Array 1 40686-39860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000013.1 Fervidobacterium thailandense strain FC2004 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 40685 30 100.0 35 .............................. TCGGTAAAGGAGCTAAGCTTAGCCGAGGCTCAAAA 40620 30 100.0 36 .............................. ATCTCTGGATATGTCACCTCCTCCCAGCGAGGAGGC 40554 30 100.0 36 .............................. CTCTCAGATCAATCGCTTCGAAAGACATGGCCACAA 40488 30 96.7 35 ..........C................... CCGTAATACGATAGCAGTTTTGCTGGCATACTATC 40423 30 100.0 36 .............................. GCCTTCGATGTATCGGAACGCTGTACACATAAACTG 40357 30 100.0 36 .............................. CGGGACTACATGATTTCTGACAGTTGCTTAGTCTTT 40291 30 100.0 40 .............................. TTAAAATGTGAACGTCCGACCGTTCTTTTGCAAGCCGTAA 40221 30 100.0 36 .............................. GGTATCTTTCGTAGAAATCTATTCCGTCGTTTACGC 40155 30 100.0 37 .............................. CTGAGCGATGCGTATTATGAGATTGAGGTTGATTAAG 40088 30 100.0 36 .............................. GTCAACTCTTTTGTTTCTTCGTCGTATACAAACATC 40022 30 96.7 36 ..........C................... TACGTTGAGACTGTGAACTTATCGTCTTCAAGTTTG 39956 30 90.0 37 ...C..........C..............G GCTTCCATCGGGGTTCTATATATCACCTGAACACTTA 39889 30 83.3 0 .........A....A..A..C....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 97.4 36 GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Left flank : | # Right flank : TGCGGTTTGTAACGGAACTTTGCGAAGGTGCTGGAAGTTGTAGCGACTTTGTGAGGTGAAAAATGAAGAAACAAAAAAGGCCTCCGTTTTGGAGGCCTTTTTTATCTGGACTCAGCGAATAATTGAGATCTGGAATGTCTTATAAGGTTGAGTTTGCGCGCATGTGCATAGGATAATATGAAAATCTCTACTTTAATCAAAGCTAAGTACAGCGGTATAGATGTTTGGCGAATTTGGGACGTATTGGTAAATCGTCAATTTATCGTATTTCCCGAGAGCGAGTCCAAATGCAAAGGCAATGCTTACTGGAGAGCTGAGAAAAATATGAAATCTTTCAATGTATGAGTCTTTTCTAACTTCTTGGACTGCCTTGTAAATTTCGGCCACTTCCTTTGACCAGTCCCAAGTCTGTAGATTTCCCGCATTTTTGTGAGAGATTTCCAGAACAGAAGGGTTCAGACCAACGGTCTCCAGATACTTAAGAACACTCCCCTTTAATG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7639-7305 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000026.1 Fervidobacterium thailandense strain FC2004 contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 7638 29 100.0 46 ............................. CAGTAGTTTCGAATCTGCTTTGTACCGTCGGAAAACTGCAAGTCGG 7563 29 96.6 48 .A........................... ACTCGCTACCGTCGTCGTCAATGCCTGTTCCAACCGTTCCGTGTCGGA 7486 29 100.0 47 ............................. CAACCCTAGCTGGTGTCCTCTCACCGCTCTGGCGCCGGCCGGTCGGA 7410 29 96.6 48 ........T.................... CGTCGAAGTGTCCAAGCATGTAGTACAGTACTGCTATGAACTGTCGGA 7333 29 93.1 0 ........TT................... | ========== ====== ====== ====== ============================= ================================================ ================== 5 29 97.3 48 AGGGAACTGCTCTCTGAAAGAGATGGAAA # Left flank : AGATCGTGGTGGGCCCTAACCGTTACTGGTCGG # Right flank : CTGGTAACTTACCTACATGAAAGGTCTCAGCATAGTCAAACCGCCAAGAAGTGACTTCCCTCAGAAAGGATGAAAATTTGTTTCCAATCACCATCCGTACAAACCCAGAGGTTTCAGTCAAAAAGGTACTTCTCTTTGAGAGTGTGGTGTGCGGAGGAAAGTTTTTATTTGTCATGAGAAATCCTGGGACGAAATCTGTATTAACTTGGTGAGGCATTGGGAATTTGCAAAAGAACAAAAAAGCCACCACGGTGTGTGGTGGCTTCTTCTTATTTTTAGGGGGTGTGCGGGATGATTTGGATTTGGAGAATTTTTAAGGGAGTGTGGATAGGTTTTGAGGAGCTTTTAGGCGTGTTTTTATTTGCTCTGTTTGTGACAGGAATAGCAGCCTTGATTTCATTTTTGAAGGAACGGCGCAAGTAAGTAAGTTTTCGGGATGATCAGGTTCTTTTTACCTGTCCCAGTCCCATGGTCGTTTTGTAGCCAACTCCGCTGTAAAA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGGAACTGCTCTCTGAAAGAGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 614-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000025.1 Fervidobacterium thailandense strain FC2004 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 613 36 100.0 41 .................................... TAGCGTCGCCTGCTTCCGCAGGCAACGTATCCATGTGTGCT 536 36 100.0 43 .................................... AAAGTTATGTACCCCACTTACGACAGCTACAGAGAGGAGAGTT 457 36 100.0 40 .................................... ACGAATGTAACCGGTGACAGTAACAAGTTGATTCGTGAAT 381 36 100.0 42 .................................... CCGAAACCGGGGCAACAAACTGATTTTTCTTGACACAGATAC 303 36 100.0 42 .................................... ACCCAGACTCCAAATACCTCTCGAAATAAACTTCCCACGACG 225 36 100.0 40 .................................... GACAAAAAGCCCCGGCGGCGGGGCTGTCAAATGTAAGTGT 149 36 100.0 41 .................................... TTGAGATTCATGTTTTGGTCTTTGACAAGCTCCCTTAAGGC 72 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 99.7 41 GTCGGAAGGGAACTTCTCTCTGAAAGAGATGGAAAC # Left flank : AAGAATTTCCGCACTTTTGTGTGGAAAAATCAACAACTTTGTGGTATAATTCAAACAGCGCACACTCAACAACACATACCAAAACGCACGAAATCGTGTAAAGCACTTTTTCACAATCACTCGTAAAACATCCCCATCACACGATTTCTCGCAACTAATCCATAACATAAAATCGTGCTTAATCGTTGTATTTATGCTTCAACCGTCCAGATTCACAAAATCAAAATTCCAAAAAGCGCATCGATTCGTGATTTTCGATTTCGGACGATTTTTTCCGAACCTACTTTACGATAATGTTAAGATTGCTCCGAATGTTCAAAAGTTAAGGATTCAGGCTGTAGGATGAGTAACAAGGTTTTTACCCACCTAAACTCAGCGTCAATACGTGGTTTAGAGTGATAGTTAGCTAGGTGCAAACATATTTTTATATGGCTAACTTTGGGGGTTCGGAAAATCGCGTTCCAGATTGCAACTTTTTAAGCGGACTTTGGAAGGCAAGG # Right flank : ACCTGCCTCTCCTTTCAAGCACTAATTGAACGGCCTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGGGAACTTCTCTCTGAAAGAGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 15790-15294 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000025.1 Fervidobacterium thailandense strain FC2004 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 15789 36 100.0 41 .................................... ATGGATACATTGCCTGCGGAAGCAGGCGACGCTATAGACGT 15712 36 100.0 41 .................................... CAGAGGATACTTGCAGGTGACGCAACGGCACTGACACTTGA 15635 36 100.0 41 .................................... TTTAATAGAGCCAAGTCAAGGTTCTTAAATAAGAGTTGGTT 15558 36 100.0 41 .................................... TACGGTCTGTACTACCAGACAATCATACAACGTATGCTAGA 15481 36 100.0 41 .................................... TGTATGTACATGAGACAGACCTTAAAAGTTTTAGGCCGAGT 15404 36 100.0 39 .................................... TTCGATTTGGCGGCGGTGTTGAGAAGCTGGGGAGTTAAA 15329 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 100.0 41 GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Left flank : GAAGTTCCCTTCCGACTCCGGAACTGTTGCCCGGGTCGAAGCCCGGGCAACAGT # Right flank : CCTTGCCTTCCAAAGTCCGCTTAAAAAGTTGCAATCTGGAACGCGATTTTCCGAACCCCCAAAGTTAGCCATATAAAAATATGTTTGCACCTAGCTAACTATCACTCTAAACCACGTATTGACGCTGAGTTTAGGTGGGTAAAAACCTTGTTACTCATCCTACAGCCTGAATCCTTAACTTTTGAACATTCGGAGCAATCTTAACATTATCGTAAAGTAGGTTCGGAAAAAATCGTCCGAAATCGAAAATCACGAATCGATGCGCTTTTTGGAATTTTGATTTTGTGAATCTGGACGGTTGAAGCATAAATACAACGATTAAGCACGATTTTATGTTATGGATTAGTTGCGAGAAATCGTGTGATGGGGATGTTTTACGAGTGATTGTGAAAAAGTGCTTTACACGATTTCGTGCGTTTTGGTATGTGTTGTTGAGTGTGCGCTGTTTGAATTATACCACAAAGTTGTTGATTTTTCCACACAAAAGTGCGGAAATTCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 6669-7160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000027.1 Fervidobacterium thailandense strain FC2004 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6669 30 100.0 36 .............................. ACCCCGCGCCTACACCCTAACGATACACTATGACTA 6735 30 100.0 36 .............................. ATTGGATGATCAAGTTTAAAATAGACGTGGTAACCG 6801 30 100.0 36 .............................. GAAACCATCAAAAAGAATCCCTCCGCACAAGTATGC 6867 30 100.0 36 .............................. ACGCAACAAAATGAACCTTTCTACCACGCAAATGTT 6933 30 100.0 37 .............................. AACAATTCGTTGGAATCAATTCCCTCACGTCTCTCGA 7000 30 100.0 35 .............................. GGAAGTACTCTCGGAGAAATTACGTTCGCAATAAG 7065 30 100.0 36 .............................. TTAGCCTAACTCTCGCAAAGTTGGAGTTTGGAATAT 7131 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Left flank : ATGATGTTAACGAAAAAAGAGTCGCGAAAGTTCTAAAGATCGCAAGAAAATATTTAACTTGGATCCAAAACTCGCTGCTTGAAGGAGAAATCACCGAAAGCAAGTTCGAAAGACTAAAGGCAGAACTCTCAAAGATTATAGACGAATCGGAAGATTCTGTAGTTTTCTATAAGTTTGGAAGTGAAAAATTATTTCAGAAAGAATTCATGGGAGAAAAGCTTGGACCGAAGTTATTCATGTAACAGAATTGTACTATTAACTTTTTTGCAAATTTTTCCCGGACCTCCGATAGTGCAAAAACCCCGGGGGGTCTGGGAATTTGTGAAAAGTTTGCGTTCAATGTTATGTACGCTACGTTTTTGAAGGAATTTGATGTTTTTCTTGACATATTTTTCGAGTTTTTGGTATAATTATTTTGAAAGCTCCTGTCAGATCACGCCATATTCCAAAGTCTTTTTATAATGGAAAATATGAAATTGTTAATTATCTTGTAATGACCA # Right flank : GTATTTCGGTCGCGATACTGCAAATCAATCTCGGCCGAGTTTGTAGCGTCCCCTATGAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 177542-178170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000004.1 Fervidobacterium thailandense strain FC2004 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 177542 28 75.0 107 ......T..GA.....C...A...C..A TTCCAGAACATGTCTATAAAACCTCAACTTCTGTAGAGCCAAAACAAGTTTCCAATTCTCTCAAAGATCTCTCCTAACCTTCCTGGAACGGCCTACAGAATCCAGTA C,A [177549,177557] 177679 28 92.9 48 ..C...T..................... TTTCTGACTTGGCCACCAGAGCACAGCTCAGTTGCTCAGTGACTTATT 177755 28 96.4 51 .........................C.. CTTCCGACGGGGATGATGTTTGTAAATTTAACAAAACATGACGTAGTAGTT 177834 28 96.4 50 ...............G............ CTTCCGACAGTTTGATTCCGGTTTCCAAGATCACGGCTGACGACGTACTG 177912 28 100.0 49 ............................ CTTCCGACCAAGCACCGTACCTACGAAATAGTAGGTACGGTGCCGTATC 177989 28 100.0 47 ............................ CTTCCGACAGATATTCGGCAAGAAATCTTGCTTGGACTGTTAGAAAA 178064 28 100.0 51 ............................ ATTCCGACGAGATAGCGAGAGGTGTTTGGAGTCTTGGAGATTTTCAGGGGC 178143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 8 28 95.1 58 GTTTCCATCTCTTTCAGAGAGAAGTTCC # Left flank : AGTATTTCTCGATTTCCTTTCCTAATCTTTAAAATGTTCTCCCCTATCTTCTGAATCTCTTGATCAGCCTTCTTCACACCTGACATAACCTTTCCCTCCTTCGACTCAGAAATTATCGATTCCAAATTATCAATGACAATTATCATCATCATTGGTATCCGAAAGCATGAAAAAAGCGGTAGGGCTTATCCTACCGCTTCCCGAAACACCGAATTTCAAGGCGACTTGAAAATCTCAACGATCAATACTAAATATTCCTCAAAACAGTGCACCTGTTATTAACCTCATTATACATATGTATACCTACAATCCCAAACCAATTAGAACTTATGCTTGTCAAACAGGACTTATAACTCCTATGCGTCAAAACACTAACCGAACAGAGTTCAAAACCGGCCATTTATTAGTAAAAGGTGAGTAAGAGGCGGGAGGCCTTTCAACAGGAAGCCCGTTCATAATGTGGGAAACTTTTCAGACCTGGCAAACTATGCTGGGGTAGA # Right flank : CTCCGAC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1459-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000035.1 Fervidobacterium thailandense strain FC2004 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1458 29 96.7 36 .............-................ CCGTACATGTCAGGGATGTCAGTTGACGCATATTTT 1393 30 100.0 38 .............................. ATTCTTTCTACCGCATCGACATCCTTCCCGAACAACAC 1325 30 100.0 37 .............................. CGCTGTGCGGGATATATTCCGTTTCGCGCACATATCT 1258 30 100.0 36 .............................. TGATGTCACCATGCTCCAGCTTTGTTTCGCCTCTGT 1192 30 100.0 36 .............................. CCTTGCCGAACGCCTTGTACCATTCAACGATTTTCC 1126 30 100.0 36 .............................. CACCATACTCCTTCGCAACATACTTGCTTGGCTCTT 1060 30 100.0 36 .............................. CCCCCAAAATTGTATTCTTCATCAAGCGCAAGCAAC 994 30 100.0 38 .............................. AAAGCCCTTGTTCCATTGTTACCTGAGCACATCCGTCT 926 30 90.0 0 .............TC....A.......... | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 37 GTTTGTAGCGACCCTATGAGGGATTGAAAC # Left flank : | # Right flank : TATTTAGAATCTCCTTTGCCAACAATAGGAATTGGTGCGAAAACCTCATTGGGTTACGGTATTTTTACTAAGTGCGACGCACAGTAGTGATGCGATTATCATGAGTTCTTCTATCGAAAAAACAAAAAGGTAGGTCTCAAGACCTACCTTAATTTTGTGATATCTTTTTAGATAAGAGTTCTCAGCTAACTGTCCTTTTACATCGCTCGAACTTACAAAGATAGTAATTTTTTCTACAAGTTCCACAAACAAGAATACTAATAGGAGGATGTTAAGAAACTTTGAGAAGTGAAAGCATCAAATCCAAACTGCACCTTAGATGTATAACTAGATGCACAAATAGTTCGCCAAAGACAAGTTATCAAGGAATAGAGATAATAGAAATGCTATTTCAAGCAATGCTTATGGGAACGGTGATAATTTTATTGTGAGCGATCGCAAGGAGCTTTTCGCATTCAGGTGTCAAAGTGACTGCAAAACAAGAGGACCGTCATGATCGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGACCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 395-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000041.1 Fervidobacterium thailandense strain FC2004 contig00041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================= ================== 395 32 100.0 44 ................................ TGACATTGGAAGAAGCAAAGGTTCTTGTTTCTAAAGCAGCTAAG 471 32 100.0 45 ................................ TGACAAACAGGCTACTACCTTAGTGCTATTCGTAGGGATGGAAGA 548 32 100.0 44 ................................ TGACATGAAATCACCAAGGAATTGACTGATAGGGAAGTCATTAA 624 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================= ================== 4 32 100.0 45 GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCC # Left flank : GAACGTGATTGAGTACATCAAAGCGTTCGTTGTGCTCCACAACATCAAGCGGAAGTTGAGAATGCAAGAGCCAGGAGACTGGGTGAAGATACAAAGACCACTGGTGGAGTACCTGGTGAATCATTTTGAAGAGCTATTTGCGTTTGGCTGAGTTGTGGAGCGTGTTGAGTAAATGAAAGTGGAATACTGAAGAAGTCAAGCTGCGAGAGCAGCGGGGATGATGTTTTGGCAAAGCTGAGAAAAACAGCGTTTTTGCGAGCCGAAGGATGATTTCAAAGACCGAGATTTTTGTTTAAGGACGAGGGGTATACCCTCTATCAGCAAACTCTAATCATATCGTCGAACAGACTCCAAAAAAGAGTTGGTAGAGGGGGATAGGGTGATGGTTTTTAAGG # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 42-454 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000043.1 Fervidobacterium thailandense strain FC2004 contig00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 42 36 100.0 40 .................................... ACAAATGTACGATCTAGTACACTTGGCAGTTTACGATGGT 118 35 97.2 39 ...........-........................ ATTATAAGCGGTAGTTTCAAAGGAAGGATTTACCAGGTT 192 36 100.0 41 .................................... TACATGTTCAGTTGATTTGACTTGAACTTCAATCTCCGCGG 269 36 100.0 39 .................................... GAAACACAGGAACTACTTTGTACTCGTACACGGTGACTT 344 36 100.0 40 .................................... ATTGGTTGCTAAGGATGCACTTATACGTGGTACATTCAAA 420 34 94.4 0 ..................................-- | C [446] ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 40 GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Left flank : CGTCCTCCGGAAGGGTGGTTTGACACAGTTTTAATTAGCAAG # Right flank : | # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 464-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000033.1 Fervidobacterium thailandense strain FC2004 contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 463 36 100.0 41 .................................... CAGCAGATCGACTATGTCTACTGCAGGGTTTCCGCGGCCGG 386 36 100.0 40 .................................... TTAAGAACCTTGACTTGGCTCTATTAAACAATTCCTTCAA 310 36 100.0 43 .................................... TGTCGCTAGGGTTGTGTGTATACATCCCTCTGTTGTACTGCAG 231 36 100.0 42 .................................... TTTCATCTAACTCCTTTATAACCATGAAGTTACGTCCCTTAA 153 36 100.0 42 .................................... CATCAATAAATGACTTTTGGTTAACAATCAACAACTTCTTGT 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 100.0 42 GTCGGAAGGGAACTGCTCTCTGAAAGAGATGGAAAC # Left flank : GGAATTTCCGCACTTTTGTGTGGAAAAATCAACAACTTTGTGGTATAATTCAAACAGCGCACACTCAACAACACATACCAAAACGCACGAAATCGTGTAAAGCACTTTTTCACAATCACTCGTAAAACATCCCCATCACACGATTTCTCGCAACTAATCCATAACATAAAATCGTGCTTAATCGTTGTATTTATGCTTCAACCGTCCAGATTCACAAACGCAAAATTCCAAAAAGCGCATCGATTCGTGATTTTCGATTTCGGACGATTTTTTCCGAACCTACTTTACGATAATGTTAAGATTGCTCCGAATGTTCAAAAGTTAAGGATTCAGGCTGTAGGATGAGTAACAAGGCTTTTACCCACCTAAACTCAGCGTCAATACGTGATTTAGAGTGATAGTTAGCTAGGTGCAAACATATTTTTATATGGCTAACTTTGGGGGTTCGGAAAATCGCGTTCCAGATTGCAACTTTTTAAGCGGACTTTGGAAGGCAAGGG # Right flank : CCCCTTCATTCAGAGATCCTAGGCTCCAGATCCCATTGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGGGAACTGCTCTCTGAAAGAGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1767-2336 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000033.1 Fervidobacterium thailandense strain FC2004 contig00033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1767 36 72.2 37 .C....G.......A.A...A..A.G....T.A..T AAACATCTAACACAAAACCATCATTTTAGGAGAGTTT C [1775] 1841 36 100.0 42 .................................... TCAGCGACCTTCTTGGAGTATATGTTCCATACAATCGCGCAG 1919 36 100.0 39 .................................... GACTCAGCAAACGATTTGCTGAAATACGGTCTTCGCATA 1994 36 97.2 40 ...........C........................ AGGTTGATTGTCTCGGAGCGTGCGGTGCTCGACGGAACGT 2070 36 100.0 42 .................................... GGGATATGGAGTCTCGGTGTTAGTGAAGGAAAGGAAGGGGCG 2148 36 100.0 40 .................................... GGTCACTTGGAGCATCACTTGGAAAGGAAGGGGCGTAATG 2224 36 100.0 41 .................................... CGGATATCGCAGACCTGCTGGGTGTCCACCTATACCAGACA 2301 36 97.2 0 ...................G................ | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 95.8 40 GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCCTGAC # Left flank : GAGTGTGTGGAGAGAGTGAAAAGAAGTTGAACGAGTGGAACGAAACATTTGAGAAGTTAGATTTACACTTAAGTCCAATACCGCCGAGGACAAAACACATGATGCGAGTAACAGAAAACACGCATAGAGCGGATGATGAATACTTTTAATGATCCATATGGAAAGATGTGAGAAGAGGGAGGAATTTTTAGATAGAGCGCAAAAAGGTAGGGAACTTGTATTCTCTTTTCAATAACTAGTAAATATGTCTTCACTGACTGTCATTCTTGCTACGAATTCCAAACAACTTTACTTCCAAAAAAACGACCACAAGTTGCCTAACTCATCCTCTATTCTGAATAACTTAGTCCTTTGGGCGTTGTTTGGAAGCTCTGTGCATTTTCCGCATAACCCTTTCACTTCCTTACTGTATCTGCCGGTCAAGCTCTTGATTCTTTCGGATAGAGGTACCTTTCAAACTCGAGGTGCTTCCGCGTTTAATGTCTCGCTCCCCACCAAAA # Right flank : AAAAAAG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 258-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000051.1 Fervidobacterium thailandense strain FC2004 contig00051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 257 28 100.0 48 ............................ TTCCTGACATTGGAAGAAGCAAAGGTTCTTGTTTCTAAAGCAGCTAAG 181 28 100.0 49 ............................ TTCCTGACAAACAGGCTACTACCTTAGTGCTATTCGTAGGGATGGAAGA 104 28 100.0 48 ............................ TTCCTGACATGAAATCACCAAGGAATTGACTGATAGGGAAGTCATTAA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================= ================== 4 28 100.0 49 GTTTCCATCTCTTTCAGAGAGAAGTTCC # Left flank : CCAAAAAAGAGTTGGTAGAGGGGGATAGGGTGATGGTTTTTAA # Right flank : C # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 353-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000047.1 Fervidobacterium thailandense strain FC2004 contig00047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 352 30 100.0 36 .............................. ATTTCCCGATATGTCCATCGCTCACCGCTGATGTAA 286 28 93.3 36 ............--................ ATAATTCCCACGGTTTGATGAATGTTTCCTCAGAGT 222 30 96.7 38 ..........C................... CACTTTGGATATTGCCGTTTTCCCTGTTGAGCTTCGGG 154 30 100.0 36 .............................. TTATACAAGATGTTGTCGATTGAGCGGACATAATAC 88 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTTTGTAGCGACCCTATGAGGGATTGAAAC # Left flank : CAATGTT # Right flank : CGAAAGATTGGAACGGAACTTCATAAGCTTGTTTCGAGCGTTTGTAGCGACCCTATGAG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGACCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 49-200 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000055.1 Fervidobacterium thailandense strain FC2004 contig00055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49 30 100.0 36 .............................. GAACACCCGAATGGTCAACAAACGTATACTTCGGTG 115 29 96.7 38 .....................-........ AAATTTGCAAGAGAGCCATACCTTGCAATATAATTAGC 182 19 63.3 0 ...................----------- | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 86.7 38 GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Left flank : GGATTGAAACCAGAGTAAAATAGGATCGGACTCCGATGAGGAGTCAAAG # Right flank : | # Questionable array : NO Score: 8.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.34, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGTCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46-691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000009.1 Fervidobacterium thailandense strain FC2004 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 46 36 100.0 40 .................................... TGTTTACGTCGACGACGTACTGTCCGTGTTACGAAGACTT 122 36 100.0 40 .................................... GTGTACAAAATTCAGTTTATCGGTAGTCAGAAAAACGAAA 198 36 100.0 39 .................................... AGTGACGTTCGTTGGGCAGGGCTGGAACTTCCGCCCAGG 273 36 100.0 40 .................................... ACGGAAAGAAGAGTGTTTGAGAAAAAGTTCAACATTACGT 349 36 100.0 40 .................................... TCATGGTTATAAAGGAGTTAGATGAAAGGGAGGCATTGAA 425 36 100.0 40 .................................... TCATGGTTATAAAGGAGTTAGATGAAAGGGAGGCATTGAA 501 36 100.0 42 .................................... TGCTCTTTGACTGGCCCGGTCAAAGAGCTAGGCAGGGAGGGT 579 36 100.0 41 .................................... GATATTACCGTCTACGACGACAACGGAAACATCATTCTACA 656 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 100.0 40 GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCCTGAC # Left flank : TGACCCAGAAGTTGATTTTGGTATCAGAGGATGCCATAGTGAAAGG # Right flank : CCCTTACCTTCCAAAGTTCCCTTAAATAGACCTTTTTTGGAATGCGATTTTCCGAACCTCCTGATTTAGTTGCGTAAAACTATATTTTGACATAGCTAACTCTTACTCTAAGTCAAGTAACAGTGCTTAGTTTAGGTGGGTGATTTCCTTGTTATTAGTTTCCGCGGCTTGAATTCTCAGTTTCGGAACGCTTGGAACTATCTTAACATTGTCGTAAAGTAGGTTCGGAAAATACCCTCCGAAATCAAAAACCATTTATTCATGCAATTTCTTGAATTTATGCTTTGTGAATTACACGAGTTGAAGCATTGTTTCTGCTAGGTCGGATGTTAAAGTCGAGGTGCAAAGTGCTGTTAACGGCTTTATTCATCAGCTTTATGACACGCTTGTGAAAAATTCTCTTACACGATCTCGGGAATTTTTAAATTTGCTTTTCACTATTTATTGTAGCGTCAAATTGCGAAACTGTCAAGTGTTAGAAACACACAGTTTACCTATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCTTCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 495-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000007.1 Fervidobacterium thailandense strain FC2004 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 494 36 97.2 40 A................................... AAGTTGGTATTGTTAAATTCGGCTATTATGACTAAGGACG 418 36 100.0 40 .................................... AAGTTGGTATTGTTAAATTCGGCTATTATGACTAAGGACG 342 36 100.0 40 .................................... ATACGACCACTGGTGTGACGACGACTGTCACTAGTTACGC 266 36 100.0 41 .................................... TTGTCACGTGTGTTTTCAAGGGAAGAAAGTACGAGATTTTG 189 36 100.0 39 .................................... CTAAGACAACCTGGTAAACTGGAACGACCAAAACTATAC 114 36 100.0 40 .................................... AGGAAGAACTAGCCGAACTATTACAGATACCGGTGGAACA 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.6 40 GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Left flank : GTTACGAAGTGAAACACAAGCGTTCCCAACCCGGCTGTGAACAGAGCTACTAACGGATCAAGACCAGTCAGAAGGGGAACAAGCACCGTTGCGCCGAACATCGCCACAAAATGCTGGAGGGAGAGGATAAACCGCTTTGAGAAGGGGAGACTCTCGGTGGAAACAGCGGGAGAATCCGGGGAATAAGTTAAAACATCGAGCTTTTCCATGCTTTTTCCTCCTTTCTCGCCTCACTGGGCGAAATTAAAGGATTGCACACCTAAATCTTACCAGAGAACTCCTGAAAAGTCAAGCAAGTTCTTTAAATCAGACAGAAAAACGAGTACCTTTCCACAACTCGAATAGAAAACACTTTGGATAGATGCCAGCTCTCTATACTGAGAAAATCCCGTCCTGGCATCCAGCCCTTTCCTCTATGTTCTCACCATCGAAAAGACATCTTCCTGAACACCTTTCTGAACTCCTAAGCTCAACGTTGTCAAAAAATCTCATATTGTGGA # Right flank : CAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAAGTTCCCTTCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 93188-93550 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWAF01000007.1 Fervidobacterium thailandense strain FC2004 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 93188 30 100.0 36 .............................. CCTCAAGTTTGCTACTACCTCTATATCCACACGAAA 93254 30 100.0 36 .............................. AATGTGACAGCTCGAAAATCTTCGTTTTCGACAAAT 93320 30 100.0 36 .............................. AATGTGACAGCTCGAAAATCTTCGTTTTCGGCAAAT 93386 30 100.0 39 .............................. CTTGGTAGTTGTTCCAGGGTACAGTAGCATATGTACCTA 93455 30 100.0 36 .............................. CAAGCATACTCACCCCTCCACTTCTGGAAATTTTTC 93521 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 37 GTTTGTAGCGACCCTATGAGGGATTGAAAC # Left flank : GGTAGAGTTCCTGCGGTCAAAAGAAATAGAAAACAGTGGGTATGACAGACTACCGGAAGAATGCCAAAACAGCATAAATGCTCTCATTTCCCTACTCTAAACCTACAAAGAATTTCTGTTACATTAGTTAACTATTTGTTCACCCATTATACACTTAATACTCTTTCCACATTTCGAACTTCATTTGCAACAATCTGTAAAATACAAGAACATAAATTCAAACCTCCATTTCTTAACATTTCCATAATCTTTTATCAATCCCTTCTAAATAATTTCCCAGACCTCCGATAGCACAAAAACCCCCGGGGGTCTGGGAACTTGTGAAAAAGTTGTGCAAAACGTTATCCTTACAGCTTTTTTAAAGGAACTTGATATTTTTCTTGACTCGTTTTTCCACATTTTGGTATAATTATTTTTGGAAAGTTCTGTCAGACTACGTAATATTCTAAAGTCTTTTTATAATGGAAAAAGTCGAACAGTTAATTATTTTGTAATGACCA # Right flank : CCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCGACCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //