Array 1 123049-124162 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUV01000003.1 Thermococcus sp. 9N3 NODE_3_length_183354_cov_36.445775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 123049 30 100.0 37 .............................. ATTTCAGAAGTATCTCGTCTAAGAGTTTCTCTTCAAC 123116 30 100.0 37 .............................. GGAATTGGTAAAGCTCAAGGAGGAAAATCGGAGGCTC 123183 30 100.0 36 .............................. GCGGTCTTTGGGCTCTTGACAGAGAAGGCGATGGAG 123249 30 100.0 38 .............................. TGATAGCGAATTCACGAAAATAGTTCTGCTGATGGTCG 123317 30 100.0 36 .............................. AAGATTACCGGGTTCACGTTAAAGCCGTCTTCGCGG 123383 30 100.0 37 .............................. ACACTTAAATTTTATCATTAAAACTCACAACAATTAA 123450 30 100.0 37 .............................. GGGCCTCAGCCACCTCGGCGGGAATGTTGAGGCGGGG 123517 30 100.0 37 .............................. TTTCTCTGACGAAGTCCACCGCTTGAGCTTCTACGTG 123584 30 100.0 43 .............................. AAAAAGAAGGTCGACGAATCGCTCGAAAAGGTCAGGCTGGAAG 123657 30 100.0 45 .............................. AAGAATCCGCCAATCGCGTTGATAATTCTGTCAATGAGGCCCGCA 123732 30 100.0 39 .............................. TCTCAACGACCCGGTGAACCCAGCCGGCGCAAACGTCGT 123801 30 100.0 36 .............................. CAGCAGGAGGAGCAGAAACGACGCTTTAAGATTGGT 123867 30 100.0 39 .............................. AGTGCTACGGCGTCAAAAAAGCGTTGGAAACAAGTCCGC 123936 30 100.0 34 .............................. AAAACCACCTTACCGCCCCTGACGGGGCAACCTC 124000 30 100.0 37 .............................. AAACGGGAATGAGACGATAATAAACGCATGCGCTGGG 124067 30 100.0 36 .............................. TAATCAGCATGTAAAGGGTAACGTGGTTGCCGACCA 124133 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ============================================= ================== 17 30 99.8 38 GTTGCAATAAGACTCGAGGAGAATTGAAAC # Left flank : CTCCAAGGACGAAGGACGGCGTGCCGATTGAGTGACACCTCGACGAGTGCTGTTTTCCGCAATTTTTCGGCTCGCGTTGGCCTTCCCTTTGAGAATGCTCTTACAGGCCCGCTCCGGAAATCGATTTTTGTGGTTATGTAGACGTAACTTATTGGAATGATTTTGTTGGTCTGTGTAACGAGATATTTTCGGACAGTTTTAATGATGCCTTCCCAACGCCTAAACGACCGTAAAACCTATTTAAATCAAATTGTTTTTGGGAGAAACGCAGGATAGCCGTTGGACGACCCAACAGAGGTCAGTAACACCTCGGGAAATCGCGGTAAGCTATTCCCTCGACTGGGGGAAGCGCTAATCAGGTTGCTTGCACTTGTGGGAGTGCCCATCAAGCGGTTTGGACAAGCCACAAAGGGCCCGGGTTAAAGTCCGATTTCCAGAAAGGCTTAAATATCGGAAGGTCCGTCTTTCTCTGTTAGGCGAAAGGGCGAGTTTCGCGCCCT # Right flank : ATCTAACTTCTTGATTTTTCCCCACCTATTGTCCGTTACATTCTACGGTAGAAGAATTTATAAAGGGGTCTCTTTACTGGATGCTGGTGGGACCGATGCTCAAGGTGCAGGTTCGCAAGCAAATCAAGAGGCAGAGGAAGAGTGGCAAAGTCTATAACGTCGAGCAGAGGCTTATTTACGTTCCCTCAAAGGCCGAGCTTCCCGATGAGGTTTACATTTTGACTCCAGAAGAACTCAGAGAGCTCGTCGAGCTGATTCCCGAGGAGAAGAGGCCGAGCTGGCTGGTGGCGGAATGAAGACGCTTGTAATCTCTGTAGACAGAAGCAGGCAGAAAAGAACCATCTACGCGTTAGTTGAGGTAGATTACAACAATCTCAGACATATACGAGAGAAAGGCAGCTGGCTTAAGCACTTGGCGGAGCTTCCGAAGCAGGAGCGAAGGAACTACATTGCAAAATTCCCAGGCAGATTCGAAAAACTAAAACCCTATCTGGAGAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 338986-340091 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUV01000001.1 Thermococcus sp. 9N3 NODE_1_length_1229293_cov_36.069676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 338986 30 100.0 37 .............................. AAGTAGTTCACGTTTCTGTTTATTGCCCTCGCGTAGG 339053 30 100.0 37 .............................. CTCTTTTTTACAAATAAATTTAAGGAGGGTCTAAAAC 339120 30 100.0 37 .............................. ATTATCTCCTCTTCCTTCTTCTTCTTGAGCCGGCGGT 339187 30 100.0 35 .............................. TATCCTGCCGAAAACCTTTCCAAGTGGGCACACAA 339252 30 100.0 38 .............................. TTCTTTATCGCTCCGTACGTTACGAGATACACAGATGA 339320 30 100.0 37 .............................. TGTGTTGCCTCGCCCAACCAAGGCGCTTCTTGAGAAC 339387 30 100.0 37 .............................. CTCTTTTTTACAAATAAATTTAAGGAGGGTCTAAAAC 339454 30 100.0 41 .............................. TCGTTGGGAAATAGAGCCCGTAGTATTGCTTTGTGTTGTAC 339525 30 100.0 36 .............................. TGAGCTCGCAGAAGTCGAGAAGGAGCTCGAACAGGT 339591 30 100.0 38 .............................. CATCAGCACTAGCGCGAAGGGCTTCAAGACCTTCTTTG 339659 30 100.0 38 .............................. CACGGTCAAGATGCTCAACTCTGATACGATGGAGGAGC 339727 30 100.0 38 .............................. GCTTCTTCTTGAAAAGCTGAGAAAATACGCGCGAGTAC 339795 30 100.0 37 .............................. TCTGTTCTCACCACGTGCCCTGTTTCCCGAGTCCAAA 339862 30 100.0 36 .............................. TGGTGTCGAAGGGGATTGTCGTGCCTCTGATGCCTA 339928 30 100.0 37 .............................. TAAGCTCGTCTCGGTTGATGACCGGAGCTGGGTCGAG 339995 30 96.7 37 .................A............ CACAACAGCTCATGGAGCCTTTTCGCTATCCAAATGA 340062 30 86.7 0 ..............TA..........G.C. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 99.0 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TAATATGGAAGCTCAGGGAGCTTGGCTTTGATGTGTTATCACGCTGAAGTGCGTGGGTTTTTGAAGTGTAGGCATGTCTTGCTCCCATTTCAGTTTTAATCTGTCCTGTGGAGTTTGGGAATTGATTTTTGCTTTTTCATTGGTGTTGCCTCTTGTAATACTTTATGCCATTTAATGTAACGAATTTTCTTCGAAATGCTGAACAAAGCCCGGGGAGCCTATGGATTTAACCAAAACCTGGCGAAATCATGCCTTTCTGAGTTTAACCTTCTTAGTGGGGTTTGTCTTAAATTTGTTGGCTTATCCTGGCTCTGAAAACTAATTATCCCCGATGGAGGAGAAGTTTTTGAGTGCCCGTTGAACCTCTACACGCTCCTATTTTCCTTCGGGAGTCTTAATTCACGGGCCCAGGTGGCTCTTTTTTGGGAAATCCCCAGAAAGTCTTAAATATCCGGTAATCCTTCTTTCTTCGTTGGGCAAAAGGACGAGTTTCGCGCCCT # Right flank : GCCACCTGGGAAACCCTTATCAGAGGTGGGGGTTTTCTTATCCCGGTGGTTTGAATGAAGGCCAGGGTAGTTGAACGCTTCAGGTTTGAATCCGCTCACGCGGTTCTCATCAACGGAAAACCGGAGGAGATTCACGGGCACACTTTCCGGCTTGAGATTGCCGTTGAGGGGCCCCTTAGAAACGGTTACGTGATTGACTTTCTCAAGCTGAGGCGCATCGTGGAGGAAATCATTGGAAAGCTCGACCATAGAAACCTCAACTCCCTCTTTGAGAACCCGACAACAGAGAACATCGCTCTCTGGATTGCGGAGCAGGTTAATGCGAAGCTCCCGGAGGGCGTTTCCCTAAAGCGGTTGACACTCTGGGAGGGCGACGAGAACGGGGTCGAGCTGGAGTTTTGAGAAAATGTTTTTATCTTGTAGTCTTGATAAGGTGAAATGGTGAATAAAATGTCTGAGGTTGCCTCTGAGAAGATGTTACGGCTGTATTCTCATCTTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 365041-366004 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUV01000001.1 Thermococcus sp. 9N3 NODE_1_length_1229293_cov_36.069676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 365041 30 100.0 37 .............................. ATTTATCCTAGCCACGCCCCGTCACCTCCCCTCGAGC 365108 30 100.0 35 .............................. ACGAAGAGCTCGCCGAGCTCTTCCTCGAGTTGGAG 365173 30 100.0 36 .............................. ATTCGTTGACTTGTCGAGCAAATCGCCAACGCCGAG 365239 30 100.0 37 .............................. GGAATATAAGCGCCTGGTCGAGCTCCTCAAGATTGCT 365306 30 100.0 37 .............................. ATTCCCTGCAAATGCTGCATAGATGACAGCGTTCGTG 365373 30 100.0 38 .............................. TACTTTTCAGTTATTCCAAGCTGTTCCAGTTCACGCGC 365441 30 100.0 38 .............................. GAGAACACCATAAGAACGACCTTTCCCAGGCCCCAGAG 365509 30 100.0 36 .............................. CAGGTCGGCTAACTCCTCGTCAATCTCTGCGAGCTC 365575 30 100.0 36 .............................. TGAGGATAATGACGAAAAGAAGCACTATTTTCGTGA 365641 30 100.0 37 .............................. TTTATCAGCGTTTGATGGAGTTCTGGTGAGCGGAAGC 365708 30 100.0 37 .............................. CCGGGGAGACGACAATCTCAAGATACTCAAGCCTCTC 365775 30 100.0 36 .............................. GAAGGTTAAGCGTAATAGAGAGCTATTCGCGAAGGC 365841 30 100.0 37 .............................. TTAATATTGCCTGATTCACAATTTGTAAGGCACATGT 365908 30 96.7 36 .................A............ TGGTCAACGTGGACCTTTGCGCGTCCTTTCTGTAGA 365974 30 76.7 0 .............C.A..A..GCC.A.... | A [365989] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.2 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TCTTCATTGGATTTCCCTTAACGGAGCAAAAACAACCTTTTATTTAAGGTTTTTGGCGGGGATTTTGACGGGCGCGTGTTTAAAGCCCGAGATGACGCGTGGCAAGCAACTTCTGGTATCTGCACGCATAGGTTCTTCCCCCGGCGGAATTCCGGTTTATCGAGACGGATTTCTCCCGGTTCTTGCTTGGCAAGGGATTTGAAATCGAAAATAGGGTTAACAGTTTTGTAACGATTCGTGACAGCAAACTATGGATAACATGACGAGATTTTTTGAGGGGATTAAATAACTCTCCGAGAGAGCCCTGTTGGATTGAAAGCGTGCTCAAAACCGATTAATTTTTAAAAACATCTTGTGGCAGGTTTTAAACCCTTTTTAACGGGCTTTGGAGCCTCTGGAAACGGCCAGCACATCAGGGCATTAGTACAGTTTTCCAGAAAGGCTTAAATATTCCGGCGTTCTCTTCTCTTCGTTGGGTGGAAGGACGAGTTTTGCTCCCC # Right flank : GAAGATTAAAAAGCTCAGAAGAGCCACTGGTTCTCGATACACTCGTCGCACGGCGGCTTCTCGCCGGCTATCGCCTTGAACTTCTTGTATATACACTCAGGCAGGCCGAGCGGACAGCGGTCCGGGTACTGGCCGGGCCTGACCTTCGTCGGGTCGAGCTTTATCTTGATGTAAGCCTCGTACTCCTCGACCTTCTTCCAGGGCAGGACCTTCGCCCCGTAAATCACGAGTCCGTCGTAAATCTTCGCGTAGTCACCGATGACGGCATTCTCCTTGATGATTACGTCCCTGCCGACGACGACGCCCTCGCCGAGTATCGTGTCCTTCAGCTCGGCGCGCTCCTTGATTATGTCGCTCCCGATGAGGACCGAGCGCTTGATGTAAGCTTTGTCCTCTATCACAGTGTTCGGGCCGATGTAGGAGTAGGCCTTAATCTTGACGCCGTGCCCTATCTTGACGCCTTCATCGATGTAGACCGGCCCCTGAATCTCAACGTCTTC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 625880-627522 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUV01000001.1 Thermococcus sp. 9N3 NODE_1_length_1229293_cov_36.069676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 625880 30 100.0 36 .............................. TGAAGTAGTCATAAACGCTTGATATCTTGTCGAATA 625946 30 100.0 36 .............................. AGCTCTTGATGTATCGTGCCGTAATCGACTTTCTTT 626012 30 100.0 38 .............................. AAACCATATCCTGGTCCTCTCGCCGAAGTAGTTCACGT 626080 30 100.0 37 .............................. GAAGTGGCGAGCATGATGTTCGAGGCCGCGGTGGCGT 626147 30 100.0 38 .............................. CGTAAAGGTCCCTCGCAAGGCCCTCCTTCAGCCTGGCA 626215 30 100.0 36 .............................. CAGGAGAGGAGGTAGGGCGTCAAGGTCGAACTTCTC 626281 30 100.0 37 .............................. GAGGGACAAAATCGTAGAAATCTATCTCAAAGGTATG 626348 30 100.0 38 .............................. TCATCAACGCCCGAAGCCTCATCAATGATATAAAGTAA 626416 30 100.0 37 .............................. TAGGATTTTCCTTAACTGCCGTCCGGTTGGCGCGGTG 626483 30 100.0 35 .............................. GTTACTCTGTGAACCACGCTATATCGCCCTTATTG 626548 30 100.0 37 .............................. GAATCATGCCAAGGAAGCCCACAATAGCCCCAGTCAG 626615 30 100.0 36 .............................. CAGGAGAGGAGGTAGGGCGTCAAGGTCGAACTTCTC 626681 30 100.0 37 .............................. GAGGGACAAAATCGTAGAAATCTATCTCAAAGGTATG 626748 30 100.0 38 .............................. TCATCAACGCCCGAAGCCTCATCAATGATATAAAGTAA 626816 30 100.0 37 .............................. TAGGATTTTCCTTAACTGCCGTCCGGTTGGCGCGGTG 626883 30 100.0 35 .............................. GTTACTCTGTGAACCACGCTATATCGCCCTTATTG 626948 30 100.0 42 .............................. ATGTTGGCGAAATAGCGGAGGTCAAAAATGGGTTTGGAAAAG 627020 30 100.0 37 .............................. CTATGAGGGGGATATAAGCGAGCGTACCAGGCAGCGT 627087 30 96.7 38 .................G............ CAAGAATACGCTTTTCAGCCTCCAGAGAATCCTCATAG 627155 30 100.0 38 .............................. TGGCCATCATCGTTGACCAGGACGGGCAGGTTGTCGAG 627223 30 100.0 37 .............................. CTATGAGGGGGATATAAGCGAGCGTACCAGGCAGCGT 627290 30 96.7 38 .................G............ CAAGAATACGCTTTTCAGCCTCCAGAGAATCCTCATAG 627358 30 100.0 38 .............................. TGGCCATCATCGTTGACCAGGACGGGCAGGTTGTCGAG 627426 30 96.7 36 .................G............ AAGCCGGCTCAGGCGCGTGTTCCTGCTTACGCGGTT 627492 30 76.7 0 .............C.C.GA....CCA.... | A [627503] ========== ====== ====== ====== ============================== ========================================== ================== 25 30 98.7 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : CCGCTAAATATGCATGGTTTGATATAAAATCAGCCGGCACTTTTCTCAGGGGAGTATCACGGTGAGAAAGGGCCGAGACCAGAAGGGCCCCGGTAGAGAGGAAAATTCAAAACAAGCGGGCGGAAGAGGCGGTTGGAAATCGGATTTTACAAATCCTTAAATGCGACATAGTGTTCCAGATTCCAGGTGGAATGTTACGAAGTTTTTTCGAAGCGAACAGATTGGATACGAGCGGGGAGCTTTCCACTGGAACCCTGATGAGGTTCAATTATTCCGCCAGACAAAACCAAAACTGCCTCAAAACCAACATTAAAACGCTCTCGTGAGTCTAGAAATCCCACCGGTGCCCCGGGCCAGGCATGAGAACGATACCCAATCCCCGCGAGAGACAACGTGACGGTCAGCACGACCGACCCCGGGTAAACGCAGGTTTCCAGAAAGGCTTAAATATTCCGGTGTTCTCTTCTCTTCGTTGGGCGGAAGGACGAGTTTTGCGCCCT # Right flank : GTAGTCCCGCAGGAAAGAAGCGAAAGAGCTCAAACCTTAATCCTCTTCCAGACCGTTCCCTGCGGTGTGTCCTCCAGCTGGATTCCAAGCTTTCTCAGCTCGTCCCTGATTTTGTCAGCCAAATCGAACTTCCTCTCCTTCCTGAGTTGGGCGCGGACCTCAACGAGGAGCTTTATGAGTTCCTCCTCGTTTCCGGCCTTCTGCTCCTTGAAGTAGTCCTCAAACAGGCCGAAGACCTCGCCGACGTCCTTGAAGAACTCCCACGCCTTCCTGAGGATGCTCTCCTTCGGCTTTTCCACCTCGGTGAGGTATCTATTGATAGCGTTGCTGACCTCGAAGACCGCCTTCAAGGCCTCGGCCGTGTTGAAGTCGTCGTCCATGGCCTCGTAGAACTTCTTCCTGGCGTCCCTTATGGCTTCGTAGGCCCTGAACTCGGGCTCGTCCCAGCGGAAGGAAATCTCCGCCTTCTCCATTGCCACGCGGATGTTTTCGAGCGTGTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 893212-891773 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUV01000001.1 Thermococcus sp. 9N3 NODE_1_length_1229293_cov_36.069676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 893211 30 100.0 37 .............................. CTCTGAGCACGTAGCTTATTGATAAGGGCCTCCTCTG 893144 30 100.0 37 .............................. TCGACATCAGCGAGGACTTATTAGATGACATTCTCCT 893077 30 100.0 38 .............................. GCGGAATCAATGCATACAAGTCCTCAGCATAAGTTCCC 893009 30 100.0 36 .............................. TAAGGTTACAGAGGTCGCGGAAGCTGTAGATGTCCA 892943 30 100.0 36 .............................. TCAAAACGCCAAGCTCCCTGGCCACGACGACAGCGG 892877 30 100.0 37 .............................. AAGGATAACGCCCCCCTTTCCTCTCTTCTCCACCCAT 892810 30 100.0 39 .............................. GTGCCTTTCCGAGTATCCGAGCTCTGCCGCGAGAGCCTT 892741 30 100.0 36 .............................. TCAACGAGATTCGCGTCGTCAGCAATGGAAACGTCG 892675 30 100.0 37 .............................. GCTCAGGATTCTCTTTCAGCTCTTGGATAATCAGCTC 892608 30 100.0 37 .............................. AAGTTCATGATATGGGACGGGGATTATATTATAATAG 892541 30 100.0 38 .............................. ACGTGGAGGAGAATGAGGAGGGAAACCGGAGGCTCAGG 892473 30 100.0 37 .............................. TACGCCGGGCCTCCTCTACCACCGCCAGAATATCCCG 892406 30 100.0 37 .............................. TGGGATTCTCAGCCTCGATTTTGTCTAGAACCCTCAG 892339 30 100.0 37 .............................. ACGAGGGACCTTAAGCTGATGCGGGGACGGCTCAAGG 892272 30 100.0 36 .............................. GGGTCTTTGACGCCCTCTTTCAGATTATCCACGAGG 892206 30 100.0 37 .............................. GAGCTTTTGTTGTTCCTCTTTCTGCTCTGGGGTTAAG 892139 30 100.0 37 .............................. GCGCGGACGGGCTTAGCGGAACGTCGGCAGTTACGGA 892072 30 100.0 37 .............................. CTTAAAAGCATTCTCCCCCGGCTTTGGTCTCTCCGTG 892005 30 100.0 37 .............................. CGTCGTATTTTTCCGCTAAATGCTCCGCTCTCCGTGC 891938 30 100.0 38 .............................. ACCGTAGATGGTGGGGTTTAGGTTTAGAAACTACTTAA 891870 30 100.0 38 .............................. ATACATAATATTATGAGACTCGCGAGAACTGTCAGCAG 891802 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.8 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AAAGTTTTAGGTCGAGGAATTTTAACTTTTCCGATGCATCACGCTCAGAACGCTCTGATTTTGGATAGCGACCACCATAGCGGAGAAAGCGCAAAAACCTTCCCCAATATCACCAGGAAATCGATTTTTATGCGCTAAAAAACTGGAACATATTGTTATATTTTTGTTGCAATCCATTCCAAATTTCCTTCCAAATACTGAGATAAAGGTGTGCCTGGTCCAGATTCGCCCAATCACTGTTTAAATCTGACCGTTTTTCATAAAAGGAGATTTTATATCAGCTTCTAAGAAATCGCTGGCGCCAACCCCTCGGCATTTGACAGTACTTATTCCGGGATTGATACAAATCGGGTAAAAGACGGCATCGCCACCTTTGTAAGTGGGTTTATTCCCTCAACCACGACTAACAAGACCTTCGAAATTAGCACCAATCTCCGGAAAGGCTTAAATATCGAGAGGTCTTCTCTCTTTGTTGGGCGAAAGAATGAATTTCGCGCCCT # Right flank : GGACGAGCCCTTTGAGCTAAGTTCCAAAATTTAGGCAGAGAAAAAAGGGCAAAAAGCCCTCAGAGAAGCATCCTCGCGTCGACGGCAACGGCGCCGTCCTCGTAGGCGAAAATCGGGTTGATGTCGAGCTCCTTAATCTCGGGGAGCTCAAGGGCAAGCTCGCCGACCTTGACGATGATGTCAGCCAAAGCCTCGATGTCCACCGGCTTCTCACCGCGAGCTCCGGCGAGAATCGGGTAGGCCTTGATTTCCTTAATCATCTCAAGGGCTTCCTCCTTGGTAATCGGGGCGACGCGGAAGGAAACGTCCTTGAGAATCTCGACGAAGATTCCACCGAGACCGAACATGATGGCCGGACCGAACTGCGGATCGCGTATCATACCGACTATGACTTCCTTGCCGAGCGGGAGCATCCTGTAGATTATGACGCCCCAGAGGTCGGCGTCGGGCTTGTACTTCTTGGCGTTCTCCATGATGGTCCTGAAGGCTTCTCTTGCCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //