Array 1 486608-487062 **** Predicted by CRISPRDetect 2.4 *** >NZ_ULDY01000001.1 Klebsiella pneumoniae strain EuSCAPE_ES212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 486608 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 486669 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 486730 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 486791 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 486852 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 486913 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 486974 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 487035 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495815-496760 **** Predicted by CRISPRDetect 2.4 *** >NZ_ULDY01000001.1 Klebsiella pneumoniae strain EuSCAPE_ES212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 495815 28 100.0 33 ............................ CTCGGCGCGCACGATCACGTAGTGAACGGTCAG 495876 28 100.0 33 ............................ TCCTATTTACACAGTACCTGGCGCGCCAGGCGA 495937 28 100.0 33 ............................ TGTCGATAAAGTCGAGCTCGACGTCGACGCGCT 495998 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 496059 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 496120 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 496181 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 496242 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 496303 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 496364 28 100.0 33 ............................ TTCTGAATAAATCAGCGCGTCATAGCCGTTATC 496425 28 100.0 33 ............................ TCATACTCATTGGTGCAACACGGTATCCACGTA 496486 28 100.0 33 ............................ CTCACCAGCTCTGCGGCCTTCTTGCGATACCGC 496547 28 100.0 33 ............................ TAAATGAGGCTAACTGGACGCAGCGAGAGAACG 496608 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 496669 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 496733 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 16 28 97.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCTAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //