Array 1 1176-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIR01000027.1 Haloparvum sedimenti strain DYS4 scaffold_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1175 30 100.0 36 .............................. GAGCTCGGGCGGCTCGTCGACGAGCTCGACCGGAGC 1109 30 100.0 36 .............................. TTCTTTGTCGGGGTCGAGCGCGGCGATCCCGAAGGT 1043 30 100.0 35 .............................. ACGGCGACGGTCGAGGACGGCGACGGCGGCGACGA 978 30 100.0 34 .............................. GACGGTGCCGCCGGACCACACCACGCTTGCGGGC 914 30 100.0 36 .............................. GTCTCCCGCGGGGTGCCCGACGCCGAGTCGGTGAAC 848 30 100.0 36 .............................. GCCGACGACTTCGCGGACCTGTATGCGAACGGCTCC 782 30 100.0 36 .............................. GCCGACGTACACCTGCGGGTGCGCTTCGGTGGCGTC 716 30 100.0 35 .............................. CGCCCTCCTCGAAGCGCGGACCGCGCCAGTCACCC 651 30 100.0 37 .............................. CTCGCCCTGTTCCGTCTGGATCGGGCCGCGGTCGCCG 584 30 100.0 36 .............................. GTCGATCGCGTCCGCGACGAGTAGCGCGGAAGGGGT 518 30 100.0 34 .............................. CGGTGGTCGGCATGAGCGGCGGCGTGCCCTCCCC 454 30 100.0 36 .............................. CAGATACTCGGCCCGTCGTCGTCCGGGTCGTTCTCC 388 30 100.0 36 .............................. ACCTCGGGCCGCACTTCGATCCCGGAGAAGTCCACG 322 30 100.0 36 .............................. CGGGTTGTCCATGCTGGCTCGGATCAGCGACACGTA 256 30 100.0 36 .............................. CGCGGCTACCTCGTCCTCTCCCGCCCCGACCGCGGC 190 30 100.0 36 .............................. CGCGTATCTCGCGGCGTTACCTTCGGCTCGCGGCGG 124 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GACCGTCGAGCATCCACGGCTCGACAGGAACGTGAGTTATCAGTATCTGCTCCGGCTGGAGGCGTACAAGCTGAAGAAGCATCTCCTCGCCGGTGAACAGTACGACGGATTCCGGAGGTGGTGGTGATCTACGTCGTACTCGTGTACGACATGGAGGCTGAACGGACACAGCGAATGCTGAAGCTATGCCGACGGTACCTTACCCATGTACAGAACTCGGTGCTTGAGGGACACATTACCGAGGGGGATCTCACCGCACTCCGGAACGCTATCGAAGACCTCCTCATTACCGGCGAAAGCGTGATCATCTACGAACTCTCCTCGGAAGCTCTCGTCGACCGTGCCGTCTACGGTGACGATCCCGCCGAGGACAGCCGTTTTCTCTGAGGGCTGTTGCGCCAGTTGTCGACCCCCGGGGGTTTTCGGGACTATTGCAGGTCGACGGAAACACTTGTGTATGCACAAGGTATAGCGGGCGTGTGGTGCCCGAATTGACCACC # Right flank : GGCTGTGTTGAATCGCTGTAAGGCGTAGAGATTCACTGTTTGACGAAGCGCTTGATGTTATAGACGACACACATCAGCGCGATTTCGCGGAACTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 12672-11990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIR01000027.1 Haloparvum sedimenti strain DYS4 scaffold_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 12671 30 100.0 36 .............................. CGCCCCCGGACGATCCACTGTCCTCGCTGATCGCGT 12605 30 100.0 35 .............................. GAACGTCGAAGACAGTGGTGTAGAGCCCGGCAGCT 12540 30 100.0 34 .............................. ATGACCGCGCTCGTCGATGATCTCCACCCGACGG 12476 30 100.0 35 .............................. GACGCCTCGGCGCTCGCGAGCGTCGCGTCCGGAGA 12411 30 100.0 36 .............................. ACACCTGCGGGTCCGTGTGGCGCGACTACAAGAACG 12345 30 100.0 34 .............................. GGCAGGGTCGCGGACGTGATCGGTGTCCTCCCCG 12281 30 100.0 34 .............................. AGCCGCTTCTCCGACGGGTTCACGAACAGGTAGT 12217 30 100.0 36 .............................. ATGTGCGGGGCGCATGTGTGTGTGCGAACTTGGAGG 12151 30 100.0 36 .............................. CTCTCGGTAATTACGAAGAGGACATCGACACGACGG 12085 30 100.0 36 .............................. AGCTCATCGGGGAGACAAAACTGCAGCCGAAGAAGG 12019 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 100.0 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AATTCCGCGAAATCGCGCTGATGTGTGTCGTCTATAACATCAAGCGCTTCGTCAAACAGTGAATCTCTACGCCTTACAGCGATTCAACACAGCCGGTTGAAGCCGATTGAGGACCAGCTACGCGACGCTATCCAGCG # Right flank : GAACTCCACCTCGGAGCCTGGGACGAATATCCATTTCGTGGGAGAGCCAGCCCCGCCGGCTACGAAGCTTGGCTCCTCGATCATCTGAATCCCCCCGTCCAGCCAACACCGGGTGGAAGATACGGCTTCTGCCGTTAGAGACCATCTCTACGAACATGCACTACGCCACCCGGTCGGCGTCCGCGGTCGGCCGGGAGCGTTAGAGACCATCTCTACGAACATGCACTACCGCAATTTTAAGGTATTACGGTACGTATTACTGCATATGAGTACCGCAACGCGGATCACGGAGAAGGGACAGGCAACGATCCCGAAACACCTCCGTGACAAGTACGGTCTAGAGCCCGGTGACGAGGTCGTCTGGGTCGACACTGACCAGGGCATCGTCGTCAAAAAGCGTACTCGAACGAGCGGTCGCGGGATGCTCGTTCCGGACGACACGTCCGCGGAGAAACGCGAAGAGATCGCGAAAGAACTGGAACAGCGGGTACGCGACCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2137-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIR01000105.1 Haloparvum sedimenti strain DYS4 scaffold_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2136 30 100.0 35 .............................. CGTGATCTGTGTGGTGCCGCCCTGCGTTTCGAGCA 2071 30 100.0 35 .............................. ACAACCACGGCACGGTCGCGGCGGGCGAGACCATC 2006 30 100.0 34 .............................. GTAATACCCGCGTTCGCGGGCGTTCGCTACCTCG 1942 30 100.0 35 .............................. GACTTGAGCGCGGACGTACTCGCGGACCACCGCGA 1877 30 100.0 35 .............................. CGCCGCTCCGCGCTCCGCCGCCCGATCGCCGGCGC 1812 30 100.0 33 .............................. GATGGGCACGCCTTCATTTTGGACCAGGGACGC 1749 30 100.0 36 .............................. ACGCCGCAGGGCATCACGAACCACGAACCGAACTGC 1683 30 100.0 36 .............................. TGGTTCGGGACCGACTCGCGCTGGCAGACTGGCCCT 1617 30 100.0 37 .............................. GCTCGCCTCGTTCTCCGGGTCCAGCAGTTCGTGCAGC 1550 30 100.0 36 .............................. CGTCTCCGCGTCGGTCGAGGGCGGCGTCAGCAGCGG 1484 30 100.0 34 .............................. CGTCGACACGGTAACGGCGGACCCCGACCCCGAA 1420 30 100.0 36 .............................. GGCCGCGAACTGGCTGCGGAGGTTGGCGGCCCACTG 1354 30 100.0 35 .............................. CAGCTGCAAGACCAGACGGGGCGGTTCCAACCCGA 1289 30 100.0 34 .............................. GCGGGCGCGAAGCGGTCCGCAGGGGGCGACCGCT 1225 30 100.0 37 .............................. CGGTCGGCGGTCCGCTTGAGCGTTACCAGTACGGAGC 1158 30 100.0 35 .............................. GCGGCCGGTCGGCGGCGAGGATGGCGTTGGCGGCG 1093 30 100.0 35 .............................. CGCGACCACGCTCCCGTCGCGGACGGCGCTCACGA 1028 30 100.0 35 .............................. GACCGCTAAGTCCCACATCTGCTGTCGGGCATAGA 963 30 100.0 35 .............................. ACTCCCCCCCCCATGCGCCGTACAAGGGCGCCTGC 898 30 100.0 34 .............................. GCGCTCGACGAGCTGACGCGCGCGGACTGGGACC 834 30 100.0 35 .............................. ACTCCCGCGGCGGAGGTGGCGTGATGGACGCCGCG 769 30 100.0 35 .............................. GAGATCCTCGCCAGCCCGCTCCGCGAAGGCCTCCG 704 30 100.0 34 .............................. GCGGCACCGACGACGCGACGCAGGACACGATCGA 640 30 100.0 36 .............................. ATCACCCAGTGGCTACACTGGTCGTATGTCAATAGT 574 30 100.0 36 .............................. GCTGGGATTGTGGATCAGCCGGAAGAGCAGTTCGAA 508 30 100.0 34 .............................. GGACGCGGCCGCGCCGGCGAGTACGGCACCGCGC 444 30 100.0 34 .............................. AGCAAGTGGTCGAACGACTCGCTGTTCGAGTTGA 380 30 100.0 35 .............................. AAACGCAGGTCAGCACGACGCCGTGGGAGATCCGC 315 30 100.0 34 .............................. GCGTGGCCCGTCTGACACGCCTCGGTCACGCACA 251 30 100.0 35 .............................. TGTGCCTGTTGCTGTTGGAGCTCCTCCTGGGACGG 186 30 100.0 36 .............................. CGAGTTTATCCGTGTCCGCGCCCTCGTAGGAAACCT 120 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 99.9 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GGGCTCGATAAGGGCCGCGACCGCGGGTTCGCCGATCCACCCCAGTCCGAGCGAGGCGAGCGTGATCCCCAGTTGGGTGACCGCGAGGTAGTCGTCGAGGCTGTCCATCGCCGCGTCGAGCGTCTCGGCGCCGGGCTTGCCGGCGTCGACCATCGACTCGACCGCGGTCGCGCGAACGCGGACGTACGCGAACTCCGCGGCGACGAAGAAGCCGTTCAGCGCGACCAGAAACAGCGCGAGGAGGACTCACCCCGCGGAGATGGCGAGGTCTACCACCGCTGCCCTCCGACGCGACGGGATGGAACACGTAACGAGCGCATATCAGCCATACCAGACAAGTCTACTCCCCCGGTACTAAAACGCTCCCGTGGGGTTACTGGACCCCCCGTCCGGACGCCCAGACTGTCGACCCCGGGGGGTATCGAGGGGTATTGCGGGTCGATGGAAACGCTTGAGTGAAAACGGGGCGTAGTCGGGCTGTGTCCGGGGAATGGGACACG # Right flank : GGCTGTGTTGAATCGCCATACAGCAGCGAGTTAGGCCGCTAAATCAAAGGAGTTGAAGCGAGAGAATGCGGTTGTCTATGACGCAAATCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 147257-141165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIR01000062.1 Haloparvum sedimenti strain DYS4 scaffold_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 147256 30 100.0 36 .............................. ACCGCACGGACGGCGGAGAGTTATCTGCCCCTAACT 147190 30 100.0 35 .............................. AGGAGTGGGAGAACCTTCCGCAGGAGATCCGCGAC 147125 30 100.0 35 .............................. GACTTGAGCGCGGACGTACTCGCGGACCACCGCGA 147060 30 100.0 37 .............................. AGCGAGAGCGACGTATCTCTCTCACTGAGCACGGCCG 146993 30 100.0 36 .............................. GGTGGGCGCGCTCCGGTCAACATCAAGAGTGCGTCC 146927 30 100.0 36 .............................. GATCACGAACCCCGGCGAGTCAGTCGCCGTCACCAT 146861 30 100.0 36 .............................. GTACTCCGGCGTCTTGATCTTATCCGTGTACTTCGC 146795 30 100.0 34 .............................. GACATGGAGGTGCTGCATGAGCGGATCACCGACT 146731 30 100.0 35 .............................. GTGAATCAGGCCGAGGTGCTGTTAGGCGACGACGA 146666 30 100.0 33 .............................. GCCACGTCGGCGCTGCCGGCTTCAAGCAGGTTG 146603 30 100.0 33 .............................. GCCGATCCCGTCGAATTTCTCCTCCAGTACCTC 146540 30 100.0 36 .............................. CGGTGGCGGCCCTTTAGCATGAGGTGCGTGCGAACG 146474 30 100.0 35 .............................. GGAGTACGGGGGGAGAGAGGATCTGGAGCAGGACG 146409 30 100.0 36 .............................. GCCTCCTCGGGGCGCGCGGCAACGCGGCCACCCGTA 146343 30 100.0 35 .............................. ACGAATCGCCCCGGAGTCATCGGCAACGAGGAGCC 146278 30 100.0 33 .............................. ATCGTGATGTCCGCGCTGCCGGCCGTGACGTTG 146215 30 100.0 34 .............................. GTCCTCATCCAGCGCCGACAAGATCCGCTCCTTG 146151 30 100.0 35 .............................. GAGCGCCGAACGGCCCCATGCCCGAATTGCTCTGG 146086 30 100.0 35 .............................. TCGCGGAGAATCCCGAGGACAAGCGGGGGACGGTC 146021 30 100.0 34 .............................. TTGCGTGATGTCCGCCCGGAGGGTGTAGGCGTCG 145957 30 100.0 34 .............................. GTCCTCGCGCAAGAAGTCGGTGACGAACGATTCG 145893 30 100.0 36 .............................. CGTCACCGCGTGGTCGTCGGCACACTCCCGAAGGTC 145827 30 100.0 35 .............................. ACAGACTGTACACTCGTACTCGCCGGTAGGTGTTC 145762 30 100.0 37 .............................. GACTACGGCGAGAATGAGCTGTATCTGTCGTTCCTGC 145695 30 100.0 34 .............................. GTGAACGCCCACCCGTCAGCCCCACCGATGGTTG 145631 30 100.0 37 .............................. AGCCATGTGGACTTGGTACCATAGTTCGGGATCTTGT 145564 30 100.0 35 .............................. GGTTACGTCAATCGGGTCCGCGACGTTACGGAACG 145499 30 100.0 36 .............................. CAACGTGACCAGCTCGCCGCCCGGCAACTCCGTGAC 145433 30 100.0 33 .............................. CGCCTCGTGCTCGGTGGGGACGTGCAAGTGGCG 145370 30 100.0 34 .............................. TCGATCAGGACGCCCGCCGAGAGGTCGCGGATCT 145306 30 100.0 36 .............................. ATCCAGACCGCCCTTGTCGGCGTCAGGGTCGCCCGA 145240 30 100.0 36 .............................. GGACACTCCCCGGCATCCCGACGTGGTTCAAGCCGG 145174 30 100.0 33 .............................. ATCTCGTGGGTGTCGATGGCGGTGTCCCAGTGG 145111 30 100.0 35 .............................. AGCTACTCCGGTCGCGCGCTCATAGAAGGTGTCGC 145046 30 100.0 35 .............................. AGCAGACGGGTCAGGGAGTCGAGGACGCGGCCGGC 144981 30 100.0 35 .............................. AGGTGAAAAAGGAACCCTACGACGCCGACGACGCG 144916 30 100.0 36 .............................. CATCCACAAAGTCGATCAGTTCCTCGGGCGTGAGTC 144850 30 100.0 36 .............................. CAGTTGTCCAGCAAGTAGGAGTAGAGAGCCTCACGC 144784 30 100.0 36 .............................. CGACTTGAATCGGAGCGCGACAAGCGTCTTGCCCGG 144718 30 100.0 35 .............................. ATGGGACAGACAGTTCCCGGAGTCGATGACGTACA 144653 30 100.0 35 .............................. GTCGCCGCTTCGTTGCCACACCGCGGACACTCATA 144588 30 100.0 35 .............................. GGGCAGGCCACCGGCCGGCTGTGACCCCGGCTTAC 144523 30 100.0 35 .............................. GACCTCCCAAAGGTCGTCGTCGGTGTGCTCCTCTA 144458 30 100.0 32 .............................. CCCAACACCTCCGGCCGAGATCTCTACGAAGA 144396 30 100.0 36 .............................. ACGTCGGTCGCCTCGACCGAGTACGGATACGCGCTC 144330 30 100.0 36 .............................. CATATGTAGCGTTCGGCGTTGTTTCCGTTCGCTCCG 144264 30 100.0 36 .............................. AATGCGGGCGAGTCGAGCACGGTCGGCGTGAGGACG 144198 30 100.0 35 .............................. CCCGAGATTAGGCACCGGCTCGAAGATCGATAGCT 144133 30 100.0 35 .............................. GCATAGGGCTTACATCAATAACCGCCTTATCCCGT 144068 30 100.0 36 .............................. ACTCCTCACCGGCTGTGGTTGGCGGCACGGTCTACG 144002 30 100.0 34 .............................. CCGCCTGTGCGGCGATAGCCGAGAACACGAACGT 143938 30 100.0 35 .............................. ATCCCCACCTCCGCAGGATCGGGTAGATAACCCGC 143873 30 100.0 36 .............................. GTTGAGCACAGTCCCGTTATCCGGGTCCGTACAGGT 143807 30 100.0 35 .............................. GATCGATACTCCACCGCCTTCGGACCGGCCGCTGA 143742 30 100.0 35 .............................. CGCCACATCCAGCACGCGGGCGGCTCCTCGAGCCG 143677 30 100.0 35 .............................. CTCATCCGGGGGCTGATGCAGTGATGCTCGCGCAG 143612 30 100.0 35 .............................. ACGGCCAACGCCGCGGTCGGCGACTACGCGATCGA 143547 30 100.0 43 .............................. CCGAACGGCGTGGGCCGCTTCGATGCTGTTGCAGTAGACGGTG 143474 30 100.0 37 .............................. GCGCTCGACGCGGCGCCGCGCTCCGAGCTCCGGCGCG 143407 30 100.0 34 .............................. ACGACCAACGCCGCGGTCGGCGACTACGCGATCG 143343 30 100.0 35 .............................. TCGGCTGAGGTGACCGCGACCGGCATCGAGTCGGC 143278 30 100.0 36 .............................. GCATCGCCGCCCGTCTCACCGGCGACGTCGACGACG 143212 30 100.0 35 .............................. CTAACTTCAAAACCGCAGTAAGTGAAGGTACTGTT 143147 30 100.0 35 .............................. GTAGAACACCCGTGGGTGGGGGTAGAAGTCTCACA 143082 30 100.0 35 .............................. CTCGCTCCAAGTGGTATGGGTCGTCTTTTAGACAA 143017 30 100.0 35 .............................. AGGGACAGGTAGAGGGTCATAGTCTCGTAGTCCTC 142952 30 100.0 36 .............................. GCCGCGTGCCAGTACGGCGGGCGAACCGTCCGGTTC 142886 30 100.0 35 .............................. AGCCATGTGGACTTTGTACCACAGATCTGGGTCTT 142821 30 100.0 35 .............................. CTCAACGTCAGACCCCATCTGCCCACCGAAGCCAA 142756 30 100.0 32 .............................. CTCGTCCTCGACGGTGAGGCGGATCCACTCCT 142694 30 100.0 36 .............................. ATCCCCTCCAGCGACTGGTTGAGGCCCTGAATGCGC 142628 30 100.0 35 .............................. ATCATCGCGGCCGACATCCTCGCCTACGCTCGGGG 142563 30 100.0 35 .............................. TACGTCTATACGCGCTTTGATTTGGGCCATCTCTG 142498 30 100.0 34 .............................. TATGACTGTAATAATAGGGACCAAAAAAAAACCA 142434 30 100.0 35 .............................. GCCGGCTACGCGCACGCCGACGTAGTGCTCGGAGA 142369 30 100.0 36 .............................. GTTTTATCTCGGTCGACCGTGGATCAGTTGCTAACA 142303 30 100.0 38 .............................. ATGCCACTACGAAAGCCTTTCAGATATGTAACCATATC 142235 30 100.0 36 .............................. AGTCTGTCATAACTCAATCAGACACACACATACCTA 142169 30 100.0 35 .............................. ACAAACACGAACGACCTCGTGTACGAGATCCCCAT 142104 30 100.0 35 .............................. GTCGATCGCGGAATCACGAAGCCCCACGACGAGGC 142039 30 100.0 34 .............................. TGCCGATCATCGGTGACGAGGGCGTCGGCAAGTC 141975 30 100.0 34 .............................. CGTCTCCCCGATGAGTTGAACATCATCCCTGTTG 141911 30 100.0 35 .............................. GCCTCGACGCCCAGGCCGGTCTGGCTGAGGAACTG 141846 30 100.0 35 .............................. ACTCGAACAGACGCGGAGCGCGCGCTCGTGCGCGA 141781 30 100.0 34 .............................. AAGTGCCGTCTCGTGCTGACGTGGACACGATGCG 141717 30 100.0 35 .............................. CCGATGCGGGACCGCGTCGACGAGGATACCGACCG 141652 30 100.0 36 .............................. GGCGTCCGCTGAGGTCCATCGGATCCGGACGTCGCT 141586 30 100.0 37 .............................. CTCAAAACGGTCGACGAGCTCGCGCCGCGGTCGACGT 141519 30 100.0 35 .............................. GTCTTGAACGCGGTCTTCGTTCGTGCTCATAGTTG 141454 30 100.0 35 .............................. TCGATCCCCCGCGACCGTCGCATCTCCACCAGCCT 141389 30 100.0 36 .............................. CGGTTGATCGACTTCCTGCGGTCGTACTACCGGGCG 141323 30 100.0 36 .............................. CCCACACGGTGCAGAATAGGTCGCCGTCTTGTTCTG 141257 30 96.7 33 .............G................ GAGCTGAAGGCCATCCGCGCCTACCACGAGCTG 141194 30 96.7 0 ...................A.......... | ========== ====== ====== ====== ============================== =========================================== ================== 94 30 99.9 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GAAGCGGGAGATTTGCGTCATAGACAACCGCATTCTCTCGCTTCAACTCCTTTGATTTAGCGGCCTACCTCGCTGCTGTATGGCGATTCAACACAGCCGGTTGAAGCATCGTGATGTCCGCGCTGCCGGCCGTGACGTTGAAC # Right flank : GATCGAATCACCAGCTGCCGCTAAGTCAAACACACATCTCAGACAAAATCCAATGAGATTGAAACAAAAATGTAGCATGCGGTATCAGTAGGAACCGCGTGTTTCAACCGACCTTTCGTGAGACCGAAGTACTGGCCAGGTCCAAGCGCGTTCGGCCTCAGTGAATCCGGTTTCAGCTACCCCCACGTCCACAGCGAGTCGAAGACGAACCGGTAGAGTCCGCTGATGAGGATGGCGACGGCGTTGGCGATCAGGTACGTGATCGCCGCGAACTCCACCAGCCCGTAGAGGACGCCGAGCTGGATCGGGATCGCGGAGCCCCGGACGACGTTCGTCTTGAGCAGCCCGGCGAGGTAGTCGTGGAGACCGGTGTTCTGGGTCGCTCGGAACGTCCACGCGTTGTTGAGCACGTACGAGAGAACGATCGTGATCTCGATGGCGATCGTCGCGCCGACGAGGTAGTTGAGCCCGCCGGCGTCGACGAACGCCCACAGCAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //