Array 1 890747-888495 **** Predicted by CRISPRDetect 2.4 *** >NC_013422.1 Halothiobacillus neapolitanus c2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 890746 37 100.0 34 ..................................... AGCGCCTCGCGTAGCAGCGCAACATGCTCAGGCG 890675 37 100.0 35 ..................................... AGCGACTTGCCGCTTAAAAACGCAACCCAGGGGCT 890603 37 100.0 34 ..................................... GATCAGCTCGGTGGCGGCATCGGCGGCATCAGAC 890532 37 100.0 34 ..................................... CAGCTATCGATCGACAAGGCCCAGGCCAGCCAAG 890461 37 100.0 35 ..................................... GATATAAGCATCATAGTCGGGCAGGATTTGCTGGA 890389 37 100.0 35 ..................................... AGCAGTCGGTAGATGCAACCACTGTGCAGCAAGCG 890317 37 100.0 33 ..................................... CGGATTCACACAGTGCCACTTCTTTGCCGGAAT 890247 37 100.0 36 ..................................... AAAGAGCTTGGCGATGCCTATGCGGATGCAGCCGAA 890174 37 100.0 34 ..................................... TGCGTACTTGTTATCATCTTTGCAAATTGATTCA 890103 37 100.0 34 ..................................... AGTTCATGCCCAGCAACCGCAAGGAAGCTGGCGG 890032 37 100.0 35 ..................................... TTGTATTGGTTGGGGTCATGCCTCCACCCCCGCAA 889960 37 100.0 35 ..................................... CAGATCCAGCCAACCGTCCACGGTCAGGCCTTCTG 889888 37 100.0 34 ..................................... CGCCCAGTCCGTCATCGATGCGCTGAATGCTATC 889817 37 100.0 35 ..................................... CGGTGATGGCTGCCAGCGCAAAATCAGTGCTGTTC 889745 37 100.0 35 ..................................... TGGTAGTACTTGACCGATCCGCCGACATCAGCAAA 889673 37 100.0 33 ..................................... TTTTTCGGCCATTGGCCTTGATTGCACAGCATG 889603 37 100.0 35 ..................................... CCGTTGCGCCTGATCGGATGTTCGATGAGACAAAC 889531 37 100.0 34 ..................................... AGTCGCAGAATGACAAGCGTTTGAGTTTGCTTGA 889460 37 100.0 34 ..................................... TGACGTGATTGGGAACGCGCTGGTCTGGATTGGC 889389 37 100.0 34 ..................................... GGCCCCCGCGCGAGGTAACTTTCCATCCGCGAAA 889318 37 100.0 35 ..................................... AACATGCAATCATGGGAAGCGTGCTCGGACACCAC 889246 37 100.0 34 ..................................... GATTACAGCCTGCACCGGGTGACATTGGACGATG 889175 37 100.0 34 ..................................... TATATCCGGCATAGTTTAAGTCACCATTCCAATC 889104 37 100.0 34 ..................................... TGTTCTGGGGCTTTATACCAATTCACAACTTGCC 889033 37 100.0 34 ..................................... AATTTTTGCATCAAATGCAGTAATGGTGATGGAT 888962 37 100.0 34 ..................................... ATCGATGGGTTACCTCATGACCAGCCCAATTCTC 888891 37 100.0 34 ..................................... AAAGCCGTGGGCATCGGTTGCCACCACCGGCAGC 888820 37 100.0 36 ..................................... CTTATTAAAACGATGTGGGCAGGTGGTATGGCAGGC 888747 37 100.0 34 ..................................... TGTGGCTCTGGAATGGCCAGCTGCTCATGCACCC 888676 37 100.0 34 ..................................... CCCAAGATCAGCCGACTGGATGCGGTATATGGGA 888605 37 100.0 33 ..................................... AACTTGTGTGGATCGTATCGTAAATAAGTTCGA 888535 36 91.9 0 .............................-...TC.. | CG,C,C,A [888501,888507,888512,888515] ========== ====== ====== ====== ===================================== ==================================== ================== 32 37 99.7 34 GAATCGCCCGGCCTAACCGCCGGGCGCGGATTGAAAC # Left flank : CTATCTACCCTATCAGTCAAAGTGAGATAATCCATGCTCATCATCGTTGCCTACGATGTCTCCACCGAAACTGCCGCCGGACGCAAACGATTGCGTCGTGTTGCAAAAGTTTGTGAGCGCATGGGACAACGCGTTCAAAAATCTCTGTTTGAATGTACCATCAATGAAATGCAATATGAACAACTGGAGCGAGACCTGCTTAATGAAATCGAAGAGACAGAAGACAACTTACGCTTCTATCGCATCATCGAACCGGTAGAAATGCGCGTCAAACAATATGGCTGCTTCCGATCAGTAGATTTTGAAGGCACGCTCATTGTATAAGCGCGAATGGTTATCAAAGGCGCAACCCCCGCACCTTCGCGAAAGAATCAACATCATGATTCATATATCAAATTTTCGAAATAAAAAACTAACAACGCTGAATTACTGGCTTCCCGAGTGCATTTCGCGGGAAAATGCCAAAATCCGCTTGTGTAACGTACCGTTACAAGAGTGGA # Right flank : CACTTTTTTCGAAGGGCTTCCTTCGTCACTTCGCTCTCCAGCAGCGCCTCGCCAAGCAGCTTCATCAGTCAAGCGTTTTCCGACTCCAGCGCCTTAAGCCGCTTCGCGTCAAACACGACCATGCCGCCAAACTTGCTGCACCAGAGGTAGTAGCTGGCCTCTGATAAACCGTGCCGTCGGCACAACTCCTTGATCGGGACACCGGCGCCCGTTATTTGTCGCAGAACAATCATCCTGTACCTGAGTGGAGACAATCAAAGAGGAGATATTTTAGAGCCAGCACTCAACAATTGGAGGGTAGCGGCCAGAAAAGCATGATTAGCAGTGCCCGTTGGTCGTCACGAGGCGAAATCCAATGAGGATATGGAAAATTCGACAATCAATAACGCTAAGCAGAGTGAACACAACCGCAATTTTCTGCCTGTACCACTCATGGAAAAGTGGCAACAAATTGGCAACGGAAGTGGGTTTTCGAGAAGCGAAGCTGAGATATAAAACCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCGCCCGGCCTAACCGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //