Array 1 44583-44196 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAW01000006.1 Faecalibacterium prausnitzii strain AF10-13 AF10-13.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 44582 27 100.0 33 ........................... TGATTCATGATAGATTACCTCTCTTCTTTCTGA 44522 27 100.0 34 ........................... TTACGGAATGGATGTGGTTTCACATTTCATGGCG 44461 27 96.3 33 ............C.............. CTTGTCGTGTCGTTGCCTTGTGAAATATGGTCT 44401 27 88.9 33 ...................A...T.A. CCGCTCAGGTCGGCACCGCTCAGGTTGGAACTG 44341 27 88.9 33 A...C....................A. ATTTCGATGCCGTCACCAGTGTAAATCAATCGC 44281 27 100.0 33 ........................... TAGTATTCGTAAATGCCATGAAAATTGATTGCA 44221 26 92.6 0 .....................-...C. | ========== ====== ====== ====== =========================== ================================== ================== 7 27 95.2 33 GTACAATCCCCGTAAGGGGGCGAAAGC # Left flank : CGTCCACCAGATCCCGGCACAGGCCGATCAGCGTTTCCGGGCGCTGATCCTCGGGCAGGTGGAGCTGGTGCACCTGATCTTCTGCAATGCCCAGCTGTGCCAGCTCTTCCAGCAGGCGCTGATAGTTGCGGGCGGTATCGGCATTTTCCTGCCGGATGGCCAGCAGCTGCACCGTGTCCCCGGGTTCAAGGGTATCCCGCATTACCTGCACGATGGGAAAGCAGGTGGCCGTGGGCGCACCTGCCCGCTCCCGCTGGTACAGCATGGGGTCCAGCTTTCCCTGCAAAGGTACGGTGGTGATATAAGTCTTTAGCACAGGGCAACACTCCTTTTTATAAGATTCATTATCTGCATCATACCATGAAACCGCCCCGCGCACAAGGCAGGCTGAATGAATTTATGACCGTTCCTTTCAGCGCAAAAGCACATCATTGCAATAAAGTGAATATTTTCCAGCCATCCGGCTCTTCAGTTTTGCGGTGTTTTGTGATATATTTAGG # Right flank : AAGGCAAGGAAAGTAATTTCAAGTTTCTTACTTAACTATCCACATTCCATGGGCTTTTTCTCTTTGCAATGTCAAGGAGGAATGCCCTATGCTCATCAACTTTACCAATCATCCTTCTGCCCTGTGGAGCGCCGAGCAAAAGGCTGCGGCGCAGGTCTACGGCAAGGTGATAGACCTTGCCTTCCCTGCCATCGACCCCGCCACCAACGAGGCCGTGCTGGACTCCCTTGCCGCGGTATATGCCGACCACATCCTGCACCTTAACCCGGACGCCGTGCTCTGTCAGGGCGAGTGCACCTTTGTGTACCGGGTAGTCCAGCGTCTGGAAGCCGCGGGCATCCCCACGCTGGCCGCCTGCTCCCGCCGCAAGAGCCAGGAGACCACCTACCCGGACGGCAGCACCCTGAAGCGCAGCATCTTCGCCTTTGCCGGCTTCCGCCGCTATGGCACGCCCTGAAAAGGGATTTCAATTGTTCCACCACCGTGGTATAATGGAGCCG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACAATCCCCGTAAGGGGGCGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 48461-47904 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAW01000006.1 Faecalibacterium prausnitzii strain AF10-13 AF10-13.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================= ================== 48460 23 91.3 44 .............A........T CGGAACGTGTCAATGGCTTTCGCCGCATCGCACCGGTTGCAATA T [48454] 48392 23 87.0 42 ........C......G..A.... AGATCTACCTTTAAGGTGATAATCTGTTCCATGCATTGCATT 48327 23 95.7 42 ........C.............. ATGCGGTAATCCGCCCAAGCCTCCTGGTAACCGATTGCAATT 48262 23 100.0 45 ....................... CTGTGAGGACAATCCAGCTTTTCGCAATACTTGCAGATTGCAATT 48194 23 78.3 45 ........CG.....G..A.G.. GCATTTCCGTTATTGTTCACGTTTGCGAAATTGGCAATTTCAGTT 48126 23 87.0 45 .C......CG............. AGCATTACCATTGCGGCAATGTCAGAATACACGGCGATTGCAATT 48058 23 100.0 43 ....................... TTACCACACACGGGGCAAACGCTCAAACGGCAACATTGCAATT 47992 23 91.3 43 ..................A..G. ATGATGTCGCACTCGTCTGCGTAACTCTCGATTTATTGCAATT 47926 23 87.0 0 .................AA...A | ========== ====== ====== ====== ======================= ============================================= ================== 9 23 90.8 44 TATCCCCGTAAGGGGACGGAAAC # Left flank : CCGTTCATCAGCGAGTTTTTTCACTGGCTGGAGCAGAGCTTTGCTGTTCTGCACAGCGGCGAGACCTGCCGCTATCTGCCGGTGAACGATTCCGCACAGAGCAGCGAGCGTCTGACCCCGGCTCTGGGCGTGCTGGAGGAGCTGGACCTGCTCCACTTTGCCCTGCTGGGCGGCTCCAACAGCCGCCTGTACCTCTATATCAACCAGACCCAGACCCTGGAACTGGCTGACCGCGGCTTTTACCGCAACCACCTGCTGGAGCGCATTGCCCAGCGCCACACCGATGCTGTGCGGCTGATGAGCTGGCTGTTCACAAGCGGCTTTTCCAGCGAGCAGCTCTGGGACCGCATCGAGGAATACTTCCTCGGCTTGCCCATTCAGGGCTTTGACGCCCCTTCTGCCGAATCGAGGTGATCTTTATGGCTTATCTTTTCTACTCCATTCGCGCTTCTCCGGTGTATAGTTCTTTTCTTTTGGCTCAATGTGTGGTATAGTAAAAC # Right flank : GCACCTCTGCCACTGGCGTTTGCCAGCAGCGGAGGTGCTTTGCTTTTTCTTATATTCTATTTTACAGGTTGGGAACTGCGCCTGCCGGAATCGTCTTTGTGACAGGCAGCGCCTTGACGCCTTCCGGAACATCCGGCTTCATGGGGCGGATCTCCTGCAGATAATCGGCCACATCCTGCAAGGTCTGCTCAATATTGGCTGTGTCCAACGGAAGAATACGGTCGCTTTGCAGACCAAAAGCCGTATCACTGGCATGGTTGATCTGGTTGCGGTACTGCATCACGCGCTGGTAGAACAGTGCCGCATCCTCGATCTGCCACCGGACATCCGGGTCGATCACCAGCTGACCGGAAGCGAGGATCGTATCCATATAGGCGTGCATTTCTTTCGAATTTGCCACGCCAAACAACATATTGCCATCTGCATCGTCCTTGCTGTGGGTCAGGCGCAGATCCGTTGTATAGGGATACTCCTTTTGCATCAAAGTCAGGCGGCAGAAA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //