Array 1 545205-544183 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 545204 30 96.7 36 .G............................ GGTCCCAAGCAAGTGGTAGATATTTTGTTGGATCTC 545138 30 100.0 36 .............................. GTTTCCGTTCATTTTTATCCATGTCGCCCGCCGGTT 545072 30 100.0 37 .............................. GCAAACAGGAAGGTGGTTACACAGGGCCTGGTCCTGT 545005 30 100.0 35 .............................. CGAAGGTTCTACCAGACCCTGCTTTTTGAGGTCGC 544940 30 100.0 35 .............................. CGAAAACTCTGATGATGAGGAATACTTCAAAAATG 544875 30 100.0 35 .............................. ATAGTGATGACGGTCGACGACGACTTCGCTGTTGT 544810 30 100.0 36 .............................. AGAGTGGAGAGGACAACTAAAGGGCACAATAAATTG 544744 30 100.0 38 .............................. AGCGAAACGCAATACATTTATGTAACATTCACAGAAAC 544676 30 100.0 36 .............................. ATTTCCCGATATTCATTTTGTTGTCCGAATTTACCA 544610 30 96.7 37 ....................C......... GCGATTTCTTTAGCGGATATAGATTTATCTCTACTTC 544543 30 96.7 35 ....................C......... TGATTGTCTTCATCTGTAGCACCCTCCCCCAGTTT 544478 30 96.7 35 ....................C......... AAACTCAAGGAACTTGAGGGAGAAAAGGAAGTGCT 544413 30 96.7 36 ....................C......... AATCATACATCGGATATCCTGACACGGCAAAATATA 544347 30 96.7 36 ....................C......... CATTTTTCCATTATTCGAGCTCTTTTTCAATATCGG 544281 30 96.7 39 ....................C......... ATGAAAACAAGTTGGACTGGTCATACATCATATAAGAAA 544212 30 96.7 0 ....................C......... | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.4 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CTTCGGCATGTGAAGGGCCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAACCACTTCTTCTCCGTTTTCATGCAGTATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAAGCGCTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCCGTATCGACCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 557367-559006 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 557367 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 557434 30 100.0 36 .............................. TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG 557500 30 100.0 39 .............................. GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA 557569 30 100.0 38 .............................. GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT 557637 30 100.0 38 .............................. TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA 557705 30 100.0 38 .............................. AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA 557773 30 100.0 35 .............................. CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT 557838 30 100.0 38 .............................. CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC 557906 30 100.0 36 .............................. ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA 557972 30 100.0 36 .............................. TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG 558038 30 100.0 37 .............................. TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC 558105 30 100.0 36 .............................. CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT 558171 30 100.0 38 .............................. GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA 558239 30 100.0 40 .............................. GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG 558309 30 100.0 39 .............................. AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA 558378 30 100.0 36 .............................. CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT 558444 30 100.0 37 .............................. GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT 558511 30 100.0 35 .............................. CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG 558576 30 100.0 39 .............................. GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG 558645 30 100.0 36 .............................. AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG 558711 30 100.0 35 .............................. GTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558776 30 100.0 35 .............................. GTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558841 30 100.0 38 .............................. GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG 558909 30 100.0 38 .............................. TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT 558977 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.7 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAACGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACCTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGAAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACGCATCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTATATCTATCTTCCAGTGCCAGATACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 590887-591315 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 590887 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 590952 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 591018 30 100.0 37 .............................. GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 591085 30 100.0 38 .............................. GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 591153 30 100.0 37 .............................. TCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA 591220 30 100.0 36 .............................. GGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT 591286 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCATCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 4 974477-976309 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 974477 30 83.3 37 T...T.G...A.T................. AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 974544 30 96.7 37 ....................T......... TGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA 974611 30 96.7 38 ....................C......... GAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT 974679 30 100.0 38 .............................. GCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT 974747 30 100.0 35 .............................. ACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG 974812 30 100.0 35 .............................. TTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT 974877 30 100.0 37 .............................. CAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG 974944 30 100.0 37 .............................. TCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT 975011 30 100.0 37 .............................. ATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA 975078 30 100.0 38 .............................. CTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT 975146 30 100.0 35 .............................. CCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT 975211 30 100.0 37 .............................. TTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT 975278 30 100.0 36 .............................. GTTGCGAGTAGATGATGATTTTTACGACGATACTAT 975344 30 100.0 36 .............................. CAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG 975410 30 100.0 37 .............................. GCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA 975477 30 100.0 36 .............................. ACGTAGATTTAACTTGACATAGGAATTGTCAAATGG 975543 30 96.7 40 ....................T......... ATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT 975613 30 96.7 39 ....................T......... CAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT 975682 30 96.7 37 ....................T......... AGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC 975749 30 96.7 39 ....................T......... TGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA 975818 30 96.7 35 ....................T......... CTATAGGCATACTATAGTTTGCTATAGGCATACTA 975883 30 96.7 35 ....................T......... CTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG 975948 30 96.7 35 ....................T......... CAGAATCAACTCGAAGACCTTCAGCAAACAACAGC 976013 30 96.7 37 ....................T......... AGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC 976080 30 96.7 37 ....................T......... TCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA 976147 30 96.7 38 ....................T......... GTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC 976215 30 96.7 35 ....................T......... CATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG 976280 30 96.7 0 ....................T......... | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 97.8 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TGGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGGTTCGTAGAGTTCGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 5 1064106-1062015 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1064105 30 96.7 35 .C............................ GATTTCGTACCGACGGATTATCAGCACGATTATTT 1064040 30 96.7 35 ....................T......... GCTGTGAAAGATCTCTGGAAGTATCCGGTTTGGAT 1063975 30 100.0 35 .............................. AATTGAAGAAAAACCCTTCGCAACAAGCTTTGTAG 1063910 30 100.0 38 .............................. TATCTACCTCACCGCGCACACACATCAGCCGAGTGTAG 1063842 30 100.0 35 .............................. GATGGGAAAATAGTTGTTACCTTTGAGTCAGACCG 1063777 30 100.0 41 .............................. ACGTGCCTCGCCCGCTTTTGGCTTATTCAAGGGCATTCCTG 1063706 30 100.0 36 .............................. TAGTTGTAGCCTGCAATGTAGCCGGCAAGTCTGATG 1063640 30 100.0 36 .............................. CGATATCGCTGACGAGTATTTCAGGAGTTTAGCGGA 1063574 30 100.0 36 .............................. GCGGGAAGATAATCACAACTGAAAAAGGCAACTACG 1063508 30 100.0 36 .............................. TATTTGCCACCGGTGTGAAGCTTTTCTCATCAATAA 1063442 30 100.0 37 .............................. TGTTCTTCTTCACACATAAAATGGTTTTTTGGTTTCA 1063375 30 100.0 37 .............................. TGTTCTTCTTCACACATAAAATGGTTTTTTGGTTTCA 1063308 30 100.0 37 .............................. TGTTCTTCTTCACACATAAAATGGTTTTTTGGTTTCA 1063241 30 100.0 37 .............................. TGTTCTTCTTCACACATAAAATGGTTTTTTGGTTTCA 1063174 30 100.0 38 .............................. GGTATTCAAATGGGGTGGTGGGGCAGTCAATTAGCGGA 1063106 30 100.0 37 .............................. GATATGCGACGACACTGGGAACGACTGCCAGCCCTGA 1063039 30 100.0 37 .............................. ACTGAATGCCTATAGGGTTTGCCGCCGAACTCAAGCG 1062972 30 100.0 36 .............................. ACTTGACATGGGCTGGGCAAAATGGTACGATTGAAG 1062906 30 96.7 36 ....................T......... TGTCTTCATGGGTGCATGGTATCTCAAGAAAGCCTA 1062840 30 96.7 36 ....................T......... ATTCTTCTTTGAATTCTTCAGGATTATCCTCGAAAT 1062774 30 96.7 36 ....................T......... TGAACGCAGAAAACGATGTTGCAACAAGGTTCAATT 1062708 30 96.7 36 ....................T......... TTGCTACATTATTTGATGCTGTGACTGTGAAATCTA 1062642 30 96.7 36 ....................T......... ATTCGTTTCATTCGTTTACTGCGATCGCATCACATG 1062576 30 96.7 37 ....................T......... TTGAAAGTACATAGAACAGTGTATGCAACACGTACGA 1062509 30 96.7 36 ....................T......... CAAGGAAATATTCGCCCTCTCCTACGCATACGGCTT 1062443 30 96.7 35 ....................T......... AGGTTGCATGATGTAGGATGGGACTCTTACCGGCA 1062378 30 96.7 35 ....................T......... ACAAAGAGTTGAGGAAAAGTTTGTACATCAAACGG 1062313 30 96.7 40 ....................T......... GCAAGTTTCGACGGCAAGAAAGCGGTCAAGGTGCTATCCT 1062243 30 96.7 36 ....................T......... CTGTAGTCGACAACATATTTAGACAACAGGGCGCGG 1062177 30 96.7 37 ....................T......... TCTATTGGAACGACGTGCTCGCAGACTGCTACGAAAT 1062110 30 96.7 36 ....................T......... AACCTAAGCCGTCTATAGTATGCCTATAGTAAGCCA 1062044 30 96.7 0 ....................T......... | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 98.3 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : ATTTCTTAGCTTTTCAATAATCTTTTCTTTATTTCTCTCAAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTCGAAACACTAGATTCGTCGAGGAATTTCATGGTGGGGGAAACAGAAGAAGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAAACCTTCGAACTCTTTCCACCAGGGCTTTTCTTAACGGGACCAATATCTTTGAAAATCAAACCATTTGGACCACTTTCGAGAAAAATAGCCAGTCCGTCTTCAAGAGGAAGTTCTTCGGCGAAATCTGAGAGAGATTCGATTCCGATTTTCCCAAGATTGTATATCTTCTCCAGCACCCCTATCCCCCCTGCTGTGTCATCATCTACATTTTAACGTACACTTTCTGACACCAATTTAAACCTATAGACATTGCACCTGAAAGGAAAAATTGAAACAGTAAGGAATTATTGAAACCGGA # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGAGGTGTTTTTGGTGAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 6 1224331-1223301 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1224330 30 73.3 37 TG...TT.......G.A..C.C........ TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC G [1224323] 1224262 30 96.7 36 ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1224196 30 100.0 36 .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1224130 30 100.0 36 .............................. GGATGGATCCTGAAATCAAAGAGTTATGGAGGGAGA 1224064 30 100.0 37 .............................. TGGATTGGCGACGTATAAACGAAAGCAAGAAAAAAGT 1223997 30 100.0 37 .............................. GCGTATATTTCAGCTTTCCCAAGTTTCCCATCGAACT 1223930 30 100.0 35 .............................. GGATACTGAAGGTCGGGAGGTGGAATGATGAAAAG 1223865 30 100.0 38 .............................. GGGGAATAACCGTCACGCTTGCTTCGGGCTTCCTGACT 1223797 30 100.0 36 .............................. GGTCTTTGATGCTGTCGAGGATGCGAACGAATTCCT 1223731 30 100.0 39 .............................. CAATCTCTGCGTGGGTGTACATAGATGCAGATCAGGGCC 1223662 30 100.0 36 .............................. GCGATTCCTCCGTTATAAGCTCAACATGATCGGCGT 1223596 30 100.0 35 .............................. GAGCTCTGCGACGTCATACGCTTCGCCGAAGAGCT 1223531 30 100.0 37 .............................. GCGTGAACGCATACGAGCTTCTTGTCGAGATAGCAGA 1223464 30 100.0 37 .............................. AAACCAACGGTGTTTGCCTGATATGCAAGATATCCAT 1223397 30 100.0 37 .............................. ATCCTCTTCGCAGTTGCGGGCTTTATCTTTGTACTCA 1223330 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.1 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAAACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAAGAAACTGGTACCGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAACATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCATCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGAATTTT # Right flank : CCGTTGAGTTCAAAAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTGGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCGTTGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGAATCAACCTTCCAATGCCCGGTACACACAATACCTACTTTGTGAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 7 1335694-1336249 **** Predicted by CRISPRDetect 2.4 *** >NC_010483.1 Thermotoga sp. RQ2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1335694 30 100.0 36 .............................. AGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT 1335760 30 96.7 35 ....................C......... CCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT 1335825 30 96.7 37 ....................G......... ACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG 1335892 30 100.0 34 .............................. TCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA 1335956 30 100.0 36 .............................. TTTGCTAATCCACGACGGCACAGACAACGAATTCTT 1336022 30 100.0 36 .............................. ATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA 1336088 30 96.7 36 ....................G......... ACGCCTTATCGTTAAACGAAATGACACGATAGTAGT 1336154 30 96.7 36 ....................G......... TTTTGAGATTACACTCGAAGACATAGATATAGTTGT 1336220 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.2 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CCAAAGGAAAGACACCGGAGGAAATTTACTCAACAATTGTGAAAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAACTTCAAGGGTTACATCAGCCTGCCGGATCGCTATCTCTCCAAAAGAGAAATAAAGAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAACTTCCACCAACGATCTATGGATTCGAAGAACTCCGATGTAAAAATGAAAACTGCATCACCAATCCCGCACACGGCGAAAACGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTTATTTTATAGCCAAGCTTATCTGGACTCGGTCAGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATATTTTTTGAAATTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTTAACAACGAAAGAACACAAGCCAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGAGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATGGATGAAAGAAGGTCTTACTCAAAGAGTTAGAGACTAAGTCACAGTACTCTCTATTCATCCAATCTTCACGTCACCATTTTCCATGAATTCTCTTCATATTGTTTCATCATATCATCTGTTATTCTCTTTTTAACGCATAACTTCCGGTACCAGAAAGGCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGTATCGTCCTTCCGATGCCAGGTACACGTATCACCCACTTTATGA # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //