Array 1 62061-62516 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000001.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62061 29 100.0 32 ............................. GATATATAACCAAGAGATTTTTACCAAAAAAG 62122 29 100.0 32 ............................. CCAGAATGATTATTGATATAGCAGAAGCGTAC 62183 29 100.0 32 ............................. CCATCTAACTGTGCAATTGCACCTCCACCGTT 62244 29 100.0 32 ............................. AATTGATTAGTGATGTTTGTGATAAAAATGTG 62305 29 100.0 32 ............................. AATGGGTAGAACTGGAGAAAGAAAATGGCAAA 62366 29 100.0 32 ............................. TCCTAAATTAATTAAATAGTTTTTCATAATCA 62427 29 100.0 32 ............................. GGCGTACATTTGTTCGCCCTGATTTAGTTTGT 62488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCTGTACCCACAGGGATAAACCG # Left flank : TTGATTGAAGATGTCTTATCAGCCGGAGGAATTGAACCGCCATTACCACCTGACGATGTTCAGCCTCCAGCTATTCCTGAACCTAAATCGCTTGCCGATACTGGCTTTAGGAGTCACTAATTATGAGTATGTGTGTGGTTGTGACCGAAAATGTACCGCCCAGATTAAGAGGTCGTTTAGCCATTTGGTTGCTAGAAGTTAGAGCGGGAGTTTATATTGGTGATATATCCAGACCAATTAGAGAAATGATATGGCAGCAGATAATTGAATTAGCAGAAGAAGGCAATGTCGTACTTGCTTGGGCAACGAATACCGAATCCGGATTTGACTTCCAAACCTATGGTACCAACAGAAGAGTTCCGGTAGAATTGGATGGGCTACGGTTAGTTTCTTTTTTACCTATTAAAAATTAATAAGTTAGAGTTCTTTAAAAATTAAAAAAATCTGGTAGAATTTACCAGTCGATATAACTCTAAATAAAACAAATAGCTATGTTTAGA # Right flank : GTCGAACAAATTAAAATGAAAGTGATAAACGAATCTTTTACCTATATGTAAGTCATTAGGTCATTAAATATATATTTTATTTGTCCGTCATATTTTTACTGATACATAATAGATTAATTGATACTAAATATAAAAAATTAAATAAAATCAATGGTATTTCTGACATTTTTTATTAATTATTCTATTGTTTCATTAAACATTTAAAATGAGGTAGTCATTATCTTAATTGTTTTTTAATAAAGTCTTTATATGAAAACAACGTATAATCAATTAATTAAAACCCTAAAGGCATTTTTTTATTTATTGTAATGTGAAACTGAAAGAAAGCATTAATAATGCTGGCTAAAATAATTGGCAAAAATAGCGTACAATAGTGCAATATTTAACACAGGTTTATCATAAATAGTTTAGGAATTTAGTATGGCAGGCAAATTTATTGTCATCGAAGGGCTTGAAGGGGCAGGCAAAACAACGGCTATTAATACCGTTGCTCGCATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACCCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59356-60044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000002.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 59356 28 100.0 32 ............................ ATCTGATAGTCAAATAAACAATTGGAGAAAAA 59416 28 100.0 32 ............................ TTCAGAAGTTTTAGAAATTAGCAATAAAAATG 59476 28 100.0 32 ............................ TATCTTTTTACCGGAGGAAGTTGATGAATATC 59536 28 100.0 32 ............................ GTCTAGGCGGTTATTATTTTTTGAGCGTCATT 59596 28 100.0 32 ............................ AATAGTAACACACTGCGTATACTAATAGTAAC 59656 28 100.0 32 ............................ GTATTTCGCACTAGAACTCGTGGACGAGTTTT 59716 28 100.0 32 ............................ TAGGTGTCCAAACGTCTTTATGTCTAGCCGTC 59776 28 100.0 32 ............................ TTCAGTTAACTCACAGTACTCATCTCAACATT 59836 28 100.0 32 ............................ TTGGAGTAGTGACAACGATTTAGGATCGAAAG 59896 28 100.0 34 ............................ AAAATGGTTATACTCAAAATTATATAATGATTTA 59958 28 100.0 32 ............................ TGATACCCGAAAAAAAATTCCTGATACCCGAT 60018 27 85.7 0 ............A..........-T..T | ========== ====== ====== ====== ============================ ================================== ================== 12 28 98.8 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : TATATCATAGCTGATTTGTTATTAATTTTCTATCTATGAGCTTTGATTTGCTTTATTAAGGTTGATAAATCCAACCTTAATCATTTCTCTGACTTTCATGTATCCCAAAAATTTGAGCTGGTCGCGCTTCTTCATTCTATTGTTGCTTGAAAGTTGTTGATGAAAATCATTCAATATCTTTTAAGAAAGATAGGGAAGAATTTAATTGATATAGGCTATTTTTCTATTGATAGGTAGATAAAATCAGAATCCGAAAACGCTTAACGCTATTTTTAAGGCTTTTATTAAAAAATTAAGCAAATTGATCTTTTGGTTTTTAGGTTTGGGTAGTACTAAGTCATGACACAGTCAAAAAACTAAAAAACAGAACCCTTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAACTCACCGCAAAAAAGGGTTTTTAAAACCTAAATAGCTATTTGCCTTTTTACATACAATATTGATAGTATATTAGCTTCTA # Right flank : TTCATCACGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAGCCTAAAACGTAACAGTTGTGTAAATACTTCATAATGAGCATACAACTTAATAAATAATTACGCCGCTTGTTTTTGTGTTGTATATGCAATGGAAATCATGTTAGTTGATGTTTCATGAGGTCTTTTGGGGGTAGATAGCAACGGGTCATAATACGTTTAGCCAAATCAATGACGGCTATTTTTTTATATCATCGCCATAACACTTGTTGATGATATGGCGTTGTTTTTTTATATATTTATTAGAGTCATTTTTTTACTACTGTAACCGAAGCAAGTAATTTCTAACCATTATATTAATAGGGTATTTTTAATATCTTCGATCGTTTTTGTGCCAGCTAATTGCATGGTAATAGACAGTTCTTTGTTAAGATGATCAAAGACGGATTTTACTCCCTCAGCTCCACCTAAATTTAGACCATAAAGAATAGGGCGTCCAATAGCAACAAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18016-17374 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000024.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18015 29 100.0 32 ............................. AAAAACAAGAGGGTGGCAAAAAGAGATGGACA 17954 29 100.0 32 ............................. TTCACTATCCGTTAACTCTCAGTTATACTATA 17893 29 100.0 32 ............................. AATGAAATAATTATTCAACTAGGTGAAAAATA 17832 29 100.0 32 ............................. CTCCTTGGCCAATGCTTTTAGCCCTTTTGTAA 17771 29 100.0 32 ............................. CAGGCGTTAATGACCGGGTTCAGCGAAACTGT 17710 29 100.0 33 ............................. CCAAATAGGAGGGCGCTATGATTAATAAATGGC 17648 29 100.0 32 ............................. TTAGCCCCTTGAAAATCGATATTGCTCAAGTT 17587 29 100.0 32 ............................. GACTCACTGCACAGGAATACGATGATGTAGTT 17526 29 100.0 32 ............................. ACGCACGGAGGGCTATACCTCTACCCATCTGT 17465 29 100.0 32 ............................. GGCTTGCTGTCTAATGAATGTTGATTTACCTG 17404 29 89.7 0 C..........................TC | A,A [17379,17383] ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTTATAGTATTGTTTTAAGCATAAACGATAATGGAAACAGAGTATAAACCATTTTAACGCAACGTTAACCTTTTTAATCAATACTTTTGCTTAATATCAATAATATCTGTTAACTAAACGAGTATCTGGTAGCTGCTTAACGCCTTTATTTAAAAAGCGATTTAAGCAACGCCATACTTTATTAAGTATATTTTTTAACCTGTTAAATGAAAAATAATTTTATGCTGAAGCGGTATAGATTTTTGGATATGTTAACCAGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAAATATATGAAATTTAAAGATTAATTGGTAGAATGAAAAATCCTAATATTCTCTCTATTTTATCCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTAGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGA # Right flank : TCAAACTAGAATGGCTCATAGCGATGAAAAATCAACTAAATTTTATACCAAAAACCATACCGAATGGGTTGAAGTTCCGCACATCCAAATCGTAATTTAAGCGGGGGTAAAACTCGTTTAAGTTATTGATATCTATAACACTCCCTAAACCCCTGTTTTTTCTTACAGTTAAAAGCAAATAATTAATTGAATTATATCATTATTTTTAGTGTTAGAACCTAATTTTAACATAGTGGGGGGTCAGTGGTTAGAGTCCACCTAGGCGTACCATTCTAAAGCCTTACCTAAAAAGCCTTTAAAGTGATTACCTTAAATCTATCTTTTATTAGTGAGATAAAATGAGGGTAAAAATGATATCATCGAATAGCTCTTTAAATGCTAACAACTTCAAAATAAACAAATTTTTCGCAAAAAACCTCAATAAAATCAATACTTTTCCTGACCAATTTTTTGCTTAAAATTTGAGTTTTATTTTGGTGGAAGGAATGTTGCTTATTTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 573-1457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000025.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 573 29 100.0 32 ............................. TTTGCGCGCTATGTCTTGAACTGATAGCGGTT 634 29 100.0 32 ............................. AAATCGATCACCAGTCATCCGATGGCAGTATG 695 29 100.0 32 ............................. TGTGATATTTATGTAATTAAGTTGCCGGGAAC 756 29 100.0 32 ............................. GAGGTTTTAAAGGTGGTTAATGAGTTGAGGGA 817 29 100.0 32 ............................. CGTTGATACGTGTTTTTACTCTGCTGAGCTGT 878 29 100.0 32 ............................. AAACTGTACAAGACATATATCAAGTGGTGGCC 939 29 100.0 32 ............................. TAATGAAAATGGTGAGGTCGCATTTAGAATTA 1000 29 100.0 32 ............................. GTTACCTAAAAGGTTGTCCTTATACTCCAATC 1061 29 100.0 32 ............................. GAGTAAATAGAATGAATGTTAAAATAATGTTT 1122 29 100.0 32 ............................. ACTATTTCCCATTTTTTGAAAACGGAATGGAA 1183 29 100.0 32 ............................. CTAACGAAATAACATGGTTTAAATTCGAGGGT 1244 29 100.0 32 ............................. ACATTTTCCCGCTCGTCGGCGATATGGATATC 1305 29 100.0 32 ............................. TTAAAGATTGATGCCATCTGTATTTCCATTCA 1366 29 100.0 32 ............................. GGCTTGCTGTCTAATGAATGTTGATTTATCTG 1427 29 89.7 0 C..........................TC | A,A [1445,1448] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTTATAGTATTGTTTTAAGCATAAACGATAATGGAAACAGAGTATAAACCATTTTAACGCAACGTTAACCTTTTTAATCAATACTTTTGCTTAATATCAATAATATCTGTTAACTAAACGAGTATCTGGTAGCTGCTTAACGCCTTTATTTAAAAAGCGATTTAAGCAACGCTATACTTTATTAAGTACATTTTTTAACCTGTTAAATGAAAAATAATTTTATGCTGAAGCGGTATAGATTTCTGGATATGTTAACTAGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAACTATATGAAATTTAAAGATTAATTGGTAGAATGAAAAATCCTAATATTCCCTCTATTTTATTCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTGGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGA # Right flank : CTCAAGCTAGAATGGCTCATAGCGATGAAAAATCAACTAAATTTTATACCAAAAACCATACCGAATGGGTTGAAGTTCCGCACATCCAAATCGTAATTTAAGCGGGGGTAAAACTCGTTTAAGTTATTGATATCTATAACACTCCCTAAACCCCTGTTTTTTCTTACAGTTAAAAGCAAATAATTAATTGAATTATATCATTATTTTTAGTGTTAGAACCTAATTTTAACATAGTGGGGGGGCAGTGGTTAGAGTCCACCTAAGCGTACCATTCTAAAGCCTTACCTAAAAAGCCTTTAAAGTGATTACCTTAAATCTATCTTTTATTAGTGAGATAAAATGAGGGTAAAAATGATATCATCGAATAGCTCTTTAAATGCTAACAACTTCAAAATAAACAAATTTTTTGCAAAAAAACCTCAATAAAATCAATACTTTTCCTGACCGATTTTTTGCTTAAAATTTGAGTTTTATTTTGGTGGAAGGAGTTTGATTATTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40956-40439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000025.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40955 29 100.0 32 ............................. GATTTGCTCGAGCAAGCAAAATCATTGTTATC 40894 29 100.0 33 ............................. CGTAATTGCAAAAATCATCAAAACCCTTGTATT 40832 29 100.0 33 ............................. TATACTTTAATTAGCTACGCAAGGAGTAAATAG 40770 29 100.0 32 ............................. TATCAACCAGCATTAACGCAATTACTAAATCG 40709 29 100.0 32 ............................. TAAACTCTCGGTTATCATTAAGTGGACATTTA 40648 29 100.0 32 ............................. ATATTTGTGTCGGTTTCAATAGCGGTAAACAA 40587 29 100.0 32 ............................. CCATTGAAGAAGCCGTTAAACACGCAGATGGA 40526 29 82.8 30 ...........G............CCG.T TATTGACGAAAACCCCACTGCAGAAGAGGT 40467 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTTATAGTATTGTTTTAAGCATAAACGATAATGGAAACAGAGTATAAACCATTTTAACGCAACGTTAACCTTTTTAATCAATACTTTTGCTTAATATCAATAATATCTGTTAACTAAACGAGTATCTGGTAGCTGCTTAACGCCTTTATTTAAAAAGCGATTTAAGCAACGCTATACTTTATTAAGTACATTTTTTAACCTGTTAAATGAAAAATAATTTTATGCTGAAGCGGTATAGATTTCTGGATATGTTAACTAGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAACTATATGAAATTTAAAGATTAATTGGTAGAATGAAAAATCCTAATATTCCCTCTATTTTATTCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTGGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGA # Right flank : TATCAATACGCATTAATAAACATTAATCAAGGGTGTTTCGTATACCTATAGGATTTTCATTTTCGCCCATCTTTACAGAATATGACCTAAACAACAAATAGCTTGCTCTCTTGCTATTGAATTTATTATGTTGTTTTATACTAAAACATAGGTATTACCTGAAATTTCTTGACAAAAAACATTCAGTTTTTTTAAGAAATATCTCTTTTTTATCCGCTAGGCGGGTTATTAATATGTATTACTGTTTGCTTTTATTTAGTCGCTAAATCTAAAAGTTACCATTGTCTACATTAAGCATTTCATTTGAAATAGTTTCATACAATTAGCTTTTTAATAACCTCACAATTTCTTCAATATCATTCGGCGTTGTTTGGCAGCAGCCGCCAATTAATTTTGCGCCTAATTTAACCCAAGTTGGCAGTTGATTGCTGAAAGTGCAATTATGTTGATGATTTTTGTGCCACTGTTTAGTGATTGGATTGTATTGTTCACCTGAATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46936-47393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000039.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46936 29 100.0 32 ............................. TCACTTGTTGCTTGAATCCCTGCATCTAATCC 46997 29 100.0 33 ............................. GGTCTTTCATTCACGCAAACTAAACATGGTTTT 47059 29 100.0 32 ............................. TTATGCTCGTTATAATGAAATTATAGGTGAAT 47120 29 100.0 32 ............................. TTTGTATTTGTATATTACACCATCAGGTACTA 47181 29 100.0 33 ............................. GGGACAGGCATAAACTACGAAATGATTCGCAGA 47243 29 100.0 32 ............................. ATCAGATAAGCATGATTCGCAGAAATTCAGAA 47304 29 100.0 32 ............................. CAACAGGACGCGTCATTGATATTGTAGGTAGA 47365 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : ACAATATATTAATTTATTTTTGGTAAAATACCTAATGATTTTTTAGAGGTTTATTTTGATAATGAAGTGTAAATAGTTCGGTGTTTTTCTACATAATTTATTGTTATTTAGCATAATAAAACTATTAACATTATCATTTTGATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTTATATGGGTAATATGTTAATAAATCACTTTATAAATGACTAAATGTTTAATCTATTATGATCAAAAAATAGTTCAAAAATAAATGATTGTTGATTTTCAATATAAATAATCAATTTTTATCTGTAATTTAGTTATAAATATAAGAAATTTAAAAATTAGTTGGTAAAATAAAAAACGTCCAAAATTCTATTTGTGATTCTTAGTATTAATTTAATAAAAACAACCTATTATAAATTAACTCTTATTTTAAAAATAAGCTAAAAAGTTGGTGGAAATTTGGTTGCCAATATTTTCTTTATAAAACATTATGTTATAATTGGT # Right flank : GATAGCCACATTGTTCACTTTCTTTTATAATATTGTTCTATTTTTATCTATGGTTGGCTTAAAAAGAGTAATTGGCATGAAAATTTTAGCTGGTTCTTCTGCTTTGTCTGCATTTCGTTGTAAATACCCCAAACTTAGTACAAGATTCAAGTAGAAAATCATGCTGTTTGTTTTAGTGTTTTATATTCGAGCGGTGTCATGTTATTTAATGCCTCATGCGGTCTTTCGGTGTTATAAATCGTTAACCATTCTTCGGTTATTCTCCTTGCTTGCGCTAAGTTGTTAAAAAGATATAAATCGAGTACTTCAGTACGATAGGTGCGATTAAATCGTTCAATGTACCCGTTTTGATATGGGCTACCGGGCTCTATATAATCAATGGCTATATCATGTGATTTAGCCCAGTTTATAAAGGTTTTTCCTGTAAATTCTGGTCCATTATCGACGCGTATTTTTAATGGATAGCCATGATATTCAGCCAGTTTATCTAAGTAACGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216992-216006 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000035.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 216991 28 100.0 32 ............................ TTGTCATCAAAATCAAATTTCCCACCAATCTG 216931 28 100.0 32 ............................ ATTTTTATTAGGTTTACCTCTGTTAGCGGCGG 216871 28 100.0 32 ............................ AACCCGACGTCCCTTGGCCGTCTGTTATTGAG 216811 28 100.0 32 ............................ GTACGGTGAAAATGTGGTGCAATTATTCAACA 216751 28 100.0 32 ............................ TTTATCGCGTTAGCTTCGGAGCCCATCGCTCT 216691 28 100.0 32 ............................ AGATGATGAGGGGCAATTGTTAGTTGATGAAA 216631 28 100.0 32 ............................ TGTCGCAGGAACGTTAATTTTGGTTTCTGGAT 216571 28 100.0 30 ............................ GTTAATATTAATAGTAGTAATGATAATAAT 216513 28 100.0 32 ............................ AGCATCCGATAGTCACCAATTCACGCTTACAG 216453 28 100.0 32 ............................ TGTACAGGCTACCACTTATTTTGATGATTATC 216393 28 100.0 32 ............................ AACAGCATGATCCCATTAGTCGCTCACAGATT 216333 28 100.0 32 ............................ AGCAATAGATTTGTATTACGTAGAGTATCGCC 216273 28 100.0 32 ............................ GGTTATCGATATTTACCACGCTGACAAATTGG 216213 28 100.0 32 ............................ AAATCGATAATATCCTTCATGCCGATAATATG 216153 28 100.0 32 ............................ ATCTAGCCGCTGAGTTTTTCGCACATCATTAA 216093 28 100.0 32 ............................ AATATAGGCAATCATCGGTTTAGCACAGCCAT 216033 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : CAAGCAGATATACAGCAAAAATCATCAATTAGTGATTATGCTTTACTGATGCCTATCACTACAGTGCCGACGACGATAAAAGGCCACCTACGTTTTATCCGTGTTAATCCAAAGGGTCAGAGTGCGTTAAGGCGTGCAGAAAAACGATTAACAGCACAAGGTAAATGGACGCCTGAAGTGAAAAATAAAATGATTGAAAAGTGGGGAAGCGTTCATTTGCAATACCCACACCTTCATTTGAATAGTAAAAGTACAGGGCAAAAATTTATTTTGTGGTTAAAGCAAGAAAAATGCCCAGAGCCAGTACAAGGCACATTTAATAGCTATGGACTAAGTCAAACCGCAACGGTTCCTGATTTTTAAATTTCAAACCCTTTTTTCGATGATAATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGCTAAAGTGCAATATGCTCTTTTACAATAAGGCACTATTGAGATAAAATTCTA # Right flank : CTGTTCAGATTTAAATGACATCATTGTTGTAACTTCAATAATCATTAAGTGCCACAATATAGCCCTATCAATGTGGTTTAACCGTATTATAAAAGTGAATAAATTGCTTAAACTTTTGTTTTATTTTTTGAATATTTGTTGATTATGCTAGATTTCAATTAAAGTGTGTATCGCTCTTTTCGACTTTTTTAATCTTGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAACAGTTCAACTTTAACTAAACGTTTAATTCCATAACGGATGGCCTTATCATATTTGCCCTGGTTAAGGGGATGGGCAGCTTTAATCGGGCTTTCTTTAGCACGTTATAAATGGTCGAACAACTGACCATAAAACGTTTTGCTAAATCAGTGACGGTTAGTTTTGTTTATGATATCAGCGCCATATCTCTTGTCTGTGATATGGCGTTAATTCGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298907-299608 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000035.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 298907 29 93.1 32 ...........................GA CACACACACACACACACACACACACACACACA 298968 29 93.1 31 ...........................GC GCAAAACTGGTATGTTAAATGTGAAAATGAG 299028 29 100.0 32 ............................. TAGCATTAGTGTTGAATGCCTGTAGGGATGCT 299089 29 100.0 33 ............................. TTCACCATGCGTAACTAAATGACAACTATATGT 299151 29 100.0 33 ............................. TGAATAAGGAAGAATTAGATGAAGTTTTGTTAC 299213 29 100.0 32 ............................. ACGCAATTAGGTCACGATTAAAACAATACTAT 299274 29 100.0 32 ............................. CCGAAATCCGCACCGAACAACAAACGGTCGGC 299335 29 100.0 32 ............................. TTTACTGCTCTAGAATTGCTTAAATTTGATTT 299396 29 100.0 32 ............................. CAAGAATGTACAACGGCGCTTATTGGGTTGAA 299457 29 100.0 32 ............................. TACCCTGAGATGGCGAAACGACTAGATCCAAC 299518 29 100.0 33 ............................. CCCTTGCGTTAAGGCTTCATTTCGTTGTTTGGC 299580 29 93.1 0 ..........................A.C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 CTGTTCCCTATACACATAGGGATAAACCG # Left flank : AAGCATAAACGATAATGGGAACAGAGTATAAATCATTTTAACGCAAAGTTAACCTTTTTTGATGGATACTTTTGCTTAACGTAAGGAATTTTTGTGAGTTAAGCAGGTATCAGATATAAGGTATGTAGTAGCGACTTAACGCCTTTGTTTGAAAAAAGCAATTTAGGCAACGTCATACTTTGTTAAGTACATTTTTCAACCAGTTAAATTAAAAATAATTTTATGCTCAAACGGTATAAATTTCTGGATATATTTAACAAGAAATTCCGTCTTTTTAATAGAGAAAAGCTCATTTTTATTGCTAATTATGTTATAACTATATGAAATTTAAAGATTAATTGGTAGAATAAAAAATCACAATGTTCTCTCTATTTTTTTCTAAAATTACTTTAATAAAAACAATGCATTATAAAATCATGGTTATTTTAAAAATCATTGAAAAAGTTGGTAGAAATTTGGTGTTAAATATTTTAATGATAAAACAATGTGTTATAATTGGT # Right flank : CGTGACAAAATTTTTATTTATAATTTATTGAAAGATTCAATAAATTATGTGATAACTATCATACAGATCAAAAAGTCATTAAACCTATCTACCTTAAAGTAAAAAGAGCGATAAGCGCTTTGACTAAGATGTGATATGCCAAGTATTTAAAGATGCACAAGAAAAAAGATTAAACGATTACGTGTACAATTTTCAATAATGTTTAGATGACTATGTAAAACATGCAGTATAAACAGTTCGGCGTTTTCTAATGAATTATGTGAATTTAATAGATTTTATGTGACTTTTAAAGGTGTTATTGAAGCAAGTTAACGTTGTGCAAACTAATATTTATGAATCTCTAAATTAAAAATATTCTACTTGAAAAGTAGAATATACTTTTTTAAAGTAGGTAAGATCATTTAAATAAGATCTTTTTTACCACGCTCTACAAGTCCCAAACAAAGTCTCTGGGACACAATATTCAAAAAACAATTGAGTATTTATCCCTCAAGGCTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 312329-311820 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGS01000035.1 Gilliamella apicola strain App4-10 Gilliamella_apicola_App4-10_contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 312328 28 100.0 32 ............................ TTTTTCTAAAATGCGGTTATAAATTGCAGTTA 312268 28 100.0 32 ............................ CATTGCCGTTGCGCCACACACCGCAACAGGCA 312208 28 100.0 32 ............................ GTCGCATTCAATGCTGTGTCGCAATAAATCCA 312148 28 100.0 32 ............................ ATTTAAGCCGTATTTTAACTGTCCAACATAGA 312088 28 100.0 32 ............................ TGCGTAAAATCCGGCTGCAGATCCTGATATCT 312028 28 100.0 32 ............................ ATTGCTTCACCAAATGTACTAATTGTCACTTT 311968 28 100.0 32 ............................ ATTCTAGAAGGTAAAATGGTTATACGTCAAAT 311908 28 96.4 32 ..................A......... TAGCTCCCTCTAAGCTGATGAAAGAATAACGC 311848 27 92.9 0 ...............C........-... | AA [311827] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : CCCAAGATGCGATTTTTGGACTACCGGCAGAATCAACCGATGATTGCAAAATTTTCCATGCCGGTACTAGTTTAGAAAATGGCAACTTATACACCAACGGTGGACGAGTGTTGTGTGTGACCACATTAGGAAATACGGTACTCGATGCACAACAGCGTGCTTATCAGCAAATAAAAAGTATTTATTGGCATGGCTGTTTTTATCGCCATGATATTGGCTATCGTGCGATTGAGCGGGAACAAAACAAATAGTGGTGATTGGTTGTTTTTTTGAAAAAAACAACCAACTACTAACTAACAATTAGTCAGAAAACGTATTGATTTTATTTAATTTATTTTTTTAGAATTTTTTTGAATTAAAACTTCTGCTAACCCTTTTTCTAACAACAATTTAAAATTCAATAAAATCAGTATATTAAAAAACAGCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTCGTTTATCTTTATAAAGCAGGGCTTATCGAATCTTAAGTTCTA # Right flank : TAAAATCATCAAGATAATTATAAAAACAAAATAACCTCCAAAAATAATTGACTATGTTGTTTGTCTTATTCCTGTGTCAGAATATGACGCTAATATAGTCAGTTAGCACGCTAAATAGGGATGTTTGGCAAGGCTATGCTATGCTTTGCCGAGAGCCAAATTTGTTTGGAACAAATTCGAGCATCTAAGCAAATCAAAGATGGCCTCGATGAGGGCGAGTATCAGGATGATACGAGTAATTGCGCTGGGCAGCAGAAGGTCTCATTCTGCTGCCCAGCGCGGGGGGGTTTTTAGGGGAATTCGCAAAAAACTAACTCGGACGTGGTCATTATAGCTATTTGGAGCACCTAAACGACAAACGTCCGAAACCACTGCACCCAATTTACTCCATTCACAAAAATAAAAAGGCTTTATTTTTCGGCAACAAACGTTCCCATTATTTGGAATTTTGATTCTTATCGTTTTTTAAGTCTAGTATCGAATACTGACAAAATCCTACA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //