Array 1 6872-7814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKOB010000033.1 Klebsiella pneumoniae strain 2020EL-00053 NODE_33_length_39781_cov_27.681369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6872 29 93.1 32 ............TG............... CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 6933 29 93.1 32 ............TG............... CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 6994 29 93.1 32 ............AG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 7055 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 7116 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7177 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 7238 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 7299 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 7360 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT C [7371] 7422 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7483 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 7544 28 89.7 32 ..........-.TC............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 7604 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 7665 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 7726 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 7787 28 89.7 0 T.....................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTGGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGCTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201512-204161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKOB010000003.1 Klebsiella pneumoniae strain 2020EL-00053 NODE_3_length_384704_cov_36.219004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201512 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 201573 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 201634 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 201695 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 201757 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 201818 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 201879 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 201940 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 202001 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 202062 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 202123 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 202184 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 202245 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 202306 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 202367 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 202428 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 202489 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 202550 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 202611 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 202672 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 202733 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 202794 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 202855 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 202916 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 202977 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 203038 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 203099 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 203160 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 203221 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 203282 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 203343 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 203404 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 203465 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 203526 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 203587 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 203648 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 203709 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 203770 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 203831 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 203892 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 203953 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 204014 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 204075 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 204133 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //