Array 1 429715-430292 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNAJ01000001.1 Klebsiella pneumoniae strain GN-3 LSGN3_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 429715 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 429776 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 429837 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 429898 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 429959 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 430020 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 430081 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 430142 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [430147] 430204 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 430265 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439046-440720 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNAJ01000001.1 Klebsiella pneumoniae strain GN-3 LSGN3_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439046 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 439107 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 439168 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 439229 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 439290 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 439351 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 439412 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 439473 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 439534 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 439595 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 439656 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 439717 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 439778 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 439839 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 439900 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 439961 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 440022 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 440083 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 440144 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 440205 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 440266 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 440327 28 96.4 33 ............T............... CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 440388 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 440449 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 440510 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 440571 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 440632 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 440693 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //