Array 1 28060-27127 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000077.1 Leptospira kirschneri str. 200803703 ctg7180000007122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 28059 37 100.0 33 ..................................... GAAAACCATCGTCGAAAAAGCAAATCAGTTTTG 27989 37 100.0 43 ..................................... TTTTCCGGAGAGGTGACAACCTTGTCTGCCGAAAACCTGACGG 27909 37 100.0 35 ..................................... ATGCATACAAAACCCGCATCGAATCAAAATCTGAT 27837 37 100.0 34 ..................................... ATTTTATCCCTCCCATTTTTAACGTGGTGGGATA 27766 37 100.0 34 ..................................... TTCTTTGTTGTGGTGTGAAATTTTTTGTGTCAAT 27695 37 97.3 34 ..........................C.......... TAATCAGTTGATAGTATATTCACCGGTCTCTGAA 27624 37 97.3 34 ..........................C.......... TAATCAGTTGATAGTATATTCACCGGTCTCTGAA 27553 37 97.3 37 ..........................C.......... TTGCCGAAGCGTTTCCGGAAGCGACCCCAGTCCCCAG 27479 37 100.0 37 ..................................... TTAATCGAGGTCGGATCTTCCGCCCAAGCAGCAAGAC 27405 37 100.0 35 ..................................... TATCGTATCCGGCTCTACTTTTTCGTTTCGAATCA 27333 37 97.3 134 ..........................C.......... TATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTATGTGATATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 27162 36 73.0 0 C......T..C.A.CG....-.A....A.G....... | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 12 37 96.8 45 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCTCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTATACGCTCTGATTCTATGATTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTGTTTCTCCCGATCCTTTGCGACCTTTCGCGTTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TACCACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTATGCGAAATGGATCAACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 53632-53889 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000042.1 Leptospira kirschneri str. 200803703 ctg7180000007152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 53632 37 100.0 36 ..................................... CTGAATAAATTGCACATATTCAGAATTTTTTTTTTC 53705 37 100.0 38 ..................................... TAAATTTGTTGAGAAAATTGATATATGCGAAACAGCAA 53780 37 100.0 35 ..................................... TAGGAATCATTTTGAGAGCGGGGACGCGACGGAAA 53852 36 81.1 0 .............G...G..G....C....A.-...G | TT [53879] ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 95.3 37 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCTGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : GTGTTTAAAATTTTGTTCCTGAAACGGAGATTCTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGGATTGATTGCTCGGAACAATGATTTCTAAGTTTTGTGAGAGTTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACTCAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAAGTTTATAGATTTATAAATCGTATTTTCATTGTTAAATTCAGTGGTAGTTCCCACAAATTAAATCACATTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCGGCTGCGCTTTC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 4161-4835 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000049.1 Leptospira kirschneri str. 200803703 ctg7180000007153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4161 37 97.3 34 ....T................................ CTTGGATCTGGTATATGACTGCATCCAACGGTTT 4232 37 97.3 34 ....T................................ CTTCTCACCGAAATTTAAAAACTTATCCCAAAAC 4303 37 97.3 34 ....T................................ CTCTTGGCTTTTGGGTGCCACCCTTTGATATATT 4374 37 100.0 34 ..................................... TTAGTATTGATAGTTTGATTTTTGTATCCATAAG 4445 37 100.0 33 ..................................... AGTATTCACAAAATCAGAGAATGGCGACTCAAC 4515 37 100.0 34 ..................................... AACAGGAACAGCGTTCGCCGGAAAGTATCGAAGA 4586 37 97.3 35 ................G.................... ACTAAAGTTCCGTTAAAGTTTCATTTTTTGAATTT 4658 37 100.0 34 ..................................... AAATCCACTTGGATGGATTGTGATCGGTGTCGTG 4729 37 100.0 33 ..................................... TTCGATTTCATCCTTATGAAGAAAGTAAGTTTT 4799 36 86.5 0 ...........................T.-.CA...A | G [4824] ========== ====== ====== ====== ===================================== =================================== ================== 10 37 97.6 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAATTTTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTTCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTTTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 29525-29764 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000080.1 Leptospira kirschneri str. 200803703 ctg7180000007133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 29525 28 100.0 43 ............................ GATTGAAACTTTTAGCAAAACTCAAAGATCTCGAACAACAAAA 29596 27 96.4 43 ...................-........ GATTGAAACTTTTTTGGACATGGCTCCTATCCATTATCGGATC 29666 28 100.0 43 ............................ GATTGAAACTCTTACGGGTGTATATTTTATAGGATATAACCCG 29737 28 92.9 0 ..........................AA | ========== ====== ====== ====== ============================ =========================================== ================== 4 28 97.3 43 GTTCTTTCTCTTCTTTAAAAGGAGAGTG # Left flank : ACACGAAAAGGATCGATGCGATAGGAACTTTAGCAAAAAACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGGCTCATATACTACATTGGATTATACAGAACTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATATTCTAGCAACAAACATAATTCAAAATACGAAACACAGTGGTTTTTATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : AAGAACAAGCCAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAATGAGTTCAGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 46897-46496 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000030.1 Leptospira kirschneri str. 200803703 ctg7180000007136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 46896 37 100.0 34 ..................................... CACTTTAACTCTTTGAGATCTTCTGCAATCTCAT 46825 37 100.0 34 ..................................... CCATATGCGTATACCGCATAAAGGATGTTTCCGA 46754 37 100.0 37 ..................................... AGTAACTGGTCGTATTTTCTTTTTCGAAAAATCAAAT 46680 37 97.3 34 .......T............................. TGAGTGCATAGTACTGCTCATCAAAGCAAAGTTC 46609 37 100.0 34 ..................................... CCATTGCGGGCAATTGTTAATAGTTATGGCATTA 46538 37 94.6 0 ..........................A........G. | AAAC,AA [46503,46510] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 98.6 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATATTGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CAATCTAGAATAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGATGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGTTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGTACGGTCCTGCAAAGCCGGATTCGCCTAAACTTTCTTAAGTAGAATTCGCATTATTTAGTGTAGACTATCGGATTGGATACTTTATTATGCAGCTCAGATCAGTGCGTAAAAATTCCCTTCTAACTTTTATAATACAATGACTCACCCCTAAAACATGAAAAAAACAGAATATTCAGAAATTCAGATTTCTTTTTCCGAAACA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 36028-35129 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000010.1 Leptospira kirschneri str. 200803703 ctg7180000007158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 36027 37 100.0 34 ..................................... TTTAATCCTACAAATCAGCTTCCTGAACGTAAAT 35956 37 100.0 35 ..................................... TGTTTCATTATGACTTTTGTATTAAGTATTGTTAT 35884 37 100.0 35 ..................................... CTTATTATCAAGATAAGATCAAAAAATCAGAATCC 35812 37 100.0 35 ..................................... CTTATTATCAAGATAAGATCAAAAAATCAGAATCC 35740 37 100.0 35 ..................................... TCCTTGATGATTTGTTCGTTCTGCCATGCTTCAAA 35668 37 100.0 34 ..................................... TATTCAGGTGTCTGTTATTCTCATGCGAATGAAG 35597 37 100.0 37 ..................................... CTCTTACCAGCAAAGTGCAAATACTAGAAAAGTTTAC 35523 37 100.0 35 ..................................... TTCCTAAAAGTTCTTTTATGTCCGTATACATATAT 35451 37 100.0 33 ..................................... ACAAAGAAGATCCTATCAGCGACTTCTTGGATT 35381 37 100.0 35 ..................................... AGGTTATAGATACCGGAACTCAATATAATTTCCGT 35309 37 100.0 35 ..................................... TTAATAAAATTTCCCAAATTCTTTTAGCATTTTTT 35237 37 100.0 35 ..................................... TTATACGAGGCATTAATCGCTTCCAACGTAGCTTT 35165 37 97.3 0 .................T................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 99.8 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGCTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTAAATTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTATGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : TAAATGCGTCAGCGCTGACGCATTTAGTTGGTCTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGATAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTATTTTTCCTCCATCGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 25892-28374 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWG02000008.1 Leptospira kirschneri str. 200803703 ctg7180000007112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 25892 36 100.0 34 .................................... TGCCACAGTGTGCTCAAGATCCGAAGTAGGAAGA 25962 36 100.0 35 .................................... GAGTCTAACGCGACTTCTAAAGTCGGTCCGTTTTT 26033 36 100.0 34 .................................... ACTAGAAAATTCGGAAATCATAATATACAACGAA 26103 36 100.0 37 .................................... AAATTGTTCCACTCGCGCCTTTAAGTAGAAGTTTTAT 26176 36 100.0 35 .................................... TTGTGAAGTTCGAATCGTAAAGGGAATGATTTCAG 26247 36 100.0 39 .................................... AATCAACGACGACGGAAAGCGCGACATCTTCGTTGAAAC 26322 36 100.0 35 .................................... TTTTCATCGTCGCTACGTTAATCGCCGTTCCGTAT 26393 36 100.0 35 .................................... GTTTTGATCCGGAGGAAATTTCCACCGGAGGCGGT 26464 36 100.0 37 .................................... ATGTATAAGAAGTGAAAGCTAAGCTATTCCAAATGAG 26537 36 100.0 35 .................................... GGCGAACAGATGCTCGAAAGGGACCGCCTTGTAAA 26608 36 100.0 36 .................................... GAAAAGCTCTGGCCGGAATATGAACGAATCTCCAAA 26680 36 100.0 38 .................................... TACAATCTCCTTGGTTTGTGTTGACGTGGCGCCCTTTG 26754 36 100.0 35 .................................... TCAAGCACAAAAAGAGACATAATTTTATTATGGGG 26825 36 100.0 34 .................................... ATAGATGATCTCTTGCTCTTTGCCGGGAGGAAGT 26895 36 100.0 38 .................................... GGAGGCAATCGCTGTCCCAACAAATAGCAAGTGAACCG 26969 36 100.0 38 .................................... GGAGGCAATCGCTGTCCCAACAAATAGCAAGTGAACCG 27043 36 100.0 36 .................................... TCATAATCGAATTTATAGGCGATTACCATTGAGGAG 27115 36 100.0 36 .................................... GAAACCTATATCCGCGAGGCAAAAAAGAAGCAAAAA 27187 36 100.0 36 .................................... TAATCTCCTCCCAGCGGATCTGAATTGTCTGGACCT 27259 36 100.0 35 .................................... CAAATCAGGATTAAATGCATGAGTGACTCTAACCA 27330 36 100.0 35 .................................... GTGGGGAAGTGTTGGTAATAGAAATGTTTTAGACC 27401 36 100.0 36 .................................... ATTAAATAATTCTATTGACCATGCCCAAACTTCCGC 27473 36 100.0 36 .................................... ACCATATTTTCTTCGATATCTGTAAGAACGTGGAGA 27545 36 100.0 36 .................................... GAATACAATTCTCAATAATTCGTTAGAACCTGAACA 27617 36 100.0 35 .................................... GAATATCATATTTCGCACTTCGGTTTTCTTCGGAT 27688 36 100.0 36 .................................... ATGGAACGAGGCATGCAGCAGATTATAGAGGCGACT 27760 36 100.0 35 .................................... CATCCAATATTATTGTTCCGCACGGAATTCCAAAC 27831 36 100.0 34 .................................... GCAAAAGGAAAAAACAGTTCCAACTCTTGCTATG 27901 36 100.0 34 .................................... CTGCACAACCCCAATAGCTAGTTAAAACTAACAT 27971 36 100.0 38 .................................... CTGTATTGTAGCCCTAAGAGATCGCATTTTATTTTCCG 28045 36 100.0 35 .................................... AGGTGCAGGAGATAGGATACTACCAACGGCCGGAA 28116 36 100.0 38 .................................... CTGTATTGTAGCCCTAAGAGATCGCATTTTATTTTCCG 28190 36 100.0 40 .................................... AGGTGCAGGAGATAGGATACTACCAACGGCCGGAACTGAA 28266 36 97.2 37 ..T................................. CAAGTAGTCGTTAGATCACCGTTATGTATTAAAAATG 28339 36 83.3 0 .............................CATAAC. | ========== ====== ====== ====== ==================================== ======================================== ================== 35 36 99.4 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : ATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAACTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CTTACCCACAAGTTGAATAGGATTTTAGAATAAGAAGGCTCAAAAACGCACATTTTTCAAGTGTTCCGACAAGAATGAGTCTTTTTACTTGCAAAAAGCATGTTTTTCTGATAGAGAAAAATCTTCCGAATTTCTCCACCTCCGCCCCCACCCAAAAATAAGGGCGGGAACTCAGTTTTACAGAGGATTTGTCGTAATTCCCACAAGATTTAATATTGAAATCTAAATACTTGTGGGTAAGGTTATGGTAAGGCGTTGAGCACGTCAGAAGTAGTTCCATAATCCTCTTGGTTGCGGCTACTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCACACCAACTCAATTTGGTTGGCCTTGTGTCACTTAACGACTGAACTTAACTTTGATGCCGTTAGGCGCTAAGCACAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCTCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //