Array 1 218734-218086 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670843.1 Flavobacterium psychrophilum strain OSU THCO2-90 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 218733 27 100.0 42 ........................... TGCTATTGGAAATTCTGCTTTTGATACCTGTAAGAGCTTAAC 218664 27 92.6 42 .........T..C.............. TGCTATTGAAAATTATACTTTTTATAATTGCAATGCTTTAAC 218595 27 100.0 42 ........................... CTCTATTGGAGAGGGGTCTTTTGCCCATTGTTCTAATTTAAC 218526 27 96.3 42 ......C.................... TGATATTGGAAGGCGTGCTTTTAGTAGTTGTACTGGTTTAAC 218457 27 92.6 42 ...A.....A................. TGTTATTAGAAGGGGGGGGTTTACAGGCTGTTCTGGTTTAAT 218388 27 92.6 42 ...A.....A................. CTCTATTGGGGATTCTGCTTTTCTAGACTGTTCTGGTTTAAT 218319 27 92.6 42 ...A.....A................. TTCTATTGGAGAGGAAGCTTTTAGAGACTGTATGAAACTAAA 218250 27 92.6 42 ...AA...................... TGCTATTGGAAATTCTGCTTTTGATGCCTGTAAGAGCTTAAC 218181 27 92.6 42 .........T..C.............. TGCTATTGAAAAGTATACTTTTTATAATTGCAATGCTTTAAC 218112 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 10 27 95.2 42 ATCGGTTACCATTCCTAATTCTGTGAC # Left flank : CTTTTTCTATTCATAACATTATACAAAAAAAGCTTCTAAATAAAAAAAAGAACATTAACCAATATTTTGATGAATTTTAGTCCCTAATTAATCGTTTGCAAAGCCAAATATAACAAAAAGAACAGCAAAATCAGACAATTGCAGGCATATAGAAACAACACCTACTTAAAGACCAATCTCAAAAAAACAAAGTATTATTTGTATTTATTCTAAATCTAGCTTATTTTTGTAAACCCCATAATTTTTTAATTAAAAACAAAAAACATGAAAAAATTATTATTTTTTATTTTAATTCCTTTTTTAGGAATAGCGCAAGATTTTACAGCAAACGACATAAATTATACTGTTACTTCTTCAACAGCTCCTTTTACTATTAGCGTAACTGACAACCCTAATTTCAGTGGAGCTGCGGTAATACCAGAAACAGTAGCTTACAATTCAGAAAACTACACCGTGGCTTATATTAAAGAACGTGCTTTTCAAAATTGTTCTAATTTAAC # Right flank : CTCTATTGGAGAGGGGTCTTTTGCAGACTGTAGCAGTTTAAGAACAGTAAATTGTCATATTACAAGCCCTTTAGTTATTAATAAAAATGTCTTCGGTAATGTTACTCAATCAAACTGTGCTTTAAATGTTCCTACTGGTACGCAAGCTGTTTATCAGGCAGCGGCTGTTTGGAGAAATTTCAGCCCTATTTCTAGCAGTTTACTTTCTAATCATTCATTTGCGATAGAAAGTGCTTTAAAAATATACCCAAACCCTGTTTCAGAAATTTTAAACATAGCTTTACAAGAGGGCTTACAATTACAAAAAGTAAATTTTTACAACACATTAGGGCGGTTAATAAAAACAACTAATCATTCAGAAATAAATGTTTCAAGCTTTGCAAAAGGAAATTATTTTGTAGAAATAATGACAAACCAAGGTAAGGCAACAAAAACAATCATTATACAATAATTAAAAACAAAAAACATGAGAAAATTATTATTTGTCATTTTAATTCCTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGTTACCATTCCTAATTCTGTGAC # Alternate repeat : ATCAGTTACAATTCCTAATTCTGTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1393582-1396738 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670843.1 Flavobacterium psychrophilum strain OSU THCO2-90 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1393582 46 93.5 30 AG...A........................................ ATGGCTTACTTCATAACAGGAGTGATTATA C [1393585] 1393659 46 100.0 30 .............................................. AAATTATGAATATTCAAGAACAAATAGATG 1393735 46 100.0 30 .............................................. CGGACTTCAATAAAATTTCAAATGTACGCA 1393811 46 100.0 30 .............................................. TTCCCTCTGCGCTATCGTTTTCCTTTTGCC 1393887 46 100.0 30 .............................................. TCGCTTTTTTCTAAAATAAAACAAAAAACG 1393963 46 100.0 29 .............................................. AACATACCATTTACAGGCGTTTACGATAC 1394038 46 100.0 30 .............................................. GAGGCTACATTTACATAGCGTATCAAGTCG 1394114 46 100.0 30 .............................................. TTTCTTTTTTGAGTCTTTTCATAGCTTCTT 1394190 46 100.0 30 .............................................. AGGAGCTAAATGCCCGAATGTATCAGCTAT 1394266 46 100.0 29 .............................................. TCGTATTTTTCAATTATAGATTGTAATGT 1394341 46 100.0 30 .............................................. TTTCAAGTAGGCTTCTATCGATAGCCCTGT 1394417 46 100.0 30 .............................................. TTTGAAAACCGTTTCATCAAGGATTTGACT 1394493 46 100.0 30 .............................................. TAAGTCCATCGCCAATAATATAATTAACCG 1394569 46 100.0 30 .............................................. TTTAAAAGAATTGTTTTCCATAATTATTTA 1394645 46 100.0 30 .............................................. TTGGGAGGGGAATATTACAAGCAAGAAATG 1394721 46 100.0 30 .............................................. TTTCTTTTTTGAGTCTTTTCATAGCTTCTT 1394797 46 100.0 30 .............................................. AGGAGCTAAATGCCCGAATGTATCAGCTAT 1394873 46 100.0 30 .............................................. CGGTTATTATCGCCGCCTTTTGTATCGCTT 1394949 46 100.0 29 .............................................. TTTAAGCGCTAAGTAGATTGTTAATGCGT 1395024 46 100.0 30 .............................................. AGATATATCGCAGTGCGTTAGATGCTTATG 1395100 46 100.0 29 .............................................. TTTTAATATTACAATTGAAACTGTTGGCT 1395175 46 100.0 30 .............................................. TTTTCCACGTTAATACCATTTCCCCACAAG 1395251 46 100.0 29 .............................................. ACACTTAAATCTTTTAGGGTTTAAGTATT 1395326 46 100.0 30 .............................................. GGTCGAGGATATGATTAACACTAATCCTAT 1395402 46 100.0 30 .............................................. TTTATAAGCTAACACTGTTAATCCACAAGT 1395478 46 100.0 29 .............................................. ACTTTTTTTGCAACAACTGGATACCGTTA 1395553 46 100.0 30 .............................................. CTCGCACTATGGAATACGTAGGAGTGAACA 1395629 46 100.0 30 .............................................. TAATTTAACTATCTCTATTTCGAGTGAAAG 1395705 46 100.0 30 .............................................. GTTAGACCCATACGTACCCAAGTGTCCCCG 1395781 46 100.0 30 .............................................. GGAACACGTTACACGTTAAGTATGGCAATA 1395857 46 100.0 30 .............................................. TTCACTTGCGCCCCTGCTTCGATACCCGCT 1395933 46 100.0 31 .............................................. GTTGATACTAGGCTTAGATTTGCTGTTGCGG 1396010 46 100.0 30 .............................................. AAGCTGAAATATACTAGCTGTTAAGGAATC 1396086 46 100.0 30 .............................................. CAACTAAAAAATGGTTTGTGCAGTTCTTTT 1396162 46 100.0 30 .............................................. GGTAGCTCCCAAGAGATTCGCACTTTATTT 1396238 46 100.0 30 .............................................. AAATTCCGTGAAAACAGTTGTAGATAAGAA 1396314 46 100.0 29 .............................................. AGCAAAGAAGAAGAGATAGGCACGTTGCT 1396389 46 100.0 30 .............................................. TTCTGTAAATAAATCCCAACTTCGATGTTA 1396465 46 100.0 30 .............................................. AAATAGTATGTGAAATAGTTGTTCGACACG 1396541 46 100.0 30 .............................................. AAGAGTTTCCTTTTTTAAACTTTTGTATAG 1396617 46 100.0 30 .............................................. CATAATGGATGCAAAAGAAATACACCAGCA 1396693 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 42 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ACAAACACAAATTTGCGTGGTACATCAAATTAGAAACGCTTGCAGATACGTGGTATGGAAAGATAAAAAACAATTTACATCCGATATGAAACTTGTTTATACCGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTATTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTAATTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //