Array 1 68331-67583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMZ01000003.1 Halobacterium hubeiense strain JI20-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68330 30 100.0 33 .............................. CAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGG 68267 30 100.0 34 .............................. ACTCGGCAAACAACGCCGATTATGACTATGACGT 68203 30 100.0 34 .............................. GACTTTCTCGGGCGGATGGGGCTCGGGACCGGCG 68139 30 100.0 35 .............................. GCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGC 68074 30 100.0 36 .............................. GTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGC 68008 30 96.7 36 .............T................ TTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAG 67942 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 67877 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 67810 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 67743 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 67678 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 67612 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 96.7 35 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : GTGGGATTGAAGCGACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAGGTTTCAGACGTACCCTCGTGGGATTGAAGCGTCGACATTCGATGGTGAACCATCGGTCGGCGCCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGTCACCGACCGGGATTACATCACCAAGAACCCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCAGTTTCAGACGTACCCTCGTGGGATTGAAGCGTGGGGTCGGACTGGAACGCCCACCATCCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGTGACTGGATGACCGTCCAGTGCGG # Right flank : AGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 76774-68489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMZ01000003.1 Halobacterium hubeiense strain JI20-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 76773 30 100.0 37 .............................. AGACTGACGAAGTCCAGTGGGGGAGCGAGACCGGCGG 76706 30 100.0 34 .............................. TCCCGCGGGACGCCAGCCCGGTCGGCGACCCCCT 76642 30 100.0 34 .............................. AGCGAGCAGGTCCCTGCGGACAAGGTCCGCTGGT 76578 30 100.0 37 .............................. CGTGTCAATCAAGGTTTGTGGGCCGCCCGCCGGCCCC 76511 30 100.0 36 .............................. CTTGAGTCGGAGGGTGAGGAGTTTGAGACGGTGACG 76445 30 100.0 35 .............................. TCGTGCGGTTGGTCGCCGCCCGAACTCGTCGTCTC 76380 30 100.0 36 .............................. TTGGCCCGTGCGTGTACGGGGTCGGGGAGTTTCACG 76314 30 100.0 37 .............................. GGCACGAGTGATATTGATGCGATTGCTGACGACCTTG 76247 30 100.0 37 .............................. GTACAGGAACGACTCGGTGAGGATTTCAATACCGCGC 76180 30 100.0 36 .............................. ATCGACATCGGCTCGAAGGATACGTCGCCGCCGCGG 76114 30 100.0 36 .............................. CATCGGTCGGGTTGTCTGCGCCACGCCCCGGCCCGA 76048 30 100.0 34 .............................. TTCTTTCGCCACTTCGAGGAGGTAGTTCGCGATA 75984 30 100.0 35 .............................. CCACACTCACACACCCACGGGCCACTACTGCCGTA 75919 30 100.0 37 .............................. GGCGAATGGTCCTGTATCAATCCCCACACCATGATAC 75852 30 100.0 39 .............................. TCCTCAAGAGCGATACGGTCGCCAGCGAACCGGTATGGC 75783 30 100.0 35 .............................. CACAAGCGCCGCCGTGACACTCAGAACGAGCACGT 75718 30 100.0 34 .............................. CTCGCTGATGCGGTGGAAGGAACTCTGGCCGGCG 75654 30 100.0 37 .............................. GAGCCGGGGAACTCCGAGACCCTCGCGGAGTTGATGG 75587 30 100.0 36 .............................. AGGACGTACTGACGACGAACCTGCGCACCGTCGAGG 75521 30 100.0 35 .............................. GTCGTGGTTGCGGACCTCATCGGCGCTGATGTCGA 75456 30 100.0 35 .............................. GACTGGTCCGTGAATCAGAACGGCGTCCGCTCCCG 75391 30 100.0 34 .............................. CCGGACAGAGAGCACTCCCCACCGAGGCTCAACA 75327 30 100.0 36 .............................. GGTCCTCGTCGAAGAACACCGCGAACACGGTCACGT 75261 30 100.0 36 .............................. ATCTCGCGGCGGAGATAGCCGACCGACGCGAAGATG 75195 30 100.0 35 .............................. GTCGAGGTCCGTCTCGGTCGCCGCGACGACGGCGC 75130 30 100.0 35 .............................. ATGGTGTGAGGAGAACGGCGGCTATCATCCGATGG 75065 30 100.0 33 .............................. CAGTACCGCGGCAGCGTTGAGATGAATGGCGGG 75002 30 100.0 34 .............................. GCGGCCGCCGCACCGAACTCAAGCACGGCGCCCG 74938 30 100.0 36 .............................. AACATTCGGCTGCCGAACGCTCGCGAGCTCGCCCGC 74872 30 100.0 35 .............................. GGCTGGTGGCAGCGCAGCGGCGAAATCGACCAGAA 74807 30 100.0 36 .............................. GATCTGCCACATCGACGAGGCCTGGGTCGACTGGGA 74741 30 100.0 36 .............................. ACGAGACCATCGAGGTCCAGTCGACTCCAGATACCG 74675 30 100.0 37 .............................. TCAATCACGAGCTCGTCGTCGAGACCGACGCCCTCCG 74608 30 100.0 35 .............................. GAACTACTTGGCGCGAGTGAGGTGGACCGATGAGT 74543 30 100.0 37 .............................. TCTGCCTGCTCCCGCCAGTCAGTATATTCATGCGGCT 74476 30 100.0 33 .............................. CGCTAGGTTCTGCTCGTACCTAGTCCCCGGCAT 74413 30 100.0 36 .............................. GGCGGCCGCCGAACTGGTAGTCGGGCGCGCTCGGTT 74347 30 100.0 35 .............................. CGCGTCCACGGACAGCTCTTGGTCGTCGTCGTAAT 74282 30 100.0 34 .............................. GAGTGCGTCGCGGATGGCGTCCACGTGACTGCGG 74218 30 100.0 34 .............................. CACTCAAGCAGGCGGCCGACGCCACCATGCTTCG 74154 30 100.0 36 .............................. CGTCCGCCGGACGGCTGGCGCATCAAAGACGTCTGC 74088 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 74023 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 73957 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 73892 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 73826 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 73760 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 73693 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 73628 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 73564 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 73500 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 73437 30 100.0 36 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGTC 73371 30 100.0 38 .............................. TCGACGAGCTCGTGCTGGGTGGTCATCGTGAGTCGCTC 73303 30 100.0 35 .............................. GCCCTGGTAGCAGCGGTCAGCTACCCAGCCCGGCC 73238 30 100.0 35 .............................. AGGTTGTGGTTGAGGGGGAACTGCCTGAGGAGTCG 73173 30 100.0 35 .............................. AACGTCGCCTTACAGTCACGGCAAACTACGGTGCC 73108 30 100.0 36 .............................. ACGCTAAACTGCGAGCAGTGTGGCGGCCAAGTCCCC 73042 30 100.0 35 .............................. GAGGGTTGCGGTGTGGCCGTCGCAGTCGGTGACGC 72977 30 100.0 35 .............................. TCGCGGTCCCCCGACGCGACCCCCGACAGGAACGA 72912 30 100.0 38 .............................. AGCTGTGACATCGTCATCGATCGCGCGGGCGGGACCGA 72844 30 100.0 33 .............................. CCAGTCGCCTTCGCCGGAGCCGGTGACGACGGT 72781 30 100.0 37 .............................. TCCCGCAAGAGTCCGACGTCGCGAGCGGCATGACCGA 72714 30 100.0 37 .............................. CTGTTCCTCGCACTCGCGTCGCTGCTCGCGATGATGG 72647 30 100.0 36 .............................. CGCGAACATCGTCTCCGGGCAGGCCGACGAACCGGT 72581 30 100.0 36 .............................. GATAGCTCGCCGTCGACGAACGTCAGGTCATCCTGT 72515 30 100.0 34 .............................. GACCTGCGCAGCGCCGCCCGTATCTCCTGACGAG 72451 30 100.0 34 .............................. GCTGTCCGGAGTGCGGTACGGAGAACGGCTACGT 72387 30 100.0 37 .............................. GCGGTACCGACCCATCGTGAGGTACGGCGCGAGCGCG 72320 30 100.0 35 .............................. CAGTATGGCGAAGAAGACGACGCGCGACCAGCTCT 72255 30 100.0 34 .............................. TCGCGTACGTCTACTCACACGCCGGCATCCGCGA 72191 30 100.0 35 .............................. CTCGCGGTCCAGAAGGCTCAGGGTGACGTCCCCGA 72126 30 100.0 34 .............................. AGAAAGAGAGACGAGGGAGAGAGACGGTCTACGT 72062 30 100.0 35 .............................. GGTCGGCGTCGTCGACGACGTCGAGAGCGGGACCG 71997 30 100.0 36 .............................. GGGGTGAGGTCGCGGAGGTCGACGCGCTCAGTCACC 71931 30 100.0 39 .............................. GCGTGCAAGAACTTGAATGGGTGTTAGACGAATGACCGA 71862 30 100.0 36 .............................. CTGGGCGGCTACATCATTACGGACGGAGACATCGTC 71796 30 100.0 37 .............................. GGCGAGGGGCAGTGGACGATTAAGCCCGGGCTTCTCG 71729 30 100.0 35 .............................. GTCGTGAGTTCGTCCGTGGCGAGCGTCGTGCCGTT 71664 30 100.0 36 .............................. CTTGTACGCCTGGACGAGGGCGAGGTAGTCGCCGAG 71598 30 100.0 36 .............................. TGGCAGAGAGAGAAGAACTTACTAGCCGCTTCCTCG 71532 30 100.0 36 .............................. GACGTTCCCGGCGAGCCGGCGGCGGTCCCCGGCCGC 71466 30 100.0 36 .............................. GGAGACACGTCATACTCGTCGTTCGGGAGGAACGCC 71400 30 100.0 37 .............................. GGCTTGTTCGAGTCAGCACGGAGACGGCGCTTACTGG 71333 30 100.0 37 .............................. AACACGGACGCCGCGGGTAGTGGTTCGACGGGCTACC 71266 30 100.0 35 .............................. GGTACGCGTGTTCGTGCGCGGAGGCGGGGAGTGGG 71201 30 100.0 35 .............................. CCGCAGTGGGATGAGGACGTCGACGGCGTCACGCT 71136 30 100.0 36 .............................. AGACCGACGAAGTCCAGTGGGGCTCGGAGACCGGCG 71070 30 100.0 37 .............................. GCCGCAATCGTCGTATTTGACGCCGCCGAAGCCGGGT 71003 30 100.0 34 .............................. TGCCGTCACGCGCCCCGAGAGTGGCATTCTTAGA 70939 30 100.0 36 .............................. GTACCCCTTTGATGGGATTGTCGTGGAAGCCCCGGA 70873 30 100.0 34 .............................. TAGTCGTGCGTCGCCACCGTCGTTTACGTATAAG 70809 30 100.0 34 .............................. AAAGCCAGCGTGCTTCGGCGATGCAGGCCGCCGG 70745 30 100.0 37 .............................. AAGGGAGTCGTGGGGCAACGATTGACCCGGGAATGCG 70678 30 100.0 36 .............................. CCGAACGGCAGGGGGCCGGTGTGTCGCTCGTGTGAA 70612 30 100.0 35 .............................. CCCGCACGCAGGGCAGTCGTGGATGATTGAGTGCG 70547 30 100.0 37 .............................. CGCGACCCGCGCCCAGAGCTCGTCGTCGCTGGGGTCG 70480 30 100.0 36 .............................. TATCCAGTCGATGTGTTCGATGAATCGCGGGTCTAC 70414 30 100.0 37 .............................. GCGGAACTCACGGGTGAATCCCTATGAGTGGCGTTGA 70347 30 100.0 36 .............................. AGACCATCGGTTATGCAGCTCATGCTACAGATATGT 70281 30 100.0 35 .............................. CACCGGAAAGGGCGGATTCGTTGATGATGAGTGAT 70216 30 100.0 35 .............................. GGCGCAAGCCGTAAGGACGACGGTGAGACGAGTTT 70151 30 100.0 36 .............................. GGATCGCAGCCAGCCGCTGCACACGAATGGCATAGC 70085 30 100.0 34 .............................. ATGCGAGAGCACGCCGTCTCGGCCGTACCAGCGG 70021 30 100.0 35 .............................. CCGGGACGGTTGGCGTGATGAGCATCACGATTTTC 69956 30 100.0 33 .............................. CGCCGGAGGTCGTCGCGGTTCGCGTGAATGCGT 69893 30 100.0 35 .............................. AGGGAGAGGAGTCGCGGGCCGGCGTACGTGCGAGC 69828 30 100.0 36 .............................. TCGATTTCGACGGTCATCGTGCTGGAGAACTCTGCT 69762 30 100.0 35 .............................. GCTTAAGTTTACCGCATACGACCAACTAAAACCAA 69697 30 100.0 35 .............................. GGGAACATCACCGAAGTACGTCTTGTAGGGTTCGA 69632 30 100.0 40 .............................. GGGCACGCCCCCATCGACCTTCGGTCGTGCCGTGCCCGTC 69562 30 100.0 35 .............................. GACATGCCATTCGACCGGGTCTAACACGACGCTGT 69497 30 100.0 35 .............................. AGCGAATGGTACGACGGTGACGCGAAGCCGCTTCG 69432 30 100.0 36 .............................. GAATCGACGGGCGCTTCGGCGGTGGCGTTTCCGGGG 69366 30 100.0 32 .............................. ACAACCAAGAGCCAGAAGCCGACGAAGAGCAG 69304 30 100.0 35 .............................. CCCATGTCCAACGTGCGGAGCTACGAGTCGCTGGA 69239 30 100.0 37 .............................. TTGGAGGGTGTGCCACGCTGGAAGGTTACGGTCTGGG 69172 30 100.0 34 .............................. TCCCGTTGTCCGTGTCAACCTCCCGAGTAATCTC 69108 30 100.0 36 .............................. GAGAACGAAAACCGGGCGGTGATGACTGGCGTCGAC 69042 30 100.0 35 .............................. GTCGAAGAGGTCTTGCTGGTCGACCTCCGACTGGT 68977 30 100.0 35 .............................. TCGATTTGTGACCCGGCCTGTGGGAGCGGCCAGTT 68912 30 100.0 35 .............................. GCGTCGGCCAGCTCGCCGAGCGCGTCGATAGTCGT 68847 30 100.0 37 .............................. GACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAG 68780 30 100.0 36 .............................. GTCGACATTCGATGGTGAACCATCGGTCGGCGCCGG 68714 30 100.0 35 .............................. GCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCG 68649 30 100.0 35 .............................. GCGTCACCGACCGGGATTACATCACCAAGAACCCG 68584 30 100.0 36 .............................. GCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCA 68518 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 127 30 100.0 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : GTGGGGTCGGACTGGAACGCCCACCATCCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGTGACTGGATGACCGTCCAGTGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACTCGGCAAACAACGCCGATTATGACTATGACGTGTTTCAGACGTACCCTCGTGGGATTGAAGCGACTTTCTCGGGCGGATGGGGCTCGGGACCGGCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGCGTTTCAGACGTACCCTCGTGGGATTGAAGCGTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGCGTTTCAGACGTACTCTCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 87541-87835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMZ01000003.1 Halobacterium hubeiense strain JI20-8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 87541 29 100.0 36 ............................. CCGCGACTACTACAAGGAGGAAGTCCTGAAATTCGC 87606 29 100.0 39 ............................. CGTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 87674 29 100.0 38 ............................. CCAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 87741 29 100.0 37 ............................. CCCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 87807 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 100.0 38 GTTACATCAGAACGCTAGTGCGGTTGAAG # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : GTGCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 114845-114035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMZ01000003.1 Halobacterium hubeiense strain JI20-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 114844 30 100.0 35 .............................. TAAGTCGGGCGACACGGCGTCGACGCCTTCGGTAA 114779 30 100.0 37 .............................. ATCGACTGGTACGAGAACAACGCGTATCCCGACCGTG 114712 30 100.0 32 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTG 114650 30 100.0 36 .............................. GATGCATCGCCAGCAGACATTATCTCCGTCGGAGAC 114584 30 100.0 34 .............................. CCGCGCTCGGCCTGAATGCCGGAGATGCCGCGGG 114520 30 100.0 34 .............................. TACGACGACCTCGCAGTCTCCGACACCTATACCG 114456 30 100.0 34 .............................. CGTCTCGCCGTCGGTCAACAGTCCCGAGTGGCTG 114392 30 100.0 37 .............................. TCGAAGACGCATCCGGCGAGCGCGACCGCGACATGGA 114325 30 100.0 37 .............................. CGACGTCGCGCCGGCATCATGCCTCCGGCAGGTGCCA 114258 30 100.0 34 .............................. ACGAACAGCCCGGACACCGACGAACTCGCAGGCT 114194 30 100.0 35 .............................. CATCAGTCGCCGCCGTTGTCTGCGTCCTGCTCGAC 114129 30 100.0 35 .............................. CTCTCTTTGCCAGAAGCCACGCCGAAACTAATACA 114064 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 35 GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Left flank : CTACCACGGCCTCGACGCGAAGTTCGAGCGACAGCAGCCGAAGTCGATCCGAACCCGTTCGCCAGTTTGCGCTCGCCGACGCCGACGGCGTCTATCAGGGCTGCGGTGAGAAGGCGCCGTTCGAGACTCCAGCCGGTCGCCCATATCTGGAAGTCCATCACCTCTACCGGCTGAGTGATGGCGGTTTCGACGACCCTGAGAACGTCATCGCGCTATGTCCGAACTGCCACCGCCGCCGTCACGAGGCAAGAACGACGACGAGTTCAACCAGGAACTTATCGAGAAGGGCGAAGAGCGGAACCGCCGAATTCTGTCCGAGTGATTAGCCGTGGAACCCCATCGTACCGCCGCCTACACAGACTAGGGAAATCGGATTTCCAGCAACGCCGGTACTCGCCGTTCTTCATCGACCCCTAGGGGTTCAGGGAGTATTGCGGGTCGACGAAAACACCGAAGTGTGTATGGCTTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CGCAGTAAACCCGACCCCGAACACCCATGGCGGTACGTCTGCAAGGAGTGCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGAACGCCCACCCGCACGCCAGCAGGCTGTTACAGTAGAACGCTAGTGCGGTTGAAGCCCCGAGAGTTCCAGCGGCAGCACGAGCGAGCGCGTCGTTACAGTAGAACGCTAGTGGGTTGAAGGGAATGGGTGAACTACACAATCGCCACCGAGCACACGTTACAGCAGAACGCTAGTACGGTTGAAGGTCCAAGATCTCCGGTGGGTTCCGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 5 122411-120134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMZ01000003.1 Halobacterium hubeiense strain JI20-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 122410 30 100.0 34 .............................. CCCACGCTGCGTAATCTCAACGCCCTCCACGTCC 122346 30 100.0 36 .............................. TCCAACCCCTTATGATGATGGCAGTAATCGTGCTCG 122280 30 100.0 35 .............................. CTCACGAGCGAGCTCGGGTTCGAGGACATGCCCGA 122215 30 100.0 37 .............................. GCTTACTTGCGGGTTCATACTGCATTACACCCTTCGG 122148 30 100.0 37 .............................. ATCCGGATGCAGCTCGCCATCGAGGAAGCGCTGTTCG 122081 30 100.0 36 .............................. ACAGTCCGCCGCCCGAACCGCCGCTTGCCGAGCCCG 122015 30 100.0 35 .............................. ACCCGGAGAACAAATCAGCCAATCACTCCAAGTAG 121950 30 100.0 36 .............................. CTTGAATGTCGAAACTGATAGTGTAGCGTTGTAGGT 121884 30 100.0 35 .............................. CCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGA 121819 30 100.0 35 .............................. GAGAACTATACATCGACAGGGGGATGTCCTCGGCG 121754 30 100.0 37 .............................. ACGACGCAACCGTCGATTACGCGCCCGAGACCACCGA 121687 30 100.0 53 .............................. CTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTC 121604 30 96.7 37 .........................A.... GTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGG 121537 30 100.0 36 .............................. TGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGG 121471 30 100.0 36 .............................. CCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACA 121405 30 100.0 36 .............................. GGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGT 121339 30 100.0 33 .............................. ACCGAGGCGCACCACGGGACGGCGCGCATCCTG 121276 30 100.0 32 .............................. GGCGGTGAGGTACTGCACGTACGTCCAGCCGC 121214 30 100.0 36 .............................. CAGATCAAGGAGATGCACGCCGGTGTGCTCGTCACC 121148 30 100.0 35 .............................. AGAACCTCCAGCGCGAGGATGATACCCCCGCCAGC 121083 30 100.0 38 .............................. CCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACGGC 121015 30 93.3 36 .......T.....................T GGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 120949 30 96.7 35 .............................T GATTGGCTCGTCCAGGGTCGGCCGCTCGGAGGTGC 120884 30 100.0 37 .............................. ACGCAAGCACTCTCGCTGGTGTCTGTCATGGTGTCGC 120817 30 100.0 37 .............................. GTCGCCACGGCGCCGTCGCCGTCCGGGTCGGTGAAGC 120750 30 100.0 35 .............................. AACGAGGACCTCGTCGACTGGAGCGTCGAGAAGGA 120685 30 93.3 35 .......T.....................G GAAACGGGCGTAACGGAGCAGAACCTCGACAGCAG 120620 30 100.0 36 .............................. TCGACGACAACGACTAATACCGAGTCTAAAACACTG 120554 30 96.7 33 .......T...................... GGCACCTGGCTCGCCATGGAGTGGACGGGCCGC 120491 30 93.3 35 .......T..................G... CTGAACACCAAGCAGGACCCCGTCGGTGACGTCCT 120426 30 96.7 37 .......T...................... TCCCGCCGCAGGCGTTTACGAGCGCTATCACCTCCGA 120359 30 96.7 35 .......T...................... TGCCCGTACGGCGTGAGCTCTGCTGTCCCAGATGC 120294 30 93.3 35 .......T....T................. AGCACCCACTCCGGCGTCTCCCCGCCGTCGACGGT 120229 30 93.3 36 .......T.................A.... GGGGCGTATCTATCGTGACTGACCCATAGCCCGCAC 120163 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================== ================== 35 30 98.6 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGCGGTACTCGCCGGACTACGCGAGTTCTGCGACAGCATGAGACGCTATGTGTCTTCGTATTCTTCGAGTGTGACTTGGGAGGCGTCGAGGCCGGCTTTCCGGGGGTCTTGCGAGGAGAACTTCCTCGCTAGCGAAATCCGGGCTTCGTAGCTGAGGACTGCAATTGTGGGGATGGAGAACGCGAGAAGTGGGGTGATCTGTGTTTGGAGAATTAACTCGCCAGCAGCGTATGCGAAGAATGAGTCTGCGACAGACAGCCGCCTGTCAGGCGCGGCACCGACACGAGCGCAAACGAACTCTCCGCAAGACGTACGAGTGATTAGCCACGGAACAGCCTCGTCCCGCTGGCCACACTGACTCGGGAGATCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGGTTCAGGGACTATTGCGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : GACGCGTCCCGTTGGAACGTCGCCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAATCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCATGGGAAGCCGAGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGAAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGTGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACCGCATCAGGCTTGTCGGGTCCCTCGTCGCTGACTTCGAAGACGTGGTGGACTTCCAGGTACGGGTCGCCGGTGCGGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //