36 100.0 30 .................................... TTTCTTGCATAATGAATTAGTATTTGTTTA 90393 36 100.0 30 .................................... ACTATGCTCTTGGATTTGAGCGATAAAGTC 90327 36 100.0 30 .................................... TGAGTAGGTGCCCACGAATGCGCCGCACGT 90261 36 100.0 30 .................................... TTTAAATTCAATAACAAGTACAAGAGACTC 90195 36 100.0 29 .................................... TTAACAACTACTGCCTTACTTTGGATGGC 90130 36 100.0 30 .................................... TATGTAAGTCAAAGCTGGTGCGCCAAACGA 90064 36 100.0 30 .................................... GTTGGCATATCAGGATAAGCAACTTTATTA 89998 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 56 36 99.7 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TAAAAGATAAAGAATTAGTTAATAGACTCTATAAAGTGATTGCATTTGAAAGTGATGGAAGAATTCAATTTAGGCATCACAAAACAGCTTTGCAACAAAGTAGTACAAATAAAGAAGAGCTAACTATAGTAAAATTTATGGCAGATAATGGGTTAAAAAATTCTCAAATTGATTTTACAAATCCATTGCCTTGGTTAAGATTAACAATGTCTAATTTTAACTTTTTGTTGAATAAAAAAGAGTTTGAAATTAACTCAATAGGAAAGATTTCATTTTATTAATAGAAATAAATACCAATAAGTAATTTTAAAATACATCATGTTTTTAAAACTTATAAAGCTTAGAAGTTCATTGACATTTTAGTTTTTATATATTTTTAGGAGTCAAAATATTAATATTTAATGATATAACAATTTACTGTTTTTGATTTGAGTTTTATTATTGGATCGGTGTTGTGGTTTACAAACACCAAGTTACTATTTGCTATAGGAGTGTTTGTG # Right flank : AGTTGAGGTGTAATCTTCTGATATTAAAAGAATTAGTTTAAAATATCGTTTTAAAAAATGCTTCTTTTTTGCCTTGATTAAGCAAGATTGAAGCATTTTTTTGTTTCTAAAATAATTCTAATTGAGAGGGTTGTGGTGCGGTAGGAACCTCTGTTTTGCCCCAAAAGTTTTGAATGTTACCAAATTGCTTGTCCGTAATCCGTAAAATACTCACTTTGCCTAATGGAGGCAAAAGTTTATAAATGCGTTTTTCGTGTACGTCAGCACTTTCACTACTAGCGCAATGCCGTATGTATACTGAGTACTGCATCATATTAAATCCATCTTTAAGTAAATTGTTTCTAAATGAAGAAGCATTTTTGCGATCCTTCTGGGTATCCGTTGGTAAATCAAAAAAGACAAATAACCACATAATTCGATAACCATTTAGTTCCATAATTTAGGATATTTTATTTTCTTCCGCTCTCCAATAAAACAACCTTGTAGGGAATAGGCTGTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 26445-25554 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHJ01000028.1 Flavobacterium columnare strain CC1803 NODE_28_length_38597_cov_233.772482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26444 36 91.7 30 ....G......................G.C...... TTTTTAATTTCTTTTGCGCGACTTTTAATT 26378 36 91.7 30 ....G......................G.C...... ATTTATTGTCGTGGTCAAAGTCTTTGATCA 26312 36 91.7 30 ....G......................G.C...... TGCTTAACTTCTTTACTTTTCTCAATTTCC 26246 36 100.0 30 .................................... CCTGGGCCATCAACATACAAAACAGTACCT 26180 36 100.0 30 .................................... CGCCATGAGCCTACGTACACGGTGTTGTGG 26114 36 100.0 30 .................................... AAATGCCTTTTCAACCACCATCTGGTCCTA 26048 36 100.0 30 .................................... TCGTCTGTTACTACTAAATACTCTTCGTTT 25982 36 100.0 30 .................................... GCCACCAAAGGGAAAATTCTTGCAATTTGA 25916 36 100.0 30 .................................... TTATATAATGATACCTTTACTAATATTGAT 25850 36 100.0 29 .................................... ATGGTTTAATTATACTTTTAAGCCAAGCA 25785 36 100.0 29 .................................... CATTTTCAAAGCCTTTTGAAAAGGAATGT 25720 36 100.0 29 .................................... TAATTTAATTGAATAAAGCCTTTAAGCTG 25655 36 94.4 30 .......T....T....................... AATCCAAATAAATGCGTTTACGTAAGCATT 25589 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.8 30 GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Left flank : TTTAGGAAATATATAGAAGAAGGAATTTTAAATAAAATACTTCCTAATGAAAATCAAGTCGAAATTTTAAGAGGAATAGATTTCGACGATTTAAGCTGGGCATTTGACAGTTCTGAAAGAAATGAGGAGCAAAAAGAAAAAATAAATCTATATTATCAAATTACTAATCCACAAGTTCAAAGAGGTTTAATTTTAATTATGATACGCAATAAAATAGCACACAATCAATATCCACCAAAATACATTTACGATCTCGCACAAACATTTATTCCTAAAAAAGAAAACGAATATTTTGCAAGCTATTTTAATCGTGTTTTTAAAGAAATGACAAAGAAGTTATTGGAAAGCTTAGAAAAAAAATAAACGATCCTTGTTCTTTGACAAACTGAATTAGAATTTTAAAAATGACTATTTTTGTATCTTATACAATAAAAAAAGTTTATTTTTTATTTAAAAATATTGTAGATATCCCTTGATAATTAAGGCTTCTCAACATTACT # Right flank : AAGCAAGAGAAGTGTAGTTCTTATAGAAAGTTGTGAAAGCCCTTATTTTACTCACGTTATTTCTACTGTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTAAATACAACTTGGTTGAGTAGTGAATGTTAATAAACTTAGTCATCTATTTTTTGCCAATTATTTTTAGTGTATGTTTTCCAACTAAATTATTTCTAATAAAAAACCGATGACTTATATTTGAACAATATAAAATAGGCTGAATAATTTATAATTCTGAATACCTTAAACTTCTACACTTACAAATGAGAACACACTTCATAGCCATAGGCGGTGCAGCCATGCACAATTTAGCACTAGCATTACACAACAAAGGATACAAAGTAACAGGTAGCGATGACGCGATTTTTGAACCTTCTAAATCACGATTAGAAGCTAAAGGATTATTACCAGCCGAATTAGGTTGGTTTCCAGAAAGAATCACATCGGATATTGAAGCGATTATTTTAGGAATGCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Alternate repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTGACTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //