Array 1 39051-39936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTN010000004.1 Francisella tularensis subsp. novicida strain F1112 novicida_5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 39051 36 86.1 32 ...A.T..T.A........................G ATATTTGAAGCAGCTGCTTATGTTTTGACAAT T,GG [39061,39065] 39122 36 100.0 28 .................................... TAAGGTGTAACACACTACACTTTGCAAG 39186 36 100.0 30 .................................... ATAACGCAATAAAAAGCCCAACACCCACGC 39252 36 100.0 29 .................................... GTGTTGAAAGTAGCCAGAGAGCAGATAAA 39317 36 100.0 28 .................................... TTAAGGAGTATAAAGATGATAAAGCGAC 39381 36 100.0 32 .................................... ATATTTGAAGCAGCTGCTTATGTTTTGACAAT 39449 36 100.0 30 .................................... CTTCTAAGTAATAATCGTATTTTCATTATA 39515 36 100.0 29 .................................... CCCAAATACTTTCGATTTTCTTAAGCACT 39580 36 100.0 28 .................................... ATTTCTGCTGAAACCTATCTAAAATACA 39644 36 100.0 29 .................................... TTAGAGGGGTATGTGATGGATATAATTGT 39709 36 100.0 28 .................................... CATTAGCAACACCAGTCATCACATAAAT 39773 36 100.0 28 .................................... ATTCTAAATTATTGATATTACTTGAGCC 39837 36 100.0 28 .................................... CATCTCAAAAACTAGGAATTTCTACAGA 39901 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.0 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : TAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTATTTATCACCGCAATATATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCAATAAATTCTCAAGTAGTGTTATATTAGCAAATACTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTGGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGTCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1268-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTN010000087.1 Francisella tularensis subsp. novicida strain F1112 novicida_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1267 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1258] 1196 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGCCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1169] 988 37 97.3 34 ............A........................ TGGTACGGAATAAAAGAGACTGTTTGCGATGTTA 917 37 97.3 36 ............A........................ ATTAGTTGCACAGGTTTATTCAGATACTTGTTTGAA 844 37 100.0 36 ..................................... CTATGAGCCTAACAACTGCAGGTTTGTAGATAGAAG 771 37 100.0 35 ..................................... TAGAACCAAAGACACTAGCATCTTGTATAACTACT 699 37 100.0 36 ..................................... CAGGCAAGAATATTTAGCTACTTTTGAGGAGGCTCA 626 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 8 37 93.9 54 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAATGAG # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAAT # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //