Array 1 192466-193094 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLE01000023.1 Pseudomonas aeruginosa strain Pae_CF67.03h CF67.03h_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 192466 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 192526 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 192586 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 192646 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 192707 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 192767 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 192827 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 192887 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 192947 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 193007 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 193067 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21794-23142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLE01000055.1 Pseudomonas aeruginosa strain Pae_CF67.03h CF67.03h_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21794 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 21854 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 21914 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 21974 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 22034 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 22094 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 22154 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 22214 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22274 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 22334 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22394 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22454 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22514 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22574 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22634 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22694 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 22754 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22814 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22874 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22934 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22994 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 23054 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 23115 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33662-32017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLE01000055.1 Pseudomonas aeruginosa strain Pae_CF67.03h CF67.03h_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33661 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 33601 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 33541 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 33481 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 33421 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 33361 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 33301 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 33241 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 33181 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 33121 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 33061 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 33001 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 32940 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 32880 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 32820 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 32760 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 32700 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 32640 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 32580 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 32520 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 32464 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 32404 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 32344 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 32284 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 32224 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 32164 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 32104 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 32044 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //